DR405590

Overview
NameDR405590
Unique NameDR405590
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DR405590 vs. ExPASy Swiss-Prot
Match: RK33_NICTO (50S ribosomal protein L33, chloroplastic OS=Nicotiana tomentosiformis GN=rpl33 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.149e-29
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 686
            MAKGK+VRV VILECTSCVRN V+K SRGISRYITQKNRHNTP+RLEL+KFCPYCYKHT+HGEIKK
Sbjct:    1 MAKGKDVRVTVILECTSCVRNSVDKVSRGISRYITQKNRHNTPNRLELKKFCPYCYKHTIHGEIKK 66
[Close]
BLAST of DR405590 vs. ExPASy Swiss-Prot
Match: RK33_NICSY (50S ribosomal protein L33, chloroplastic OS=Nicotiana sylvestris GN=rpl33 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.149e-29
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 686
            MAKGK+VRV VILECTSCVRN V+K SRGISRYITQKNRHNTP+RLEL+KFCPYCYKHT+HGEIKK
Sbjct:    1 MAKGKDVRVTVILECTSCVRNSVDKVSRGISRYITQKNRHNTPNRLELKKFCPYCYKHTIHGEIKK 66
[Close]
BLAST of DR405590 vs. ExPASy Swiss-Prot
Match: RK33_FAGEA (50S ribosomal protein L33, chloroplastic OS=Fagopyrum esculentum subsp. ancestrale GN=rpl33 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.149e-29
Identity = 59/66 (89.39%), Postives = 61/66 (92.42%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 686
            MAKGK+ RV VILECTSCVR  VNKESRGISRYITQKNR NTPSRLELRKFCPYCYKHT+HGEIKK
Sbjct:    1 MAKGKDARVSVILECTSCVRKNVNKESRGISRYITQKNRRNTPSRLELRKFCPYCYKHTIHGEIKK 66
[Close]
BLAST of DR405590 vs. ExPASy Swiss-Prot
Match: RK33_ATRBE (50S ribosomal protein L33, chloroplastic OS=Atropa belladonna GN=rpl33 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.149e-29
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 686
            MAKGK+VRV VILECTSCVRN V+K SRGISRYITQKNRHNTP+RLEL+KFCPYCYKHT+HGEIKK
Sbjct:    1 MAKGKDVRVTVILECTSCVRNSVDKVSRGISRYITQKNRHNTPNRLELKKFCPYCYKHTIHGEIKK 66
[Close]
BLAST of DR405590 vs. ExPASy Swiss-Prot
Match: RK33_ARATH (50S ribosomal protein L33, chloroplastic OS=Arabidopsis thaliana GN=rpl33 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.149e-29
Identity = 57/66 (86.36%), Postives = 62/66 (93.94%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 686
            MAKGK+VRV +ILECTSCVRN + KE+ GISRYITQKNRHNTPSRLELRKFCPYCYKHT+HGEIKK
Sbjct:    1 MAKGKDVRVTIILECTSCVRNDIKKEAAGISRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIKK 66
[Close]
BLAST of DR405590 vs. ExPASy Swiss-Prot
Match: RK33_ARAHI (50S ribosomal protein L33, chloroplastic OS=Arabis hirsuta GN=rpl33 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.419e-29
Identity = 57/66 (86.36%), Postives = 62/66 (93.94%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 686
            MAKGK+VRV +ILECTSCVRN + KES GISRYITQKNRHNTPSRLELRKFCPYC+KHT+HGEIKK
Sbjct:    1 MAKGKDVRVTIILECTSCVRNDIKKESAGISRYITQKNRHNTPSRLELRKFCPYCFKHTIHGEIKK 66
[Close]
BLAST of DR405590 vs. ExPASy Swiss-Prot
Match: RK33_AETGR (50S ribosomal protein L33, chloroplastic OS=Aethionema grandiflora GN=rpl33 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.419e-29
Identity = 57/66 (86.36%), Postives = 62/66 (93.94%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 686
            MAKGK+VRV +ILECT+CVRN + KES GISRYITQKNRHNTPSRLELRKFCPYCYKHT+HGEIKK
Sbjct:    1 MAKGKDVRVTIILECTNCVRNDIKKESPGISRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIKK 66
[Close]
BLAST of DR405590 vs. ExPASy Swiss-Prot
