DR405658

Overview
NameDR405658
Unique NameDR405658
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405658 vs. ExPASy Swiss-Prot
Match: IDI_NOCFA (Isopentenyl-diphosphate Delta-isomerase OS=Nocardia farcinica GN=idi PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.034e-15
Identity = 44/99 (44.44%), Postives = 53/99 (53.54%), Query Frame = 3
Query:  300 LVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICA 596
            LVDE  R VG      C + E       LHRAFSV LF++   +LLQQR+  K  FPL+W NTCC HP   ES         V  AA  +L +ELG+ A
Sbjct:    5 LVDEAGRAVGA-----CPVAEAHRDPGKLHRAFSVLLFDTAGRVLLQQRAAVKTRFPLLWANTCCGHPAPGES---------VEAAAATRLAEELGVAA 89          

HSP 2 Score: 29.6462 bits (65), Expect = 1.034e-15
Identity = 13/34 (38.24%), Postives = 20/34 (58.82%), Query Frame = 1
Query:  673 EHELDYLLFXXRDVSVNPNPDEVAEYKYVNRGTV 774
            EHE D++L    D + +P+P EVA  ++V    V
Sbjct:  110 EHEWDHVLIGTLDTTPHPDPAEVANLRWVRPAEV 143          
BLAST of DR405658 vs. ExPASy Swiss-Prot
Match: IDI_SERP5 (Isopentenyl-diphosphate Delta-isomerase OS=Serratia proteamaculans (strain 568) GN=idi PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.296e-15
Identity = 53/142 (37.32%), Postives = 73/142 (51.41%), Query Frame = 3
Query:  285 EDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRI-----------LYKAPSDGKXGGA 677
            ++  ILVD +D  +G ++K   H         LLHRAFS+F+F+S+  LLLQQR+ +K     +WTN+CC HP + ES L          AAQR+L +E+G  AE   V  FT    +           +Y    DGK  GA
Sbjct:    2 DEMLILVDADDNAIGSQSKTRVHQQ------GLLHRAFSIFIFDSQGRLLLQQRAFSKYHSAGLWTNSCCGHPRWGESTLA---------AAQRRLQEEMGFSAELQQVSSFTYQAAVPGDLIEHEFDHIYVGLFDGKPQGA 128          
BLAST of DR405658 vs. ExPASy Swiss-Prot
Match: IDI2_AZOSE (Isopentenyl-diphosphate Delta-isomerase 2 OS=Azoarcus sp. (strain EbN1) GN=idi2 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.089e-14
Identity = 41/105 (39.05%), Postives = 57/105 (54.29%), Query Frame = 3
Query:  285 EDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 599
            ED+ ILVDE+D  VG   K   H          LHRA S+F+F+S   L+LQ+R+  K     +W+NTCCSHP   E            +AA+R+L +E+G+  E
Sbjct:    2 EDQVILVDEHDNKVGFAGKMAAH------QRGALHRAISIFVFDSHSRLMLQRRAAGKYHSGGLWSNTCCSHPRPNEES---------ADAARRRLREEMGVDCE 91          

HSP 2 Score: 28.8758 bits (63), Expect = 1.089e-14
Identity = 12/30 (40.00%), Postives = 18/30 (60.00%), Query Frame = 1
Query:  673 EHELDYLLFXXRDVSVNPNPDEVAEYKYVN 762
            EHE D++ F   D     NPDE  ++K+V+
Sbjct:  110 EHEFDHVFFGNHDGRPVLNPDEADDWKWVD 139          
BLAST of DR405658 vs. ExPASy Swiss-Prot
Match: IDI1_AZOSE (Isopentenyl-diphosphate Delta-isomerase 1 OS=Azoarcus sp. (strain EbN1) GN=idi1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.654e-14
Identity = 45/105 (42.86%), Postives = 59/105 (56.19%), Query Frame = 3
Query:  285 EDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAE 599
            ED+ ILVDEND  +G E K   H          LHRA S+F+F+S   LLLQ+R+ +K     +W+NTCCSHP  RE             AA+R+L +E+GI  E
Sbjct:    2 EDQVILVDENDTEIGVEGKMIAHRSGS------LHRAISIFIFDSADRLLLQKRAASKYHSAGLWSNTCCSHPRPREE---------CARAARRRLREEMGIACE 91          
BLAST of DR405658 vs. ExPASy Swiss-Prot
Match: IDI1_PHOLL (Isopentenyl-diphosphate Delta-isomerase 1 OS=Photorhabdus luminescens subsp. laumondii GN=idi1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.530e-13
Identity = 42/107 (39.25%), Postives = 61/107 (57.01%), Query Frame = 3
Query:  288 DECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVP 608
            +  +LVDEND  VG  NK + HL     + + LHRAFS F+ NSK E+ +QQR+ +K+ +P  W+N+ CSHP   E          + +A  R+  +ELGI   + P
Sbjct:    2 ENVVLVDENDNRVGCINKIDAHL-----NGDHLHRAFSCFIINSKNEVYIQQRAQSKLLWPGYWSNSYCSHPRPDEE---------ISHAVMRRAEEELGIVINEEP 94          

