DR405658

Overview
NameDR405658
Unique NameDR405658
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405658 vs. ExPASy Swiss-Prot
Match: IDI1_PONAB (Isopentenyl-diphosphate Delta-isomerase 1 OS=Pongo abelii GN=IDI1 PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 2.085e-42
Identity = 86/148 (58.11%), Postives = 101/148 (68.24%), Query Frame = 3
Query:  228 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKXG 671
            M +  TD  +D  Q +L+ E  CIL+DEND  +G E K NCHL E IE   LLHRAFSVFLFN++ +LLLQQRS  K+T P  +TNTCCSHPL    EL E +ALGVR AAQR+L  ELGI  E+VP +E   L RI YKA SDG  G
Sbjct:    1 MPEINTDH-LDKQQVQLLAE-MCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLLLQQRSDAKITLPGCFTNTCCSHPLSNPGELEENDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWG 145          

HSP 2 Score: 42.743 bits (99), Expect = 2.085e-42
Identity = 15/32 (46.88%), Postives = 26/32 (81.25%), Query Frame = 1
Query:  670 GEHELDYLLFXXRDVSVNPNPDEVAEYKYVNR 765
            GEHE+DY+L   ++V++NP+P+E+  Y YV++
Sbjct:  145 GEHEIDYILLVRKNVTLNPDPNEIKSYCYVSK 176          
BLAST of DR405658 vs. ExPASy Swiss-Prot
Match: IDI1_MOUSE (Isopentenyl-diphosphate Delta-isomerase 1 OS=Mus musculus GN=Idi1 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.733e-41
Identity = 78/139 (56.12%), Postives = 98/139 (70.50%), Query Frame = 3
Query:  255 MDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKXG 671
            +D  Q +L+ E  CIL+DEND  +G + K NCHL E I+   LLHRAFSVFLFN++ +LLLQQRS  K+TFP  +TN+CCSHPL    EL E NA+GV+ AA+R+L  ELGI  E+V ++E   L RI YKA SDG  G
Sbjct:    9 LDEKQVQLLAE-MCILIDENDNKIGADTKKNCHLNENIDK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNSCCSHPLSNPGELEENNAIGVKRAAKRRLKAELGIPLEEVDLNEMDYLTRIYYKAQSDGIWG 145          

HSP 2 Score: 45.0542 bits (105), Expect = 1.733e-41
Identity = 17/35 (48.57%), Postives = 28/35 (80.00%), Query Frame = 1
Query:  670 GEHELDYLLFXXRDVSVNPNPDEVAEYKYVNRGTV 774
            GEHE+DY+LF  ++V++NP+P+E+  Y YV++  V
Sbjct:  145 GEHEVDYILFLRKNVTLNPDPNEIKSYCYVSKEEV 179          
BLAST of DR405658 vs. ExPASy Swiss-Prot
Match: IDI1_RAT (Isopentenyl-diphosphate Delta-isomerase 1 OS=Rattus norvegicus GN=Idi1 PE=2 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.258e-41
Identity = 77/141 (54.61%), Postives = 99/141 (70.21%), Query Frame = 3
Query:  249 AGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKXG 671
            + +D  Q +L+ E  CIL+DEND  +G + K NCHL E I+   L+HRAFSVFLFN++ +LLLQQRS  K+TFP  +TN+CCSHPL    EL E +A+GV+ AAQR+L  ELGI  E+V ++E   L RI YKA SDG  G
Sbjct:    7 SNLDEKQVQLLAE-MCILIDENDNKIGADTKKNCHLNENIDK-GLIHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNSCCSHPLNNPGELEENDAMGVKRAAQRRLKAELGIPLEEVDLNEMNYLTRIYYKAQSDGIWG 145          

