EY728858

Overview
NameEY728858
Unique NameEY728858
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length533
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728858 vs. ExPASy Swiss-Prot
Match: FLBD_CAUCR (Transcriptional regulatory protein flbD OS=Caulobacter crescentus GN=flbD PE=4 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.787e-13
Identity = 57/175 (32.57%), Postives = 91/175 (52.00%), Query Frame = -3
Query:   61 ERVEDGSFREDLYYRLNGLEIALPPLRER-SDKSQLLDFLL---AEETGDQPVLLDSPARQALLAFAWPGNVRQL-----RTVLRTLAALCDDGRIGLED----LPA---VIRQARPQPAVVEDRS--DSPLDDAERLALLNALEQQRWHMSHTAEQLGVSRNTLYRKLRKHGIA 531
            + V+DG+FREDL YRLN + + LPPLRER +D   L +F +   +   G +   + + A++ L+A  WPGNVR+L     R VL +     ++  I L D     PA    + +     A    R+   S + + E+  +++ LE    + +H A  LG+S  TL  KL+++  A
Sbjct:  266 QAVKDGTFREDLLYRLNVVNLRLPPLRERPADVISLCEFFVKKYSAANGIEEKPISAEAKRRLIAHRWPGNVRELENAMHRAVLLSAGPEIEEFAIRLPDGQPMAPAPDVAVARGAQMAADAASRAFVGSTVAEVEQQLIIDTLEHCLGNRTHAANILGISIRTLRNKLKEYSDA 440          
BLAST of EY728858 vs. ExPASy Swiss-Prot
Match: NTRX_AZOC5 (Nitrogen assimilation regulatory protein ntrX OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=ntrX PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.981e-13
Identity = 59/170 (34.71%), Postives = 84/170 (49.41%), Query Frame = -3
Query:   64 ERVEDGSFREDLYYRLNGLEIALPPLRE-RSDKSQLLDF---LLAEETGDQPVLLDSPARQALLAFAWPGNVRQLRTVLRTLAALC---DDGRIGLEDLP---AVIRQARPQPAVVEDRSDSPLDDA----ERLALLNALEQQRWHMSHTAEQLGVSRNTLYRKLRKHGI 531
            E +  G FREDLY+RL+ + I +PPL E R D   L+DF   L+++ TG Q   +   A   L +  WPGNVRQLR  +  L  L     D  +    LP     +    P     E     PL +A    ER  L   + +   ++S TAE +G+ R+ L+RKL+  G+
Sbjct:  284 EEIAAGRFREDLYHRLSVVPIRVPPLAERREDIPDLVDFFIDLISQTTGLQRRKVGEDAMAVLQSHDWPGNVRQLRNNVERLLILAGGDPDAEVTASMLPPDVGALVPTLPNGNGGEHLMGLPLREAREVFEREYLAAQINRFGGNISRTAEFVGMERSALHRKLKALGV 453          
BLAST of EY728858 vs. ExPASy Swiss-Prot
Match: HOXA_BRAJA (Hydrogenase transcriptional regulatory protein hoxA OS=Bradyrhizobium japonicum GN=hoxA PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 5.199e-13
Identity = 56/175 (32.00%), Postives = 87/175 (49.71%), Query Frame = -3
Query:   37 VEDGSFREDLYYRLNGLEIALPPLRER-SDKSQLLDFLLA--EETGDQPVLLDSPARQALLAFA---WPGNVRQLRTVLRTLAALCDDGRIGLEDLPAVIRQARPQPAVVEDRSD------SPLDDAERLALLNALEQQRWHMSHTAEQLGVSRNTLYRKLRKHGIAR*LKGAIF 525
            VE G FR DLYYRL    + +P LRER  D   + + +L+  + + ++P L    AR AL  F    WPGNVR+L+  ++ +A L D   +    L       R  P     R +        ++D E+  ++N LE+   ++S  A +LG+SR  L  KL ++ + +  KG  F
