DR405667

Overview
NameDR405667
Unique NameDR405667
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DR405667 vs. ExPASy Swiss-Prot
Match: TRXB_MYCLE (Bifunctional thioredoxin reductase/thioredoxin OS=Mycobacterium leprae GN=trxB/A PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.601e-11
Identity = 31/78 (39.74%), Postives = 55/78 (70.51%), Query Frame = 3 
Query:  150 IAAKKLIVVDFTASWCPPCKLMSPILSELA-KKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK 380
            +++ K ++VDF A+WC PCK+++P+L E+A ++   +   K+DVD    +A E+ V ++PT +L + G+ ++RIVGAK
Sbjct:  364 LSSNKPVLVDFWATWCGPCKMVAPVLEEIASEQRNQLTVAKLDVDTNPEMAREFQVVSIPTMILFQGGQPVKRIVGAK 441
[Close]
BLAST of DR405667 vs. ExPASy Swiss-Prot
Match: THIO_MYCSM (Thioredoxin OS=Mycobacterium smegmatis GN=trxA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.601e-11
Identity = 32/80 (40.00%), Postives = 53/80 (66.25%), Query Frame = 3 
Query:  150 IAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP---AVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK 380
            + + K ++VDF A+WC PCK+++P+L E+A +      V  + VDVD   + A ++ V ++PT +L K+G  ++RIVGAK
Sbjct:   20 LGSSKPVLVDFWATWCGPCKMVAPVLEEIAAEKGDQLTVAKIDVDVDANPATARDFQVVSIPTMILFKDGAPVKRIVGAK 99
The following BLAST results are available for this feature:
BLAST of DR405667 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
TRXB_MYCLE9.601e-1139.74Bifunctional thioredoxin reductase/thioredoxin OS=... [more]
THIO_MYCSM9.601e-1140.00Thioredoxin OS=Mycobacterium smegmatis GN=trxA PE=... [more]

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Properties
Property NameValue
Genbank descriptionCSAI-PNP1247D16 Developing fruit 24 DAFB Citrus sinensis cDNA clone CSAI-PNP1247D16 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405667 ID=DR405667; Name=DR405667; organism=Citrus sinensis; type=EST; length=652bp
CGGCCGGGGGTCACCAAACACAGAAACAAATATAANNNAATCAGAACAGA
GAAGTAATTTAACTTGTGATCATAATTAAGATGGCCGAGGAGGGACAAGT
GATCAGCTGCCACACTGTTGAATCCTGGAACGAGCAGCTCCAAAAGGGCA
TTGCGGCAAAGAAACTGATAGTGGTGGATTTTACGGCTTCATGGTGCCCG
CCATGCAAGTTGATGTCTCCAATTTTGAGTGAATTGGCGAAGAAGCTGCC
CGCTGTCATATTCTTGAAGGTGGATGTTGATGAATTGAAGTCCGTCGCTG
AGGAATGGGCTGTGGAAGCCATGCCGACCTTTGTACTGACGAAAGAAGGC
AAAGTCCTGGAGAGGATTGTGGGAGCGAAGAAAGATGAGCTGCAGCTGGC
TGTCGAAAAGCACGCAACAACTGTTGAGAATGCAACTACTGCTAATGCTT
GATTGATGCGTACATGAATCTCATTGGTCTTTTATTGTAAGGTGTGTGTT
TGTGGTTGCTTAATGTAAGAATATGGTACCATGTTTAACAGGCCTGTATA
TACGAATAAATGACAATCTTCTAGCAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AA
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