Match: RK33_MORIN (50S ribosomal protein L33, chloroplastic OS=Morus indica GN=rpl33 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.243e-29
Identity = 57/66 (86.36%), Postives = 62/66 (93.94%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 686
            MAKGK+ RV +ILECTSC+RN VNKESRGISRYITQKNRHNTPSRLELRKFCP CYKHT+HGE+KK
Sbjct:    1 MAKGKDARVTIILECTSCLRNRVNKESRGISRYITQKNRHNTPSRLELRKFCPSCYKHTIHGELKK 66
[Close]
BLAST of DR405590 vs. ExPASy Swiss-Prot
Match: RK33_HELAN (50S ribosomal protein L33, chloroplastic OS=Helianthus annuus GN=rpl33 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.243e-29
Identity = 56/66 (84.85%), Postives = 62/66 (93.94%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 686
            MAKGK+ R+ V+LECT+CVRNGVNKES GISRYITQKNRHNTP+RLEL KFCPYCYKHT+HGEIKK
Sbjct:    1 MAKGKDARIPVLLECTACVRNGVNKESTGISRYITQKNRHNTPNRLELLKFCPYCYKHTIHGEIKK 66
[Close]
BLAST of DR405590 vs. ExPASy Swiss-Prot
Match: RK33_SOLTU (50S ribosomal protein L33, chloroplastic OS=Solanum tuberosum GN=rpl33 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.207e-28
Identity = 57/66 (86.36%), Postives = 62/66 (93.94%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 686
            MAKGK+VRV VILECTSCVRN V+K SRGISRYITQKNRHNTP+R EL+KFCPYCYKHT+HGEIKK
Sbjct:    1 MAKGKDVRVTVILECTSCVRNSVDKVSRGISRYITQKNRHNTPNRFELKKFCPYCYKHTIHGEIKK 66
The following BLAST results are available for this feature:
BLAST of DR405590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
RK33_NICTO4.149e-2987.8850S ribosomal protein L33, chloroplastic OS=Nicoti... [more]
RK33_NICSY4.149e-2987.8850S ribosomal protein L33, chloroplastic OS=Nicoti... [more]
RK33_FAGEA4.149e-2989.3950S ribosomal protein L33, chloroplastic OS=Fagopy... [more]
RK33_ATRBE4.149e-2987.8850S ribosomal protein L33, chloroplastic OS=Atropa... [more]
RK33_ARATH4.149e-2986.3650S ribosomal protein L33, chloroplastic OS=Arabid... [more]
RK33_ARAHI5.419e-2986.3650S ribosomal protein L33, chloroplastic OS=Arabis... [more]
RK33_AETGR5.419e-2986.3650S ribosomal protein L33, chloroplastic OS=Aethio... [more]
RK33_MORIN9.243e-2986.3650S ribosomal protein L33, chloroplastic OS=Morus ... [more]
RK33_HELAN9.243e-2984.8550S ribosomal protein L33, chloroplastic OS=Helian... [more]
RK33_SOLTU1.207e-2886.3650S ribosomal protein L33, chloroplastic OS=Solanu... [more]

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Properties
Property NameValue
Genbank descriptionCSAD-PNP1242O20 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone CSAD-PNP1242O20 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405590 ID=DR405590; Name=DR405590; organism=Citrus sinensis; type=EST; length=718bp
GGGGGAACGGGGTGAAGAAGATTAGAGCTAGAATCAAATATTTGTGACTA
ATCTCTCTTTCCCCTCTTTTCGTTTTTTTGTTTTACAATTAGAAAGAAGG
AAAGCGAAAGAAAAAAGGTGGCTTCAACCTCAGCGAAACCCGGGTTCAGG
CTCCGATTAAATTAATTATTAATTATCCAGTTAAAAGCAAATAGACAGGT
AAAAGAAAACGGAAATCGAAATATGGCTAGGGTAAGAGTATCCTCCACTA
CAAGATCCTTAAATGAAATACTGGACTGCGATTTAGCAATATAGTTAGAA
ATTCTTGTATTACTTATTATTTTTTATTTTGATTTCCTATTTATTTACTA
TATTGATTGCAATAAAATCTTTATTTCATAAGTTTTTTTTGAGTGGTTAG
CAACTTCTATTTTTTTGTCCCGTGCTTCTTATTCGTTGCGGGTCGGAAAA
TAGAAAAGTTGGGTGAATCAAAAACCCCAAGGAGGTTCATGGCCAAGGGT
AAAGAGGTCCGAGTAAGGGTTATTTTGGAATGTACTAGTTGTGTTCGAAA
CGGTGTTAATAAGGAATCAAGGGGTATTTCCAGATATATTACTCAAAAGA
ATCGACACAATACACCCAGTCGATTGGAATTGAGAAAATTCTGTCCCTAT
TGTTACAAGCATACACTTCATGGGGAGATAAAAAAATAGATAGAGTCAAG
CCGCGTGCTTTTGTGTCA
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