EY728858

Overview
NameEY728858
Unique NameEY728858
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length533
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728858 vs. ExPASy Swiss-Prot
Match: DHAR_CITFR (Glycerol metabolism operon regulatory protein OS=Citrobacter freundii GN=dhaR PE=4 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.976e-12
Identity = 44/159 (27.67%), Postives = 77/159 (48.43%), Query Frame = -3
Query:   64 VEDGSFREDLYYRLNGLEIALPPLRERSDKSQLLDFLLA---EETGDQPVLLDSPARQALLAFAWPGNVRQLRTVLRTLAALCDDGRIGLEDLPAVIRQARPQPAVVEDRSDSPL--DDAERLALLNALEQQRWHMSHTAEQLGVSRNTLYRKLRKHGI 525
            VE   F   LYY L+  EI +PPLR R +    L +      ++     + +D  A   L+A++WPGN  +L +++  +A   D+G I L +LP  +   RP          + L     E+ A+++A       +   ++ L + R TL+RK++++ I
Sbjct:  472 VEQNRFSRQLYYALHSFEIVIPPLRARRNSIPSLIYTRLNSLKKRFSSSLKIDDDALAQLVAYSWPGNDFELNSIIENIAISSDNGHIRLSNLPDYLFAERPGLETASSLLPASLTFTAIEKEAIIHAARVTSGRVQEMSQLLNIGRTTLWRKMKQYDI 630          
BLAST of EY728858 vs. ExPASy Swiss-Prot
Match: Y4PA_RHISN (Putative transcriptional regulatory protein y4pA OS=Rhizobium sp. (strain NGR234) GN=NGR_a02110 PE=4 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.580e-12
Identity = 49/146 (33.56%), Postives = 74/146 (50.68%), Query Frame = -3
Query:   64 RLNGLEIALPPLRERSDKSQLL--DFL--LAEETGDQPVLLDSPARQALLAFAWPGNVRQLRTVLRTLAALCDDGRIGLEDLPAVIRQARPQPAVVEDRSDSPLDDAERLALLNALEQQRWHMSHTAEQLGVSRNTLYRKLRKHGI 489
            RL    + LPPL +R +   LL   FL  L ++   + + +D  A + L+ + WP N+R+LR+VL T A  C+   I  E LP +       P         P    ER  +L+AL++ R+     A  LG+SR TLY K+R +G+
Sbjct:  464 RLAPGHVFLPPLCDRLEDLPLLAEHFLQALRKDRRSRKLSVDHSAYRVLMTYGWPENIRELRSVLETAAIRCEGDWIKSEHLPPLGDANADAP--------HPHPGEEREWILDALQRHRFRRGEAARYLGISRKTLYNKMRVYGL 601          
BLAST of EY728858 vs. ExPASy Swiss-Prot
Match: FHLA_SALTY (Formate hydrogenlyase transcriptional activator OS=Salmonella typhimurium GN=fhlA PE=4 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 2.580e-12
Identity = 54/161 (33.54%), Postives = 79/161 (49.07%), Query Frame = -3
Query:   64 VEDGSFREDLYYRLNGLEIALPPLRERSDKSQLL----DFLLAEETGDQPVLLDSPARQALLAFAWPGNVRQLRTVLRTLAALCDDGRIGLEDLPAVIRQARPQPAVVEDRSDSPLDDAERLALLNALEQQRWHMS---HTAEQLGVSRNTLYRKLRKHGI 525
            V D  FR DLYYRLN   I LPPLRER +   LL     F +A   G     + +   + L +  WPGNVR+L  V+   A L   G +    LP  I    P  + V   SD   +D  +L ++  L++    ++     A++LG+ R TL  ++++ GI
Sbjct:  529 VADREFRNDLYYRLNVFPIQLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSSMEWPGNVRELENVVER-AVLLTRGNVLQLSLPD-ITAVTPDTSPVATESDKEGEDEYQL-IIRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGI 686          
BLAST of EY728858 vs. ExPASy Swiss-Prot
