DR405590

Overview
NameDR405590
Unique NameDR405590
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405590 vs. ExPASy Swiss-Prot
Match: RK33_SORBI (50S ribosomal protein L33, chloroplastic OS=Sorghum bicolor GN=rpl33 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.635e-25
Identity = 53/66 (80.30%), Postives = 56/66 (84.85%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 686
            MAKGK+VR+RVILEC SCVR G NKES GISRY TQKNRHNTP +LELRKFC YC KHT H EIKK
Sbjct:    1 MAKGKDVRIRVILECISCVRKGTNKESTGISRYSTQKNRHNTPGQLELRKFCRYCRKHTTHNEIKK 66          
BLAST of DR405590 vs. ExPASy Swiss-Prot
Match: RK33_SACOF (50S ribosomal protein L33, chloroplastic OS=Saccharum officinarum GN=rpl33 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.635e-25
Identity = 53/66 (80.30%), Postives = 56/66 (84.85%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 686
            MAKGK+VR+RVILEC SCVR G NKES GISRY TQKNRHNTP +LELRKFC YC KHT H EIKK
Sbjct:    1 MAKGKDVRIRVILECISCVRKGTNKESTGISRYSTQKNRHNTPGQLELRKFCRYCRKHTTHNEIKK 66          
BLAST of DR405590 vs. ExPASy Swiss-Prot
Match: RK33_SACHY (50S ribosomal protein L33, chloroplastic OS=Saccharum hybrid GN=rpl33 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.635e-25
Identity = 53/66 (80.30%), Postives = 56/66 (84.85%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 686
            MAKGK+VR+RVILEC SCVR G NKES GISRY TQKNRHNTP +LELRKFC YC KHT H EIKK
Sbjct:    1 MAKGKDVRIRVILECISCVRKGTNKESTGISRYSTQKNRHNTPGQLELRKFCRYCRKHTTHNEIKK 66          
BLAST of DR405590 vs. ExPASy Swiss-Prot
Match: RK33_PHAAO (50S ribosomal protein L33, chloroplastic OS=Phalaenopsis aphrodite subsp. formosana GN=rpl33 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.635e-25
Identity = 52/66 (78.79%), Postives = 58/66 (87.88%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 686
            MAKGK++R+ VILECT CVR GVNKE  GISRYITQKNRHNTP+RLE RKFC YC K+T+HGEIKK
Sbjct:    1 MAKGKDIRIIVILECTCCVRKGVNKELLGISRYITQKNRHNTPNRLEFRKFCRYCQKYTIHGEIKK 66          
BLAST of DR405590 vs. ExPASy Swiss-Prot
Match: RK33_MAIZE (50S ribosomal protein L33, chloroplastic OS=Zea mays GN=rpl33 PE=3 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 3.635e-25
Identity = 53/66 (80.30%), Postives = 56/66 (84.85%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 686
            MAKGK+VR+RVILEC SCVR G NKES GISRY TQKNRHNTP +LELRKFC YC KHT H EIKK
Sbjct:    1 MAKGKDVRIRVILECISCVRKGTNKESTGISRYSTQKNRHNTPGQLELRKFCRYCRKHTTHNEIKK 66          
BLAST of DR405590 vs. ExPASy Swiss-Prot
Match: RK33_ORYSJ (50S ribosomal protein L33, chloroplastic OS=Oryza sativa subsp. japonica GN=rpl33 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.097e-25
Identity = 51/66 (77.27%), Postives = 57/66 (86.36%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 686
            MAKGK+VR+RVIL+C SCVR G N+ES GISRY TQKNRHNTP +LELRKFC YC KHT+H EIKK
Sbjct:    1 MAKGKDVRIRVILQCVSCVRKGANEESAGISRYSTQKNRHNTPGQLELRKFCRYCRKHTIHAEIKK 66          
BLAST of DR405590 vs. ExPASy Swiss-Prot
Match: RK33_ORYSI (50S ribosomal protein L33, chloroplastic OS=Oryza sativa subsp. indica GN=rpl33 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.097e-25
Identity = 51/66 (77.27%), Postives = 57/66 (86.36%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 686
            MAKGK+VR+RVIL+C SCVR G N+ES GISRY TQKNRHNTP +LELRKFC YC KHT+H EIKK
Sbjct:    1 MAKGKDVRIRVILQCVSCVRKGANEESAGISRYSTQKNRHNTPGQLELRKFCRYCRKHTIHAEIKK 66          
BLAST of DR405590 vs. ExPASy Swiss-Prot
