DR405590

Overview
NameDR405590
Unique NameDR405590
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405590 vs. ExPASy Swiss-Prot
Match: RK33_WHEAT (50S ribosomal protein L33, chloroplastic OS=Triticum aestivum GN=rpl33 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.169e-23
Identity = 50/66 (75.76%), Postives = 55/66 (83.33%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 686
            MAKGK+VR+RVILEC SCVR G N+ES GISRY TQKNRHNTP +LE +KFC YC KHT H EIKK
Sbjct:    1 MAKGKDVRIRVILECISCVRKGANEESTGISRYSTQKNRHNTPGQLEFKKFCRYCRKHTTHHEIKK 66          
BLAST of DR405590 vs. ExPASy Swiss-Prot
Match: RK33_SOYBN (50S ribosomal protein L33, chloroplastic OS=Glycine max GN=rpl33 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.169e-23
Identity = 51/66 (77.27%), Postives = 56/66 (84.85%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 686
            MAKGK++RV VILECT C +  VNKES GISRYIT+KNR NTPSRLELRKFCP C KHT+H EIKK
Sbjct:    1 MAKGKDIRVIVILECTGCDKKSVNKESTGISRYITKKNRQNTPSRLELRKFCPRCCKHTIHAEIKK 66          
BLAST of DR405590 vs. ExPASy Swiss-Prot
Match: RK33_LOLPR (50S ribosomal protein L33, chloroplastic OS=Lolium perenne GN=rpl33 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.169e-23
Identity = 50/66 (75.76%), Postives = 55/66 (83.33%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 686
            MAKGK+VR+RVILEC SCVR G N+ES GISRY TQKNRHNTP +LE +KFC YC KHT H EIKK
Sbjct:    1 MAKGKDVRIRVILECISCVRKGANEESTGISRYSTQKNRHNTPGQLEFKKFCRYCRKHTTHHEIKK 66          
BLAST of DR405590 vs. ExPASy Swiss-Prot
Match: RK33_LEMMI (50S ribosomal protein L33, chloroplastic OS=Lemna minor GN=rpl33 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.169e-23
Identity = 52/68 (76.47%), Postives = 58/68 (85.29%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRN--GVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 686
            MAKGK+VRVRVILEC SC RN  GV KE  G+SRY+TQKNRHNTPSRLEL+KFC YC KHT+H E+KK
Sbjct:    1 MAKGKDVRVRVILECNSCGRNENGVTKEVPGVSRYVTQKNRHNTPSRLELKKFCRYCNKHTIHVEVKK 68          
BLAST of DR405590 vs. ExPASy Swiss-Prot
Match: RK33_HORVU (50S ribosomal protein L33, chloroplastic OS=Hordeum vulgare GN=rpl33 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.169e-23
Identity = 50/66 (75.76%), Postives = 55/66 (83.33%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 686
            MAKGK+VR+RVILEC SCVR G N+ES GISRY TQKNRHNTP +LE +KFC YC KHT H EIKK
Sbjct:    1 MAKGKDVRIRVILECISCVRKGANEESTGISRYSTQKNRHNTPGQLEFKKFCRYCRKHTTHHEIKK 66          
BLAST of DR405590 vs. ExPASy Swiss-Prot
Match: RK33_CYCTA (50S ribosomal protein L33, chloroplastic OS=Cycas taitungensis GN=rpl33 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.169e-23
Identity = 48/66 (72.73%), Postives = 57/66 (86.36%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 686
            MAKG +VRV++ LECTSC R+ V+K+  G+SRYITQKNR NTP R EL+KFCPYCYKHT+HGEIKK
Sbjct:    1 MAKGGDVRVKITLECTSCTRDSVDKKYPGVSRYITQKNRRNTPIRSELKKFCPYCYKHTIHGEIKK 66          
BLAST of DR405590 vs. ExPASy Swiss-Prot
Match: RK33_CRYJA (50S ribosomal protein L33, chloroplastic OS=Cryptomeria japonica GN=rpl33 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.169e-23
Identity = 49/66 (74.24%), Postives = 56/66 (84.85%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 686
            MAKG  VRV + LECTSC ++ VNK+S GISRY T+KNR NTP RLEL+KFCPYCYKHT+HGEIKK
Sbjct:    1 MAKGGNVRVTITLECTSCTQDSVNKKSPGISRYTTRKNRRNTPLRLELKKFCPYCYKHTIHGEIKK 66          
BLAST of DR405590 vs. ExPASy Swiss-Prot