Sbjct:  312 VEAGRFRRDLYYRLAAFPVHMPALRERPMDIPLIAEGVLSAVKSSFNRPNL--RFARSALEEFGKYHWPGNVRELQNEIQRMAVLADRDELAAPPLLGRRNGKRSAPLPAHGRLNGSASLKDKVEDLEKSVIMNCLERNDGNISRVASELGLSRVGLRNKLSRYDLRKNAKGDAF 484          
BLAST of EY728858 vs. ExPASy Swiss-Prot
Match: TYRR_ECOLI (Transcriptional regulatory protein tyrR OS=Escherichia coli (strain K12) GN=tyrR PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 6.791e-13
Identity = 54/165 (32.73%), Postives = 80/165 (48.48%), Query Frame = -3
Query:   58 ERVEDGSFREDLYYRLNGLEIALPPLRERSDK----SQLLDFLLAEETGDQPVLLDSPARQALLAFAWPGNVRQLRTVLRTLAALCDDGRIGLEDLPAVIRQARPQPAVVEDRSDSPLDDAE---RLALLNALEQQRWHMSHTAEQLGVSRNTLYRKLRKHGIAR 531
            E V+ G FREDLYYRLN L + LPPLR+        ++L     A+E G     L +     L  +AWPGNVRQL+  +       D   +  +D+      A    AV ED  +  LD+       ++L  L +        A++LGVS   +  KLR++G+++
Sbjct:  345 ELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDA-ATVAVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQ 508          
BLAST of EY728858 vs. ExPASy Swiss-Prot
Match: NTRC_BRASR (Nitrogen assimilation regulatory protein OS=Bradyrhizobium sp. (strain RP501 Parasponia) GN=ntrC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.869e-13
Identity = 59/182 (32.42%), Postives = 84/182 (46.15%), Query Frame = -3
Query:   76 VEDGSFREDLYYRLNGLEIALPPLRER-SDKSQLLD--FLLAEETGDQPVLLDSPARQALLAFAWPGNVRQLRTVLRTLAALCD---------DGR-------------IGLEDLPAVIR-------QARPQPAVVEDRSDSPLDDAERLALLNALEQQRWHMSHTAEQLGVSRNTLYRKLR 525
            ++ G FREDL++RLN + + +PPLRER  D   L+   F LAE+ G  P  LD+ A + L    WPGNVR+L  + R LAAL           DG              +G+++L   +           P            L + E   L  AL   R +    A+ LG++RNTL +K+R
Sbjct:  288 IQQGLFREDLFFRLNVVPLRVPPLRERIEDLPDLIRHFFSLAEKDGLPPKKLDAQALERLKQHRWPGNVRELENLARRLAALYPQDVITASVIDGELAPPAVTSGSTATVGVDNLGGAVEAYLSSHFSGFPNGVPPPGLYHRILKEIEIPLLTAALAATRGNQIRAADLLGLNRNTLRKKIR 469          
BLAST of EY728858 vs. ExPASy Swiss-Prot
Match: TYRR_ENTAG (Transcriptional regulatory protein tyrR OS=Enterobacter agglomerans GN=tyrR PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.158e-12
Identity = 53/165 (32.12%), Postives = 81/165 (49.09%), Query Frame = -3
Query:   58 ERVEDGSFREDLYYRLNGLEIALPPLRER-SDKSQLLDFLL---AEETGDQPVLLDSPARQALLAFAWPGNVRQLRTVLRTLAALCDDGRIGLEDLPAVIRQARPQPAVVEDRSDSPLDDAE---RLALLNALEQQRWHMSHTAEQLGVSRNTLYRKLRKHGIAR 531
            E V+ G FREDL+YRLN L + LPPLRER  D   L +  +   A+E G     L S     L+ + WPGNVRQL+  L       +   +  +D+  V+ +     ++ E+  +  LD        ++L  L          A++LGVS   +  KLR++G+ +
Sbjct:  353 ELVQRGEFREDLFYRLNVLTLNLPPLRERVQDIMPLTEIFVARFADEQGIPRPRLSSQLNAFLMRYNWPGNVRQLKNALYRALTQLEGHELRPQDI--VLPEQALDVSLGEEAMEGTLDQITSRFERSILTRLYLSYPSTRKLAKRLGVSHTAIANKLREYGLGQ 515          