HSP 2 Score: 45.0542 bits (105), Expect = 2.258e-41
Identity = 16/32 (50.00%), Postives = 27/32 (84.38%), Query Frame = 1
Query:  670 GEHELDYLLFXXRDVSVNPNPDEVAEYKYVNR 765
            GEHE+DY+LF  ++V++NP+P+E+  Y YV++
Sbjct:  145 GEHEIDYILFLRKNVTLNPDPNEIKSYCYVSK 176          
BLAST of DR405658 vs. ExPASy Swiss-Prot
Match: IDI1_MESAU (Isopentenyl-diphosphate Delta-isomerase 1 OS=Mesocricetus auratus GN=IDI1 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 6.510e-41
Identity = 78/139 (56.12%), Postives = 97/139 (69.78%), Query Frame = 3
Query:  255 MDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKXG 671
            +D  Q +L+ E  CIL+DEND  +G + K NCHL E I+   LLHRAFSVFLFN++ +LLLQQRS  K+TFP  +TN+CCSHPL    EL E +A+GV+ AAQR+L  ELGI  E+V  +E   L RI YKA SDG  G
Sbjct:    9 LDEQQVQLLAE-MCILIDENDNKIGADTKKNCHLNENIDK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNSCCSHPLSNPGELEENDAIGVKRAAQRRLKAELGIPLEEVDPNEMHYLTRIYYKAQSDGIWG 145          

HSP 2 Score: 45.0542 bits (105), Expect = 6.510e-41
Identity = 16/32 (50.00%), Postives = 27/32 (84.38%), Query Frame = 1
Query:  670 GEHELDYLLFXXRDVSVNPNPDEVAEYKYVNR 765
            GEHE+DY+LF  ++V++NP+P+E+  Y YV++
Sbjct:  145 GEHEIDYILFLKKNVTLNPDPNEIKSYCYVSK 176          
BLAST of DR405658 vs. ExPASy Swiss-Prot
Match: IDI1_PHARH (Isopentenyl-diphosphate Delta-isomerase OS=Phaffia rhodozyma GN=IDI PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.966e-36
Identity = 78/140 (55.71%), Postives = 92/140 (65.71%), Query Frame = 3
Query:  258 DAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIES-LNLLHRAFSVFLFN-SKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKXG 671
            D  Q RLM E+ CILV+ +D   G  +K  CHLM  I +  +LLHRAFSVFLF  S   LLLQ+R+  K+TFP +WTNTCCSHPL  + E+ EEN +GVR AA RKL  ELG+     P D FT L RI Y APSDG  G
Sbjct:   23 DEEQVRLM-EERCILVNPDDVAYGEASKKTCHLMSNINAPKDLLHRAFSVFLFRPSDGALLLQRRADEKITFPGMWTNTCCSHPLSIKGEVKEENQIGVRRAASRKLEHELGVPTSSTPPDSFTYLTRIHYLAPSDGLWG 161          

HSP 2 Score: 35.8094 bits (81), Expect = 1.966e-36
Identity = 14/32 (43.75%), Postives = 21/32 (65.62%), Query Frame = 1
Query:  670 GEHELDYLLFXXRDVSVNPNPDEVAEYKYVNR 765
            GEHE+DY+LF         NP+EV++ +YV +
Sbjct:  161 GEHEIDYILFSTTPTEHTGNPNEVSDTRYVTK 192          
BLAST of DR405658 vs. ExPASy Swiss-Prot
Match: IDI2_HUMAN (Isopentenyl-diphosphate Delta-isomerase 2 OS=Homo sapiens GN=IDI2 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.700e-35
Identity = 73/141 (51.77%), Postives = 97/141 (68.79%), Query Frame = 3
Query:  243 TDAGMDAVQRRLM--FEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSD 659
            +D  +D V RR +   E+  I+VDEND+V+G + K NCHL E IE   LLHRAFSV LFN+K  +L+QQRS TKVTFP  +T++C SHPLY  +EL E++A+GVR AAQR+L  ELGI  E +  ++   +    +KA SD
Sbjct:    2 SDINLDWVDRRQLQRLEEMLIVVDENDKVIGADTKRNCHLNENIEK-GLLHRAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQISPEDIVFMTIYHHKAKSD 141          