Match: YGEV_ECOLI (Uncharacterized sigma-54-dependent transcriptional regulator ygeV OS=Escherichia coli (strain K12) GN=ygeV PE=4 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.673e-11
Identity = 48/168 (28.57%), Postives = 79/168 (47.02%), Query Frame = -3
Query:   70 VEDGSFREDLYYRLNGLEIALPPLRERSDKSQLLD----FLLAEETGDQPVLLDSPARQALLAFAWPGNVRQLRTVLRTLAALCDDGRIGLEDL--PAVIRQARPQPAVV----------EDRSDSPLDDAERLALLNALEQQRWHMSHTAEQLGVSRNTLYRKLRKH 525
            + +G FREDL+YRLN + I LPPLRER +  +LL      L     G     +     + L    WPGN+R+L  ++  L  +   G +    L  P ++     + + V          +D   + L++ E+  +  AL +        A++LG+   TLYRK++K+
Sbjct:  421 IAEGKFREDLFYRLNVIPITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHN-SKKQVADELGIGIATLYRKIKKY 587          
BLAST of EY728858 vs. ExPASy Swiss-Prot
Match: NORR_ENT38 (Anaerobic nitric oxide reductase transcription regulator norR OS=Enterobacter sp. (strain 638) GN=norR PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.853e-11
Identity = 51/173 (29.48%), Postives = 79/173 (45.66%), Query Frame = -3
Query:   64 ERVEDGSFREDLYYRLNGLEIALPPLRERSDKSQLLDFLLAEE----TGDQPVLLDSPARQALLAFAWPGNVRQLRTVLRTLAALCDDGRIG-------------LEDLPAVIRQARPQPAVVEDRSDSPLDDAERLALLNALEQQRWHMSHTAEQLGVSRNTLYRKLRKHGI 531
            E V  G+FR DL++RL+   +++PPLRER +   LL     E+     G   V+L   AR  LL++ WPGNVR+L   +     L    R+G              E  PAV   A+  PA+  +      +  +R  +  AL+Q     +  A  L +    L+R  ++ G+
Sbjct:  333 EEVLAGNFRADLFHRLSVFPLSVPPLRERGEDVVLLAGFFCEQCRLKMGLSRVVLSPGARSHLLSYGWPGNVRELEHAIHRAVVLARAARLGDDVVIHARHFALHDEAAPAV---AQELPAIANENLREATEAFQRQMITRALDQNGRSWAACARALEMDVANLHRLAKRLGL 502          
BLAST of EY728858 vs. ExPASy Swiss-Prot
Match: YFHA_ECOLI (Uncharacterized protein yfhA OS=Escherichia coli (strain K12) GN=yfhA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.726e-11
Identity = 50/158 (31.65%), Postives = 77/158 (48.73%), Query Frame = -3
Query:   70 GSFREDLYYRLNGLEIALPPLRERSDKSQLLDFLLAEETGD--QPVL--LDSPARQALLAFAWPGNVRQLRTVLRTLAALCDDGRIGLEDLPAVIRQA-----RPQPAVVEDRSDSPLDDAERLALLNALEQQRWHMSHTAEQLGVSRNTLYRKLRKH 516
            G FREDLYYRLN + + +P L ER++   LL   L  +  +  +P +    + A + L+  +WPGNVRQL  V+    AL     I      A++ QA        P  VE R+   L+   +L     L+  + +++H A   G +R   Y+ L +H
Sbjct:  287 GEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSPVIS----DALVEQALEGENTALPTFVEARNQFELNYLRKL-----LQITKGNVTHAARMAGRNRTEFYKLLSRH 435          
BLAST of EY728858 vs. ExPASy Swiss-Prot
Match: YFHA_ECO57 (Uncharacterized protein yfhA OS=Escherichia coli O157:H7 GN=yfhA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.726e-11
Identity = 50/158 (31.65%), Postives = 77/158 (48.73%), Query Frame = -3
Query:   70 GSFREDLYYRLNGLEIALPPLRERSDKSQLLDFLLAEETGD--QPVL--LDSPARQALLAFAWPGNVRQLRTVLRTLAALCDDGRIGLEDLPAVIRQA-----RPQPAVVEDRSDSPLDDAERLALLNALEQQRWHMSHTAEQLGVSRNTLYRKLRKH 516