Match: RK33_AGRST (50S ribosomal protein L33, chloroplastic OS=Agrostis stolonifera GN=rpl33 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.169e-23
Identity = 50/66 (75.76%), Postives = 55/66 (83.33%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 686
            MAKGK+VR+RVILEC SCVR G N+ES GISRY TQKNRHNTP +LE +KFC YC KHT H EIKK
Sbjct:    1 MAKGKDVRIRVILECISCVRKGANEESTGISRYSTQKNRHNTPGQLEFKKFCRYCRKHTTHHEIKK 66          
BLAST of DR405590 vs. ExPASy Swiss-Prot
Match: RK33_CUSEX (50S ribosomal protein L33, plastid OS=Cuscuta exaltata GN=rpl33 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.994e-23
Identity = 52/67 (77.61%), Postives = 57/67 (85.07%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGV--NKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAK K+VRV VILECTSC +N V  NK + GISRYITQKNRHNTP+RLE +KFCP CYKHTLHGEIK
Sbjct:    1 MAKNKDVRVTVILECTSCAQNDVHGNKVATGISRYITQKNRHNTPNRLEFQKFCPRCYKHTLHGEIK 67          
BLAST of DR405590 vs. ExPASy Swiss-Prot
Match: RK33_CUSGR (50S ribosomal protein L33, plastid OS=Cuscuta gronovii GN=rpl33 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.605e-23
Identity = 48/66 (72.73%), Postives = 56/66 (84.85%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKK 686
            M K K VR ++ILECT CVRN  N+ S+G+SRYITQKNRHNTP+RLEL+KFCP CYKH +HGEIKK
Sbjct:    1 MEKKKGVRGKIILECTGCVRNSHNRVSKGVSRYITQKNRHNTPNRLELKKFCPRCYKHIIHGEIKK 66          
The following BLAST results are available for this feature:
BLAST of DR405590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
RK33_WHEAT1.169e-2375.7650S ribosomal protein L33, chloroplastic OS=Tritic... [more]
RK33_SOYBN1.169e-2377.2750S ribosomal protein L33, chloroplastic OS=Glycin... [more]
RK33_LOLPR1.169e-2375.7650S ribosomal protein L33, chloroplastic OS=Lolium... [more]
RK33_LEMMI1.169e-2376.4750S ribosomal protein L33, chloroplastic OS=Lemna ... [more]
RK33_HORVU1.169e-2375.7650S ribosomal protein L33, chloroplastic OS=Hordeu... [more]
RK33_CYCTA1.169e-2372.7350S ribosomal protein L33, chloroplastic OS=Cycas ... [more]
RK33_CRYJA1.169e-2374.2450S ribosomal protein L33, chloroplastic OS=Crypto... [more]
RK33_AGRST1.169e-2375.7650S ribosomal protein L33, chloroplastic OS=Agrost... [more]
RK33_CUSEX1.994e-2377.6150S ribosomal protein L33, plastid OS=Cuscuta exal... [more]
RK33_CUSGR2.605e-2372.7350S ribosomal protein L33, plastid OS=Cuscuta gron... [more]

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Properties
Property NameValue
Genbank descriptionCSAD-PNP1242O20 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone CSAD-PNP1242O20 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405590 ID=DR405590; Name=DR405590; organism=Citrus sinensis; type=EST; length=718bp
GGGGGAACGGGGTGAAGAAGATTAGAGCTAGAATCAAATATTTGTGACTA
ATCTCTCTTTCCCCTCTTTTCGTTTTTTTGTTTTACAATTAGAAAGAAGG
AAAGCGAAAGAAAAAAGGTGGCTTCAACCTCAGCGAAACCCGGGTTCAGG
CTCCGATTAAATTAATTATTAATTATCCAGTTAAAAGCAAATAGACAGGT
AAAAGAAAACGGAAATCGAAATATGGCTAGGGTAAGAGTATCCTCCACTA
CAAGATCCTTAAATGAAATACTGGACTGCGATTTAGCAATATAGTTAGAA
ATTCTTGTATTACTTATTATTTTTTATTTTGATTTCCTATTTATTTACTA
TATTGATTGCAATAAAATCTTTATTTCATAAGTTTTTTTTGAGTGGTTAG
CAACTTCTATTTTTTTGTCCCGTGCTTCTTATTCGTTGCGGGTCGGAAAA
TAGAAAAGTTGGGTGAATCAAAAACCCCAAGGAGGTTCATGGCCAAGGGT
AAAGAGGTCCGAGTAAGGGTTATTTTGGAATGTACTAGTTGTGTTCGAAA
CGGTGTTAATAAGGAATCAAGGGGTATTTCCAGATATATTACTCAAAAGA
ATCGACACAATACACCCAGTCGATTGGAATTGAGAAAATTCTGTCCCTAT
TGTTACAAGCATACACTTCATGGGGAGATAAAAAAATAGATAGAGTCAAG
CCGCGTGCTTTTGTGTCA
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