HSP 2 Score: 34.2686 bits (77), Expect = 4.700e-35
Identity = 13/32 (40.62%), Postives = 22/32 (68.75%), Query Frame = 1
Query:  670 GEHELDYLLFXXRDVSVNPNPDEVAEYKYVNR 765
            GEHE+ YLL   ++V++NP+P E     Y+++
Sbjct:  145 GEHEICYLLLVRKNVTLNPDPSETKSILYLSQ 176          
BLAST of DR405658 vs. ExPASy Swiss-Prot
Match: IDI_DICDI (Isopentenyl-diphosphate Delta-isomerase OS=Dictyostelium discoideum GN=ipi PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 6.600e-34
Identity = 70/136 (51.47%), Postives = 96/136 (70.59%), Query Frame = 3
Query:  252 GMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLY-RESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS 656
            G + +Q  LM ++ECI+VD +D+ +   +K   HLM  I +  LLHRAFS+FLFN + +LLLQQR+  K+TFP  WTNT CSHPL+   SEL+EENA GV+ AA+RKL  ELG+  + V +D+FT + +I YK+ S
Sbjct:   15 GHNEIQIELM-KEECIVVDNDDKPIRPGSKKETHLMVNINN-GLLHRAFSIFLFNGEGKLLLQQRALEKITFPGYWTNTVCSHPLWIVGSELVEENAQGVKIAAKRKLNHELGVPLDQVNIDDFTFMTKIHYKSES 148          

HSP 2 Score: 38.891 bits (89), Expect = 6.600e-34
Identity = 15/33 (45.45%), Postives = 26/33 (78.79%), Query Frame = 1
Query:  670 GEHELDYLLFXXRD-VSVNPNPDEVAEYKYVNR 765
            GEHE+D++L   +D +++N  P+EV +YKYV++
Sbjct:  155 GEHEIDHILIMQKDGITINAEPNEVMDYKYVSQ 187          
BLAST of DR405658 vs. ExPASy Swiss-Prot
Match: IDI1_SCHPO (Isopentenyl-diphosphate Delta-isomerase OS=Schizosaccharomyces pombe GN=idi1 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.285e-31
Identity = 77/141 (54.61%), Postives = 93/141 (65.96%), Query Frame = 3
Query:  258 DAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESE---LIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKXG 671
            D  Q RLM E+ CI+VDEND  + +  K  CHLME I    LLHRAFS+F+F+ +  LLLQQR+  K+TFP +WTNTCCSHPL    E    + E   GV+NAAQRKL  ELGI A+ +P D+F  L RI Y APS G  G
Sbjct:   11 DEEQLRLM-EEVCIVVDENDVPLRYGTKKECHLMENINK-GLLHRAFSMFIFDEQNRLLLQQRAEEKITFPSLWTNTCCSHPLDVAGERGNTLPEAVEGVKNAAQRKLFHELGIQAKYIPKDKFQFLTRIHYLAPSTGAWG 149          
BLAST of DR405658 vs. ExPASy Swiss-Prot
Match: IDI1_YEAST (Isopentenyl-diphosphate Delta-isomerase OS=Saccharomyces cerevisiae GN=IDI1 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.298e-26
Identity = 73/150 (48.67%), Postives = 93/150 (62.00%), Query Frame = 3
Query:  240 TTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESEL-----IEENALGVRNAAQRKLLDELGICAEDVPV-DEFTPLGRILYKAPSDGKXG 671
            T  +G D  Q +LM E+ CI++D +D  +G   K  CHLME IE   LLHRAFSVF+FN + ELLLQQR+  K+TFP +WTNTCCSHPL  + EL     +++   G   AA RKL  ELGI  ++     +F  L RI Y APS+   G
Sbjct:   57 TCFSGHDEEQIKLMNEN-CIVLDWDDNAIGAGTKKVCHLMENIEK-GLLHRAFSVFIFNEQGELLLQQRATEKITFPDLWTNTCCSHPLCIDDELGLKGKLDDKIKGAITAAVRKLDHELGIPEDETKTRGKFHFLNRIHYMAPSNEPWG 204          
BLAST of DR405658 vs. ExPASy Swiss-Prot
Match: IDI_ERWCT (Isopentenyl-diphosphate Delta-isomerase OS=Erwinia carotovora subsp. atroseptica GN=idi PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.781e-16
Identity = 47/124 (37.90%), Postives = 66/124 (53.23%), Query Frame = 3
Query:  291 ECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGI-CAEDVPVDEFTPLGRILYKAPSD 659
            E +LVDEND+  G   K   H+  +      LHRA +V++FNS+ +LLLQQR+  K     +W+NTCCSHP   E  L          AA R+L +E+G+ CA        TP+  + Y+   D
Sbjct:    5 EVVLVDENDKPTGVMEKQEAHVKGE------LHRAITVYIFNSRQQLLLQQRAEEKYHSGGLWSNTCCSHPAPGEETL---------QAAHRRLYEEMGLRCA-------LTPMFTLTYRLQLD 106          