HSP 2 Score: 22.7126 bits (47), Expect = 2.530e-13
Identity = 10/30 (33.33%), Postives = 15/30 (50.00%), Query Frame = 1
Query:  673 EHELDYLLFXXRDVSVNPNPDEVAEYKYVN 762
            EHEL ++     D     NP EV+   ++N
Sbjct:  112 EHELCHVFVVFTDTPPTENPKEVSAGFFIN 141          
BLAST of DR405658 vs. ExPASy Swiss-Prot
Match: IDI2_PHOLL (Isopentenyl-diphosphate Delta-isomerase 2 OS=Photorhabdus luminescens subsp. laumondii GN=idi2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.530e-13
Identity = 39/97 (40.21%), Postives = 57/97 (58.76%), Query Frame = 3
Query:  297 ILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELG 587
            +LVD++D  +G   K + H         +LHRAFS+F+F++K  LLLQ+R+ TK     +WTN+CC HP  R  E +E        AA R+L +E+G
Sbjct:    6 VLVDKHDNPIGSAGKADIH------QKGMLHRAFSIFVFDNKGNLLLQKRAATKYHSAGLWTNSCCGHP--RVGEALEA-------AAHRRLGEEMG 87          

HSP 2 Score: 26.5646 bits (57), Expect = 2.530e-13
Identity = 14/43 (32.56%), Postives = 23/43 (53.49%), Query Frame = 1
Query:  634 AFCTRPLLMASXGEHELDYLLFXXRDVSVNPNPDEVAEYKYVN 762
            +F    +L  +  E+E D++     D     N DEV++YK+VN
Sbjct:   97 SFIYHAILPNNLIEYEYDHVFIGRFDKEPIINLDEVSDYKWVN 139          
BLAST of DR405658 vs. ExPASy Swiss-Prot
Match: IDI_BURM1 (Isopentenyl-diphosphate Delta-isomerase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=idi PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.547e-13
Identity = 45/110 (40.91%), Postives = 61/110 (55.45%), Query Frame = 3
Query:  285 EDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVD 614
            E+  ILVD +DR +G   K   H         LLHRAFS+F+F+S   LLLQQR+  K     +W+NTCC HP  RE+         + +A +R+L +E+G   E  PVD
Sbjct:    2 EERLILVDTDDRPIGICEKMRAH------HEGLLHRAFSIFVFDSAGRLLLQQRALNKYHSGGLWSNTCCGHPRPREA---------LPDAVRRRLGEEMGFACELRPVD 96          

HSP 2 Score: 20.4014 bits (41), Expect = 5.547e-13
Identity = 10/34 (29.41%), Postives = 20/34 (58.82%), Query Frame = 1
Query:  673 EHELDYLLFXXRDVSVNPNPDEVAEYKYVNRGTV 774
            EHE  ++     D +V P+  EVA +++++  T+
Sbjct:  110 EHEFVHIHVGRFDGTVAPDFAEVAAWRWIDVPTL 143          
BLAST of DR405658 vs. ExPASy Swiss-Prot
Match: IDI_HALHL (Isopentenyl-diphosphate Delta-isomerase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=idi PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.052e-12
Identity = 43/112 (38.39%), Postives = 58/112 (51.79%), Query Frame = 3
Query:  288 DECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFT 623
            +  ++VD   + VG E K   H          LH AF VF+FN + ELLLQ+R+ +K  F  +W+NTCC HP   E         GV  AA+R+L +E G      PV +FT
Sbjct:    2 EHVVIVDPEGQRVGTEEKIRAHA-----DGGTLHLAFCVFVFNPRGELLLQRRADSKYHFSGLWSNTCCGHPRPGE---------GVTEAAERRLGEEFGFVTRLHPVAQFT 99          
BLAST of DR405658 vs. ExPASy Swiss-Prot
Match: IDI_STRCO (Isopentenyl-diphosphate Delta-isomerase OS=Streptomyces coelicolor GN=idi PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.649e-11
Identity = 40/97 (41.24%), Postives = 52/97 (53.61%), Query Frame = 3
Query:  300 LVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGI 590
            LVDEN   +G   K + H     +    LHRAFSVFLF+ +  LL+QQR+  K   P VW+NTCC HP   E+            AA R+  +ELG+
Sbjct:   24 LVDENGVTIGTAEKLSAH-----QPPGRLHRAFSVFLFDERGRLLIQQRALGKYHSPGVWSNTCCGHPYPGEAPFA---------AAARRTFEELGV 106          

