DR405720

Overview
NameDR405720
Unique NameDR405720
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405720 vs. ExPASy Swiss-Prot
Match: IDI2_HUMAN (Isopentenyl-diphosphate Delta-isomerase 2 OS=Homo sapiens GN=IDI2 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.086e-27
Identity = 57/103 (55.34%), Postives = 75/103 (72.82%), Query Frame = 3
Query:  243 TDAGMDAVQRRLM--FEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALG 545
            +D  +D V RR +   E+  I+VDEND+V+G + K NCHL E IE   LLHRAFSV LFN+K  +L+QQRS TKVTFP  +T++C SHPLY  +EL E++A+G
Sbjct:    2 SDINLDWVDRRQLQRLEEMLIVVDENDKVIGADTKRNCHLNENIEK-GLLHRAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIG 103          

HSP 2 Score: 33.113 bits (74), Expect = 2.086e-27
Identity = 18/46 (39.13%), Postives = 26/46 (56.52%), Query Frame = 1
Query:  523 LLRRTLLGVRNAAQRKLXXELGICAEDVPVDEFTPLGRILYKAPSD 660
            L  +  +GVR AAQR+L  ELGI  E +  ++   +    +KA SD
Sbjct:   96 LEEKDAIGVRRAAQRRLQAELGIPGEQISPEDIVFMTIYHHKAKSD 141          
BLAST of DR405720 vs. ExPASy Swiss-Prot
Match: IDI1_BOVIN (Isopentenyl-diphosphate Delta-isomerase 1 OS=Bos taurus GN=IDI1 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 7.177e-26
Identity = 75/159 (47.17%), Postives = 91/159 (57.23%), Query Frame = 3
Query:  228 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGGEECCTKKAFXXAGHLC*RC--AXXXXXXXXXXXXQGPF*WQSGGEHELDYLL 698
            M + +TD  +D  Q +LM E  CILVDENDR +G E K NCHL E IE   LLHRAFSVFLFN++ +LLLQQRS  K+TFP  +TNTCCSHPL   SEL E +A+G      ++     G                     Q    W   GEHE+DY+L
Sbjct:    1 MPEVSTD-DLDERQVQLMAE-MCILVDENDRRIGAETKKNCHLNENIER-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPSELEENDAIGVRRAAQRRLKAELGIPMEEVPPEEINYLTRIHYKAQSDSIW---GEHEIDYIL 153          
BLAST of DR405720 vs. ExPASy Swiss-Prot
Match: IDI1_MOUSE (Isopentenyl-diphosphate Delta-isomerase 1 OS=Mus musculus GN=Idi1 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.146e-23
Identity = 56/105 (53.33%), Postives = 73/105 (69.52%), Query Frame = 3
Query:  255 MDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGGEECCTKK 569
            +D  Q +L+ E  CIL+DEND  +G + K NCHL E I+   LLHRAFSVFLFN++ +LLLQQRS  K+TFP  +TN+CCSHPL    EL E NA+G +    ++
Sbjct:    9 LDEKQVQLLAE-MCILIDENDNKIGADTKKNCHLNENIDK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNSCCSHPLSNPGELEENNAIGVKRAAKRR 111          
BLAST of DR405720 vs. ExPASy Swiss-Prot
Match: IDI1_MESAU (Isopentenyl-diphosphate Delta-isomerase 1 OS=Mesocricetus auratus GN=IDI1 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.354e-23
Identity = 55/105 (52.38%), Postives = 73/105 (69.52%), Query Frame = 3
Query:  255 MDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGGEECCTKK 569
            +D  Q +L+ E  CIL+DEND  +G + K NCHL E I+   LLHRAFSVFLFN++ +LLLQQRS  K+TFP  +TN+CCSHPL    EL E +A+G +    ++
Sbjct:    9 LDEQQVQLLAE-MCILIDENDNKIGADTKKNCHLNENIDK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNSCCSHPLSNPGELEENDAIGVKRAAQRR 111          
BLAST of DR405720 vs. ExPASy Swiss-Prot