            G FREDLYYRLN + + +P L ER++   LL   L  +  +  +P +    + A + L+  +WPGNVRQL  V+    AL     I      A++ QA        P  VE R+   L+   +L     L+  + +++H A   G +R   Y+ L +H
Sbjct:  287 GEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSPVIS----DALVEQALEGENTALPTFVEARNQFELNYLRKL-----LQITKGNVTHAARMAGRNRTEFYKLLSRH 435          
BLAST of EY728858 vs. ExPASy Swiss-Prot
Match: TYRR_CITBR (Transcriptional regulatory protein tyrR OS=Citrobacter braakii GN=tyrR PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.301e-11
Identity = 51/165 (30.91%), Postives = 80/165 (48.48%), Query Frame = -3
Query:   58 ERVEDGSFREDLYYRLNGLEIALPPLRE-RSDKSQLLDFLLAEETGDQPV---LLDSPARQALLAFAWPGNVRQLRTVLRTLAALCDDGRIGLEDLPAVIRQARPQPAVVEDRSDSPLDDAERLALLNALEQQRWHMSHT---AEQLGVSRNTLYRKLRKHGIAR 531
            E V+ G FREDLYYRLN L + LPPLR+  +D   L +  +A    +Q V    L +     L  + WPGNVR ++  +       +   +  +D+      A    AV E+  +  LD+       + L Q   +   T   A++LGVS   +  KLR++G+++
Sbjct:  345 EMVQKGLFREDLYYRLNVLTLNLPPLRDLPADIMPLTELFVARFADEQGVPRPKLSADLSTVLTRYGWPGNVRHVKNAIYRALTQLEGYELRPQDILLPDYDA-ATVAVGEEVMEGSLDEITSRFERSVLTQLYMNYPSTRKLAKRLGVSHTAIANKLREYGLSQ 508          
The following BLAST results are available for this feature:
BLAST of EY728858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
DHAR_CITFR1.976e-1227.67Glycerol metabolism operon regulatory protein OS=C... [more]
Y4PA_RHISN2.580e-1233.56Putative transcriptional regulatory protein y4pA O... [more]
FHLA_SALTY2.580e-1233.54Formate hydrogenlyase transcriptional activator OS... [more]
YGEV_ECOLI1.673e-1128.57Uncharacterized sigma-54-dependent transcriptional... [more]
NORR_ENT382.853e-1129.48Anaerobic nitric oxide reductase transcription reg... [more]
YFHA_ECOLI3.726e-1131.65Uncharacterized protein yfhA OS=Escherichia coli (... [more]
YFHA_ECO573.726e-1131.65Uncharacterized protein yfhA OS=Escherichia coli O... [more]
TYRR_CITBR8.301e-1130.91Transcriptional regulatory protein tyrR OS=Citroba... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-009-E07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728858 ID=EY728858; Name=EY728858; organism=Citrus sinensis; type=EST; length=533bp
CTCGTAAAACATCGAGGCAGGTTAGCGTAGGGTGGGAAAAATCGCACCCT
TTAGCTAACGGGCGATCCCGTGTTTGCGCAGTTTTCTATACAAGGTGTTA
CGGCTAACCCCCAGTTGCTCCGCCGTGTGGCTCATGTGCCAGCGCTGTTG
CTCCAAGGCATTGAGCAGCGCCAGGCGCTCTGCATCGTCCAAGGGCGAAT
CCGAACGGTCCTCCACTACTGCCGGCTGCGGGCGCGCCTGGCGAATGACC
GCCGGCAGGTCCTCGAGCCCAATCCGTCCGTCGTCACACAATGCCGCCAA
CGTGCGCAGCACCGTGCGCAACTGCCGTACATTGCCCGGCCAGGCAAATG
CCAACAGTGCCTGACGCGCAGGGCTGTCGAGCAACACCGGCTGGTCGCCC
GTCTCCTCAGCCAATAGAAAGTCGAGCAGTTGCGACTTATCGCTGCGCTC
ACGCAACGGCGGCAGGGCGATTTCCAGACCGTTCAGCCGGTAGTACAGGT
CTTCGCGAAAACTGCCGTCCTCTACCCGCTCCA
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