BLAST of EY728858 vs. ExPASy Swiss-Prot
Match: HRPR_PSESY (Pathogenicity locus probable regulatory protein hrpR OS=Pseudomonas syringae pv. syringae GN=hrpR PE=4 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.513e-12
Identity = 55/168 (32.74%), Postives = 85/168 (50.60%), Query Frame = -3
Query:   61 ERVEDGSFREDLYYRLNGLEIALPPLRERSDKSQLLDFL------LAEETGDQPVLLDSPARQALLAFAWPGNVRQLRTVLRTLAALCDDGRIGLEDLPAV-----IRQARPQPAVVEDRSDSPLDDAERLALLNALEQQRWHMSHTAEQLGVSRNTLYRKLRKHGIA 531
            E VE G FR DL++RLN L + LP LR+R  + Q+L         +A E G     LD+   Q LL+  WPGNVR+L++      A+C   RI +    AV     +   R Q  V+           E++ + +AL++ R +     E+L + R TLY ++++ G+A
Sbjct:  156 ELVEQGLFRRDLFFRLNVLTLQLPALRKR--REQILPLFDQFTQDIAAECGRSAPTLDNGRVQILLSHDWPGNVRELKSAAN---AICP--RIAVAGRRAVEARDPVTGLRMQMRVI-----------EKMLIQDALKRHRHNFDAVLEELELPRRTLYHRMKELGVA 305          
BLAST of EY728858 vs. ExPASy Swiss-Prot
Match: TYRR_SALTY (Transcriptional regulatory protein tyrR OS=Salmonella typhimurium GN=tyrR PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.976e-12
Identity = 53/165 (32.12%), Postives = 79/165 (47.88%), Query Frame = -3
Query:   58 ERVEDGSFREDLYYRLNGLEIALPPLRERSDK----SQLLDFLLAEETGDQPVLLDSPARQALLAFAWPGNVRQLRTVLRTLAALCDDGRIGLEDLPAVIRQARPQPAVVEDRSDSPLDDAE---RLALLNALEQQRWHMSHTAEQLGVSRNTLYRKLRKHGIAR 531
            E V+ G FREDLYYRLN L + LPPLR+        ++L     A+E G     L +     L  + WPGNVRQL+  +       +   +  +D+      A    AV ED  +  LDD       ++L  L +        A++LGVS   +  KLR++G+++
Sbjct:  345 ELVQKGLFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLSADLSTVLTRYGWPGNVRQLKNAIYRALTQLEGYELRPQDILLPDYDA-ATVAVGEDAMEGSLDDITSRFERSVLTQLYRSYPSTRKLAKRLGVSHTAIANKLREYGLSQ 508          
BLAST of EY728858 vs. ExPASy Swiss-Prot
Match: TYRR_SALTI (Transcriptional regulatory protein tyrR OS=Salmonella typhi GN=tyrR PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.976e-12
Identity = 53/165 (32.12%), Postives = 79/165 (47.88%), Query Frame = -3
Query:   58 ERVEDGSFREDLYYRLNGLEIALPPLRERSDK----SQLLDFLLAEETGDQPVLLDSPARQALLAFAWPGNVRQLRTVLRTLAALCDDGRIGLEDLPAVIRQARPQPAVVEDRSDSPLDDAE---RLALLNALEQQRWHMSHTAEQLGVSRNTLYRKLRKHGIAR 531
            E V+ G FREDLYYRLN L + LPPLR+        ++L     A+E G     L +     L  + WPGNVRQL+  +       +   +  +D+      A    AV ED  +  LDD       ++L  L +        A++LGVS   +  KLR++G+++
Sbjct:  345 ELVQKGLFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLSADLSTVLTRYGWPGNVRQLKNAIYRALTQLEGYELRPQDILLPDYDA-ATVAVGEDAMEGSLDDITSRFERSVLTQLYRSYPSTRKLAKRLGVSHTAIANKLREYGLSQ 508          