Match: IDI1_RAT (Isopentenyl-diphosphate Delta-isomerase 1 OS=Rattus norvegicus GN=Idi1 PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.686e-23
Identity = 54/107 (50.47%), Postives = 74/107 (69.16%), Query Frame = 3
Query:  249 AGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGGEECCTKK 569
            + +D  Q +L+ E  CIL+DEND  +G + K NCHL E I+   L+HRAFSVFLFN++ +LLLQQRS  K+TFP  +TN+CCSHPL    EL E +A+G +    ++
Sbjct:    7 SNLDEKQVQLLAE-MCILIDENDNKIGADTKKNCHLNENIDK-GLIHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNSCCSHPLNNPGELEENDAMGVKRAAQRR 111          
BLAST of DR405720 vs. ExPASy Swiss-Prot
Match: IDI1_YEAST (Isopentenyl-diphosphate Delta-isomerase OS=Saccharomyces cerevisiae GN=IDI1 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.829e-21
Identity = 54/95 (56.84%), Postives = 67/95 (70.53%), Query Frame = 3
Query:  240 TTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESEL 524
            T  +G D  Q +LM E+ CI++D +D  +G   K  CHLME IE   LLHRAFSVF+FN + ELLLQQR+  K+TFP +WTNTCCSHPL  + EL
Sbjct:   57 TCFSGHDEEQIKLMNEN-CIVLDWDDNAIGAGTKKVCHLMENIEK-GLLHRAFSVFIFNEQGELLLQQRATEKITFPDLWTNTCCSHPLCIDDEL 149          
BLAST of DR405720 vs. ExPASy Swiss-Prot
Match: IDI1_SCHPO (Isopentenyl-diphosphate Delta-isomerase OS=Schizosaccharomyces pombe GN=idi1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.951e-21
Identity = 63/150 (42.00%), Postives = 80/150 (53.33%), Query Frame = 3
Query:  258 DAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESE---LIEENALGGEECCTKKAFXXAGHLC*RCAXXXXXXXXXXXXQGPF*WQSGGEHELDYLL 698
            D  Q RLM E+ CI+VDEND  + +  K  CHLME I    LLHRAFS+F+F+ +  LLLQQR+  K+TFP +WTNTCCSHPL    E    + E   G +    +K F   G                     P    + GEHE+DY+L
Sbjct:   11 DEEQLRLM-EEVCIVVDENDVPLRYGTKKECHLMENINK-GLLHRAFSMFIFDEQNRLLLQQRAEEKITFPSLWTNTCCSHPLDVAGERGNTLPEAVEGVKNAAQRKLFHELGIQAKYIPKDKFQFLTRIHYLAPS-TGAWGEHEIDYIL 157          
BLAST of DR405720 vs. ExPASy Swiss-Prot
Match: IDI1_PHARH (Isopentenyl-diphosphate Delta-isomerase OS=Phaffia rhodozyma GN=IDI PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.078e-21
Identity = 65/151 (43.05%), Postives = 82/151 (54.30%), Query Frame = 3
Query:  258 DAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIES-LNLLHRAFSVFLFN-SKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGGEECCTKKAFXXAGHLC*RCAXXXXXXXXXXXXQGPF*WQSG--GEHELDYLL 698
            D  Q RLM E+ CILV+ +D   G  +K  CHLM  I +  +LLHRAFSVFLF  S   LLLQ+R+  K+TFP +WTNTCCSHPL  + E+ EEN +G     ++K     G                     P     G  GEHE+DY+L
Sbjct:   23 DEEQVRLM-EERCILVNPDDVAYGEASKKTCHLMSNINAPKDLLHRAFSVFLFRPSDGALLLQRRADEKITFPGMWTNTCCSHPLSIKGEVKEENQIGVRRAASRKLEHELGVPTSSTPPDSFTYLTRIHYLAP---SDGLWGEHEIDYIL 169          
BLAST of DR405720 vs. ExPASy Swiss-Prot
Match: IDI_DICDI (Isopentenyl-diphosphate Delta-isomerase OS=Dictyostelium discoideum GN=ipi PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.004e-19
Identity = 54/107 (50.47%), Postives = 73/107 (68.22%), Query Frame = 3
Query:  252 GMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLY-RESELIEENALGGEECCTKK 569