HSP 2 Score: 30.0314 bits (66), Expect = 2.781e-16
Identity = 13/28 (46.43%), Postives = 17/28 (60.71%), Query Frame = 1
Query:  673 EHELDYLLFXXRDVSVNPNPDEVAEYKY 756
            EHEL ++ F   D     NPDEV+ Y+Y
Sbjct:  111 EHELGHVYFGVTDDVPQINPDEVSSYEY 138          
The following BLAST results are available for this feature:
BLAST of DR405658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDI1_PONAB2.085e-4258.11Isopentenyl-diphosphate Delta-isomerase 1 OS=Pongo... [more]
IDI1_MOUSE1.733e-4156.12Isopentenyl-diphosphate Delta-isomerase 1 OS=Mus m... [more]
IDI1_RAT2.258e-4154.61Isopentenyl-diphosphate Delta-isomerase 1 OS=Rattu... [more]
IDI1_MESAU6.510e-4156.12Isopentenyl-diphosphate Delta-isomerase 1 OS=Mesoc... [more]
IDI1_PHARH1.966e-3655.71Isopentenyl-diphosphate Delta-isomerase OS=Phaffia... [more]
IDI2_HUMAN4.700e-3551.77Isopentenyl-diphosphate Delta-isomerase 2 OS=Homo ... [more]
IDI_DICDI6.600e-3451.47Isopentenyl-diphosphate Delta-isomerase OS=Dictyos... [more]
IDI1_SCHPO2.285e-3154.61Isopentenyl-diphosphate Delta-isomerase OS=Schizos... [more]
IDI1_YEAST1.298e-2648.67Isopentenyl-diphosphate Delta-isomerase OS=Sacchar... [more]
IDI_ERWCT2.781e-1637.90Isopentenyl-diphosphate Delta-isomerase OS=Erwinia... [more]

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Properties
Property NameValue
Genbank descriptionCSAI-PNP1247D01 Developing fruit 24 DAFB Citrus sinensis cDNA clone CSAI-PNP1247D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405658 ID=DR405658; Name=DR405658; organism=Citrus sinensis; type=EST; length=776bp
GGGGTTGCCATATTGAGGTCCCAATGTCTACTACTACGCTTTATAACTGC
GCCACAACCAAACTCTGCTCCTCACTAATCAACAACTCTTCTTCTTTCTC
GAAGTCCCGTCTATTTTTCTCCTCTTCCCATTTCGCCCCTAGGGTTTCTT
CGATTCGCAGGCCTCTGTCCTTGGGAGGTGCCTCTCGTTCTAGCTCTTCT
TCTTCTTCCGCTCGCGCAATCAGCACTATGGGTGACGCTACTACTGATGC
CGGCATGGACGCTGTCCAGCGCCGCCTCATGTTTGAAGACGAATGCATTT
TGGTGGATGAGAATGATCGCGTTGTTGGTCATGAAAACAAATACAACTGT
CACTTGATGGAAAAGATTGAGTCTTTGAATTTGCTACACAGAGCCTTCAG
CGTATTTTTGTTTAACTCAAAATATGAGCTACTCCTTCAGCAACGCTCTG
GAACCAAAGTTACCTTCCCTCTTGTGTGGACTAACACCTGCTGCAGCCAT
CCTCTGTACCGTGAATCTGAGCTTATTGAGGAGAACGCTCTTGGGGTGAG
GAATGCTGCACAAAGAAAGCTTTTGGATGAGCTGGGCATTTGTGCTGAAG
ATGTGCCAGTTGATGAGTTCACTCCACTGGGTCGCATTCTGTACAAGGCC
CCTTCTGATGGCAAGTGNGGGGGAGCATGAACTTGACTACTTACTTTTCA
NNNTCCGAGATGTTAGTGTTAACCCAAATCCTGATGAAGTAGCCGAGTAT
AAATATGTCAACCGGGGAACAGTTAA
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