Match: RK33_ORYSA (50S ribosomal protein L33, chloroplastic OS=Oryza sativa GN=rpl33 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.097e-25
Identity = 51/66 (77.27%), Postives = 57/66 (86.36%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 686
            MAKGK+VR+RVIL+C SCVR G N+ES GISRY TQKNRHNTP +LELRKFC YC KHT+H EIKK
Sbjct:    1 MAKGKDVRIRVILQCVSCVRKGANEESAGISRYSTQKNRHNTPGQLELRKFCRYCRKHTIHAEIKK 66          
BLAST of DR405590 vs. ExPASy Swiss-Prot
Match: RK33_ORYNI (50S ribosomal protein L33, chloroplastic OS=Oryza nivara GN=rpl33 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.097e-25
Identity = 51/66 (77.27%), Postives = 57/66 (86.36%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 686
            MAKGK+VR+RVIL+C SCVR G N+ES GISRY TQKNRHNTP +LELRKFC YC KHT+H EIKK
Sbjct:    1 MAKGKDVRIRVILQCVSCVRKGANEESAGISRYSTQKNRHNTPGQLELRKFCRYCRKHTIHAEIKK 66          
BLAST of DR405590 vs. ExPASy Swiss-Prot
Match: RK33_CUSRE (50S ribosomal protein L33, plastid OS=Cuscuta reflexa GN=rpl33 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.953e-24
Identity = 53/68 (77.94%), Postives = 57/68 (83.82%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVN--KESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 686
            MAK K VRV VILECTSC +N VN  K + GISRYITQKNRHNTP+RLE +KFCP CYKHTLHGEIKK
Sbjct:    1 MAKTKNVRVTVILECTSCAQNNVNVNKVATGISRYITQKNRHNTPNRLEFKKFCPRCYKHTLHGEIKK 68          
The following BLAST results are available for this feature:
BLAST of DR405590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
RK33_SORBI3.635e-2580.3050S ribosomal protein L33, chloroplastic OS=Sorghu... [more]
RK33_SACOF3.635e-2580.3050S ribosomal protein L33, chloroplastic OS=Saccha... [more]
RK33_SACHY3.635e-2580.3050S ribosomal protein L33, chloroplastic OS=Saccha... [more]
RK33_PHAAO3.635e-2578.7950S ribosomal protein L33, chloroplastic OS=Phalae... [more]
RK33_MAIZE3.635e-2580.3050S ribosomal protein L33, chloroplastic OS=Zea ma... [more]
RK33_ORYSJ8.097e-2577.2750S ribosomal protein L33, chloroplastic OS=Oryza ... [more]
RK33_ORYSI8.097e-2577.2750S ribosomal protein L33, chloroplastic OS=Oryza ... [more]
RK33_ORYSA8.097e-2577.2750S ribosomal protein L33, chloroplastic OS=Oryza ... [more]
RK33_ORYNI8.097e-2577.2750S ribosomal protein L33, chloroplastic OS=Oryza ... [more]
RK33_CUSRE8.953e-2477.9450S ribosomal protein L33, plastid OS=Cuscuta refl... [more]

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Properties
Property NameValue
Genbank descriptionCSAD-PNP1242O20 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone CSAD-PNP1242O20 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405590 ID=DR405590; Name=DR405590; organism=Citrus sinensis; type=EST; length=718bp
GGGGGAACGGGGTGAAGAAGATTAGAGCTAGAATCAAATATTTGTGACTA
ATCTCTCTTTCCCCTCTTTTCGTTTTTTTGTTTTACAATTAGAAAGAAGG
AAAGCGAAAGAAAAAAGGTGGCTTCAACCTCAGCGAAACCCGGGTTCAGG
CTCCGATTAAATTAATTATTAATTATCCAGTTAAAAGCAAATAGACAGGT
AAAAGAAAACGGAAATCGAAATATGGCTAGGGTAAGAGTATCCTCCACTA
CAAGATCCTTAAATGAAATACTGGACTGCGATTTAGCAATATAGTTAGAA
ATTCTTGTATTACTTATTATTTTTTATTTTGATTTCCTATTTATTTACTA
TATTGATTGCAATAAAATCTTTATTTCATAAGTTTTTTTTGAGTGGTTAG
CAACTTCTATTTTTTTGTCCCGTGCTTCTTATTCGTTGCGGGTCGGAAAA
TAGAAAAGTTGGGTGAATCAAAAACCCCAAGGAGGTTCATGGCCAAGGGT
AAAGAGGTCCGAGTAAGGGTTATTTTGGAATGTACTAGTTGTGTTCGAAA
CGGTGTTAATAAGGAATCAAGGGGTATTTCCAGATATATTACTCAAAAGA
ATCGACACAATACACCCAGTCGATTGGAATTGAGAAAATTCTGTCCCTAT
TGTTACAAGCATACACTTCATGGGGAGATAAAAAAATAGATAGAGTCAAG
CCGCGTGCTTTTGTGTCA
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