            G + +Q  LM ++ECI+VD +D+ +   +K   HLM  I +  LLHRAFS+FLFN + +LLLQQR+  K+TFP  WTNT CSHPL+   SEL+EENA G +    +K
Sbjct:   15 GHNEIQIELM-KEECIVVDNDDKPIRPGSKKETHLMVNINN-GLLHRAFSIFLFNGEGKLLLQQRALEKITFPGYWTNTVCSHPLWIVGSELVEENAQGVKIAAKRK 119          
BLAST of DR405720 vs. ExPASy Swiss-Prot
Match: IDI_SERP5 (Isopentenyl-diphosphate Delta-isomerase OS=Serratia proteamaculans (strain 568) GN=idi PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.605e-13
Identity = 35/80 (43.75%), Postives = 50/80 (62.50%), Query Frame = 3
Query:  285 EDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESEL 524
            ++  ILVD +D  +G ++K   H         LLHRAFS+F+F+S+  LLLQQR+ +K     +WTN+CC HP + ES L
Sbjct:    2 DEMLILVDADDNAIGSQSKTRVHQQ------GLLHRAFSIFIFDSQGRLLLQQRAFSKYHSAGLWTNSCCGHPRWGESTL 75          

HSP 2 Score: 24.2534 bits (51), Expect = 8.605e-13
Identity = 12/23 (52.17%), Postives = 14/23 (60.87%), Query Frame = 1
Query:  556 AAQRKLXXELGICAEDVPVDEFT 624
            AAQR+L  E+G  AE   V  FT
Sbjct:   77 AAQRRLQEEMGFSAELQQVSSFT 99          
The following BLAST results are available for this feature:
BLAST of DR405720 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
IDI2_HUMAN2.086e-2755.34Isopentenyl-diphosphate Delta-isomerase 2 OS=Homo ... [more]
IDI1_BOVIN7.177e-2647.17Isopentenyl-diphosphate Delta-isomerase 1 OS=Bos t... [more]
IDI1_MOUSE1.146e-2353.33Isopentenyl-diphosphate Delta-isomerase 1 OS=Mus m... [more]
IDI1_MESAU4.354e-2352.38Isopentenyl-diphosphate Delta-isomerase 1 OS=Mesoc... [more]
IDI1_RAT5.686e-2350.47Isopentenyl-diphosphate Delta-isomerase 1 OS=Rattu... [more]
IDI1_YEAST1.829e-2156.84Isopentenyl-diphosphate Delta-isomerase OS=Sacchar... [more]
IDI1_SCHPO6.951e-2142.00Isopentenyl-diphosphate Delta-isomerase OS=Schizos... [more]
IDI1_PHARH9.078e-2143.05Isopentenyl-diphosphate Delta-isomerase OS=Phaffia... [more]
IDI_DICDI1.004e-1950.47Isopentenyl-diphosphate Delta-isomerase OS=Dictyos... [more]
IDI_SERP58.605e-1343.75Isopentenyl-diphosphate Delta-isomerase OS=Serrati... [more]

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Properties
Property NameValue
Genbank descriptionCSAI-PNP1247G11 Developing fruit 24 DAFB Citrus sinensis cDNA clone CSAI-PNP1247G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405720 ID=DR405720; Name=DR405720; organism=Citrus sinensis; type=EST; length=706bp
GGGGTTGCCATATTGAGGTCCCAATGTCTACTACTACGCTTTATAACTGC
GCCACAACCAAACTCTGCTCCTCACTAATCAACAACTCTTCTTCTTTCTC
GAAGTCCCGTCTATTTTTCTCCTCTTCCCATTTCGCCCCTAGGGTTTCTT
CGATTCGCAGGCCTCTGTCCTTGGGAGGTGCCTCTCGTTCTAGCTCTTCT
TCTTCTTCCGCTCGCGCAATCAGCACTATGGGTGACGCTACTACTGATGC
CGGCATGGACGCTGTCCAGCGCCGCCTCATGTTTGAAGACGAATGCATTT
TGGTGGATGAGAATGATCGCGTTGTTGGTCATGAAAACAAATACAACTGT
CACTTGATGGAAAAGATTGAGTCTTTGAATTTGCTACACAGAGCCTTCAG
CGTATTTTTGTTTAACTCAAAATATGAGCTACTCCTTCAGCAACGCTCTG
GAACCAAAGTTACCTTCCCTCTTGTGTGGACTAACACCTGCTGCAGCCAT
CCTCTGTACCGTGAATCTGAGCTTATTGAGGAGAACGCTCTTGGGGGTGA
GGAATGCTGCACAAAGAAAGCTTTTNNNNGAGCTGGGCATTTGTGCTGAA
GATGTGCCAGTTGATGAGTTCACTCCACTGGGTCGCATTCTGTACAAGGC
CCCTTCTGATGGCAAAGTGGGGGGGAGCATGAACTTGACTACTTACTNNN
NNNTGT
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