BLAST of EY728858 vs. ExPASy Swiss-Prot
Match: PRPR_SALTY (Propionate catabolism operon regulatory protein OS=Salmonella typhimurium GN=prpR PE=4 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.976e-12
Identity = 49/160 (30.63%), Postives = 80/160 (50.00%), Query Frame = -3
Query:   76 VEDGSFREDLYYRLNGLEIALPPLRER-SDKSQLLDFLLAEETGDQPVLLDSPARQA-------LLAFAWPGNVRQLRTVLRTLAALCDDGRIGLEDLPAVIRQARPQ--PAVVEDRSDSPLDDAERLALLNALEQQRWHMSHTAEQLGVSRNTLYRKLR 525
            +  G FR DL+YRL+ L + LPPLRER +D   L +  L +      +      R         LLA+ WPGN+R+LR ++  LA       + ++  P + RQ   Q  P ++ + ++      +  AL + L + +   +  A  LG+SR TL+R+L+
Sbjct:  378 IMQGRFRPDLFYRLSILRLTLPPLRERQADILPLAESFLKQSLAAMEIPFTESIRHGLTQCQPLLLAWRWPGNIRELRNMMERLALF-----LSVDPAPTLDRQFMRQLLPELMVNTAELTPSTVDANALQDVLARFKGDKTAAARYLGISRTTLWRRLK 532          
The following BLAST results are available for this feature:
BLAST of EY728858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
FLBD_CAUCR1.787e-1332.57Transcriptional regulatory protein flbD OS=Cauloba... [more]
NTRX_AZOC53.981e-1334.71Nitrogen assimilation regulatory protein ntrX OS=A... [more]
HOXA_BRAJA5.199e-1332.00Hydrogenase transcriptional regulatory protein hox... [more]
TYRR_ECOLI6.791e-1332.73Transcriptional regulatory protein tyrR OS=Escheri... [more]
NTRC_BRASR8.869e-1332.42Nitrogen assimilation regulatory protein OS=Bradyr... [more]
TYRR_ENTAG1.158e-1232.12Transcriptional regulatory protein tyrR OS=Enterob... [more]
HRPR_PSESY1.513e-1232.74Pathogenicity locus probable regulatory protein hr... [more]
TYRR_SALTY1.976e-1232.12Transcriptional regulatory protein tyrR OS=Salmone... [more]
TYRR_SALTI1.976e-1232.12Transcriptional regulatory protein tyrR OS=Salmone... [more]
PRPR_SALTY1.976e-1230.63Propionate catabolism operon regulatory protein OS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-009-E07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728858 ID=EY728858; Name=EY728858; organism=Citrus sinensis; type=EST; length=533bp
CTCGTAAAACATCGAGGCAGGTTAGCGTAGGGTGGGAAAAATCGCACCCT
TTAGCTAACGGGCGATCCCGTGTTTGCGCAGTTTTCTATACAAGGTGTTA
CGGCTAACCCCCAGTTGCTCCGCCGTGTGGCTCATGTGCCAGCGCTGTTG
CTCCAAGGCATTGAGCAGCGCCAGGCGCTCTGCATCGTCCAAGGGCGAAT
CCGAACGGTCCTCCACTACTGCCGGCTGCGGGCGCGCCTGGCGAATGACC
GCCGGCAGGTCCTCGAGCCCAATCCGTCCGTCGTCACACAATGCCGCCAA
CGTGCGCAGCACCGTGCGCAACTGCCGTACATTGCCCGGCCAGGCAAATG
CCAACAGTGCCTGACGCGCAGGGCTGTCGAGCAACACCGGCTGGTCGCCC
GTCTCCTCAGCCAATAGAAAGTCGAGCAGTTGCGACTTATCGCTGCGCTC
ACGCAACGGCGGCAGGGCGATTTCCAGACCGTTCAGCCGGTAGTACAGGT
CTTCGCGAAAACTGCCGTCCTCTACCCGCTCCA
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