HSP 2 Score: 21.557 bits (44), Expect = 1.649e-11
Identity = 9/30 (30.00%), Postives = 16/30 (53.33%), Query Frame = 1
Query:  673 EHELDYLLFXXRDVSVNPNPDEVAEYKYVN 762
            E E ++L        + P+P+EVA   +V+
Sbjct:  130 EQEYNHLFVGLVQAELRPDPEEVAGTAFVS 159          
BLAST of DR405658 vs. ExPASy Swiss-Prot
Match: IDI_SACEN (Isopentenyl-diphosphate Delta-isomerase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=idi PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.642e-11
Identity = 40/121 (33.06%), Postives = 67/121 (55.37%), Query Frame = 3
Query:  288 DECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKA 650
            ++ +L++++ + +G  +K   H ++       LH AFS ++FN + +LLL QR+  K T+P VWTNTCC HP  +E+         +  A  R+L +ELG+   D+ +     L R  Y+A
Sbjct:    2 EQVVLLNDSGQAIGVTDKATVHHLD-----TPLHLAFSCYVFNGRGQLLLTQRAHEKRTWPGVWTNTCCGHPAPQEA---------MPEAITRRLGEELGLTVRDLTL----VLPRFRYRA 104          
The following BLAST results are available for this feature:
BLAST of DR405658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDI_NOCFA1.034e-1544.44Isopentenyl-diphosphate Delta-isomerase OS=Nocardi... [more]
IDI_SERP52.296e-1537.32Isopentenyl-diphosphate Delta-isomerase OS=Serrati... [more]
IDI2_AZOSE1.089e-1439.05Isopentenyl-diphosphate Delta-isomerase 2 OS=Azoar... [more]
IDI1_AZOSE5.654e-1442.86Isopentenyl-diphosphate Delta-isomerase 1 OS=Azoar... [more]
IDI1_PHOLL2.530e-1339.25Isopentenyl-diphosphate Delta-isomerase 1 OS=Photo... [more]
IDI2_PHOLL2.530e-1340.21Isopentenyl-diphosphate Delta-isomerase 2 OS=Photo... [more]
IDI_BURM15.547e-1340.91Isopentenyl-diphosphate Delta-isomerase OS=Burkhol... [more]
IDI_HALHL4.052e-1238.39Isopentenyl-diphosphate Delta-isomerase OS=Halorho... [more]
IDI_STRCO1.649e-1141.24Isopentenyl-diphosphate Delta-isomerase OS=Strepto... [more]
IDI_SACEN7.642e-1133.06Isopentenyl-diphosphate Delta-isomerase OS=Sacchar... [more]

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Properties
Property NameValue
Genbank descriptionCSAI-PNP1247D01 Developing fruit 24 DAFB Citrus sinensis cDNA clone CSAI-PNP1247D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405658 ID=DR405658; Name=DR405658; organism=Citrus sinensis; type=EST; length=776bp
GGGGTTGCCATATTGAGGTCCCAATGTCTACTACTACGCTTTATAACTGC
GCCACAACCAAACTCTGCTCCTCACTAATCAACAACTCTTCTTCTTTCTC
GAAGTCCCGTCTATTTTTCTCCTCTTCCCATTTCGCCCCTAGGGTTTCTT
CGATTCGCAGGCCTCTGTCCTTGGGAGGTGCCTCTCGTTCTAGCTCTTCT
TCTTCTTCCGCTCGCGCAATCAGCACTATGGGTGACGCTACTACTGATGC
CGGCATGGACGCTGTCCAGCGCCGCCTCATGTTTGAAGACGAATGCATTT
TGGTGGATGAGAATGATCGCGTTGTTGGTCATGAAAACAAATACAACTGT
CACTTGATGGAAAAGATTGAGTCTTTGAATTTGCTACACAGAGCCTTCAG
CGTATTTTTGTTTAACTCAAAATATGAGCTACTCCTTCAGCAACGCTCTG
GAACCAAAGTTACCTTCCCTCTTGTGTGGACTAACACCTGCTGCAGCCAT
CCTCTGTACCGTGAATCTGAGCTTATTGAGGAGAACGCTCTTGGGGTGAG
GAATGCTGCACAAAGAAAGCTTTTGGATGAGCTGGGCATTTGTGCTGAAG
ATGTGCCAGTTGATGAGTTCACTCCACTGGGTCGCATTCTGTACAAGGCC
CCTTCTGATGGCAAGTGNGGGGGAGCATGAACTTGACTACTTACTTTTCA
NNNTCCGAGATGTTAGTGTTAACCCAAATCCTGATGAAGTAGCCGAGTAT
AAATATGTCAACCGGGGAACAGTTAA
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