DR405720

Overview
NameDR405720
Unique NameDR405720
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405720 vs. ExPASy Swiss-Prot
Match: IDI1_AZOSE (Isopentenyl-diphosphate Delta-isomerase 1 OS=Azoarcus sp. (strain EbN1) GN=idi1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 37/77 (48.05%), Postives = 47/77 (61.04%), Query Frame = 3
Query:  285 EDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRE 515
            ED+ ILVDEND  +G E K   H          LHRA S+F+F+S   LLLQ+R+ +K     +W+NTCCSHP  RE
Sbjct:    2 EDQVILVDENDTEIGVEGKMIAHRSGS------LHRAISIFIFDSADRLLLQKRAASKYHSAGLWSNTCCSHPRPRE 72          
BLAST of DR405720 vs. ExPASy Swiss-Prot
Match: IDI_ERWCT (Isopentenyl-diphosphate Delta-isomerase OS=Erwinia carotovora subsp. atroseptica GN=idi PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.993e-11
Identity = 35/78 (44.87%), Postives = 47/78 (60.26%), Query Frame = 3
Query:  291 ECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESEL 524
            E +LVDEND+  G   K   H+  +      LHRA +V++FNS+ +LLLQQR+  K     +W+NTCCSHP   E  L
Sbjct:    5 EVVLVDENDKPTGVMEKQEAHVKGE------LHRAITVYIFNSRQQLLLQQRAEEKYHSGGLWSNTCCSHPAPGEETL 76          
BLAST of DR405720 vs. ExPASy Swiss-Prot
Match: IDI_NOCFA (Isopentenyl-diphosphate Delta-isomerase OS=Nocardia farcinica GN=idi PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.521e-11
Identity = 36/73 (49.32%), Postives = 42/73 (57.53%), Query Frame = 3
Query:  300 LVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRES 518
            LVDE  R VG      C + E       LHRAFSV LF++   +LLQQR+  K  FPL+W NTCC HP   ES
Sbjct:    5 LVDEAGRAVGA-----CPVAEAHRDPGKLHRAFSVLLFDTAGRVLLQQRAAVKTRFPLLWANTCCGHPAPGES 72          
BLAST of DR405720 vs. ExPASy Swiss-Prot
Match: IDI1_PHOLL (Isopentenyl-diphosphate Delta-isomerase 1 OS=Photorhabdus luminescens subsp. laumondii GN=idi1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.521e-11
Identity = 34/72 (47.22%), Postives = 48/72 (66.67%), Query Frame = 3
Query:  288 DECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHP 503
            +  +LVDEND  VG  NK + HL     + + LHRAFS F+ NSK E+ +QQR+ +K+ +P  W+N+ CSHP
Sbjct:    2 ENVVLVDENDNRVGCINKIDAHL-----NGDHLHRAFSCFIINSKNEVYIQQRAQSKLLWPGYWSNSYCSHP 68          
BLAST of DR405720 vs. ExPASy Swiss-Prot
Match: IDI2_AZOSE (Isopentenyl-diphosphate Delta-isomerase 2 OS=Azoarcus sp. (strain EbN1) GN=idi2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 43/104 (41.35%), Postives = 54/104 (51.92%), Query Frame = 3
Query:  285 EDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRES-------ELIEENALGGEECCTKKAF 575
            ED+ ILVDE+D  VG   K   H          LHRA S+F+F+S   L+LQ+R+  K     +W+NTCCSHP   E         L EE    G +C  KKAF
Sbjct:    2 EDQVILVDEHDNKVGFAGKMAAH------QRGALHRAISIFVFDSHSRLMLQRRAAGKYHSGGLWSNTCCSHPRPNEESADAARRRLREEM---GVDCELKKAF 96          
The following BLAST results are available for this feature:
BLAST of DR405720 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
IDI1_AZOSE1.006e-1148.05Isopentenyl-diphosphate Delta-isomerase 1 OS=Azoar... [more]
IDI_ERWCT4.993e-1144.87Isopentenyl-diphosphate Delta-isomerase OS=Erwinia... [more]
IDI_NOCFA6.521e-1149.32Isopentenyl-diphosphate Delta-isomerase OS=Nocardi... [more]
IDI1_PHOLL6.521e-1147.22Isopentenyl-diphosphate Delta-isomerase 1 OS=Photo... [more]
IDI2_AZOSE8.517e-1141.35Isopentenyl-diphosphate Delta-isomerase 2 OS=Azoar... [more]

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Properties
Property NameValue
Genbank descriptionCSAI-PNP1247G11 Developing fruit 24 DAFB Citrus sinensis cDNA clone CSAI-PNP1247G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405720 ID=DR405720; Name=DR405720; organism=Citrus sinensis; type=EST; length=706bp
GGGGTTGCCATATTGAGGTCCCAATGTCTACTACTACGCTTTATAACTGC
GCCACAACCAAACTCTGCTCCTCACTAATCAACAACTCTTCTTCTTTCTC
GAAGTCCCGTCTATTTTTCTCCTCTTCCCATTTCGCCCCTAGGGTTTCTT
CGATTCGCAGGCCTCTGTCCTTGGGAGGTGCCTCTCGTTCTAGCTCTTCT
TCTTCTTCCGCTCGCGCAATCAGCACTATGGGTGACGCTACTACTGATGC
CGGCATGGACGCTGTCCAGCGCCGCCTCATGTTTGAAGACGAATGCATTT
TGGTGGATGAGAATGATCGCGTTGTTGGTCATGAAAACAAATACAACTGT
CACTTGATGGAAAAGATTGAGTCTTTGAATTTGCTACACAGAGCCTTCAG
CGTATTTTTGTTTAACTCAAAATATGAGCTACTCCTTCAGCAACGCTCTG
GAACCAAAGTTACCTTCCCTCTTGTGTGGACTAACACCTGCTGCAGCCAT
CCTCTGTACCGTGAATCTGAGCTTATTGAGGAGAACGCTCTTGGGGGTGA
GGAATGCTGCACAAAGAAAGCTTTTNNNNGAGCTGGGCATTTGTGCTGAA
GATGTGCCAGTTGATGAGTTCACTCCACTGGGTCGCATTCTGTACAAGGC
CCCTTCTGATGGCAAAGTGGGGGGGAGCATGAACTTGACTACTTACTNNN
NNNTGT
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