EY728851

Overview
NameEY728851
Unique NameEY728851
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728851 vs. ExPASy Swiss-Prot
Match: MEF2A_XENLA (Myocyte-specific enhancer factor 2A homolog OS=Xenopus laevis GN=mef2a PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.464e-15
Identity = 40/74 (54.05%), Postives = 58/74 (78.38%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCN 237
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of EY728851 vs. ExPASy Swiss-Prot
Match: MEF2A_PONAB (Myocyte-specific enhancer factor 2A OS=Pongo abelii GN=MEF2A PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.464e-15
Identity = 40/74 (54.05%), Postives = 58/74 (78.38%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCN 237
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of EY728851 vs. ExPASy Swiss-Prot
Match: MEF2A_MOUSE (Myocyte-specific enhancer factor 2A OS=Mus musculus GN=Mef2a PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.464e-15
Identity = 40/74 (54.05%), Postives = 58/74 (78.38%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCN 237
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of EY728851 vs. ExPASy Swiss-Prot
Match: MEF2A_CHICK (Myocyte-specific enhancer factor 2A OS=Gallus gallus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.464e-15
Identity = 40/74 (54.05%), Postives = 58/74 (78.38%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCN 237
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of EY728851 vs. ExPASy Swiss-Prot
Match: MEF2B_HUMAN (Myocyte-specific enhancer factor 2B OS=Homo sapiens GN=MEF2B PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.076e-14
Identity = 41/89 (46.07%), Postives = 64/89 (71.91%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALE 282
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  +L+++ +S+ M + L +Y +  Y  P  + +  + LE
Sbjct:    1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQY-ASTDMDRVLLKYTE--YSEPHESRTNTDILE 86          
BLAST of EY728851 vs. ExPASy Swiss-Prot
Match: MEF2B_MOUSE (Myocyte-specific enhancer factor 2B OS=Mus musculus GN=Mef2b PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.890e-14
Identity = 40/89 (44.94%), Postives = 64/89 (71.91%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALE 282
            MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD ++ALIIF++  +L+++ +SS M + L +Y +  Y  P  + +  + L+
Sbjct:    1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCDIALIIFNSAQRLFQY-ASSDMDRVLLKYTE--YSEPHESRTNADILQ 86          
BLAST of EY728851 vs. ExPASy Swiss-Prot
Match: AP32_ASAEU (MADS-box protein AeAP3-2 (Fragment) OS=Asarum europaeum GN=AP3-2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.329e-12
Identity = 51/152 (33.55%), Postives = 82/152 (53.95%), Query Frame = 1
Query:   94 GLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS-SMLKTLERYQKCNYGAPEPNVSAREALELSSQQEY---LKLXARYEALQRSQGISLGEELGPLNSKELESLERQLDMFLKPIRSTELSTCWITLLNWAHRDSC*AKQIRPSTRVME 537
            GLLKKA EL++LCDA++ +IIFS+ GK++EF S   SM + ++RYQK         +S   A    +QQ Y    ++    + LQ +     GE+L  L   E+  LE+QL++ +  +RS +       L N   +++   +Q R   RV++
Sbjct:    2 GLLKKARELAILCDAQLGVIIFSSSGKMFEFSSPPISMREIIDRYQK---------LSGNCAPVYDNQQVYCEITRMKNEIDKLQATMRHFAGEDLTSLTMNEMLQLEQQLEISVNKVRSRKEQLLQQQLDNLRRKENMLEEQNRELYRVIQ 144          
The following BLAST results are available for this feature:
BLAST of EY728851 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
MEF2A_XENLA5.464e-1554.05Myocyte-specific enhancer factor 2A homolog OS=Xen... [more]
MEF2A_PONAB5.464e-1554.05Myocyte-specific enhancer factor 2A OS=Pongo abeli... [more]
MEF2A_MOUSE5.464e-1554.05Myocyte-specific enhancer factor 2A OS=Mus musculu... [more]
MEF2A_CHICK5.464e-1554.05Myocyte-specific enhancer factor 2A OS=Gallus gall... [more]
MEF2B_HUMAN2.076e-1446.07Myocyte-specific enhancer factor 2B OS=Homo sapien... [more]
MEF2B_MOUSE7.890e-1444.94Myocyte-specific enhancer factor 2B OS=Mus musculu... [more]
AP32_ASAEU4.329e-1233.55MADS-box protein AeAP3-2 (Fragment) OS=Asarum euro... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-009-D10-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728851 ID=EY728851; Name=EY728851; organism=Citrus sinensis; type=EST; length=689bp
CCACGCGTCCGGAAAATGGGAAGGGGTAGGGTTGAGTTGAAGAGGATAGA
GAACAAGATCAACAGGCAAGTGACCTTTGCAAAGAGAAGAAATGGCCTAT
TGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTC
ATCATTTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAG
CATGCTCAAAACGCTTGAGAGGTACCAGAAGTGCAACTATGGAGCACCAG
AACCGAATGTGTCCGCAAGGGAGGCCCTGGAGCTAAGTAGCCAGCAAGAA
TATCTGAAGCTTANAGCACGATATGAAGCCCTACAGAGATCCCAAGGAAT
CTCCTTGGGAGAAGAACTTGGCCCTCTAAACAGCAAAGAGCTTGAGTCAC
TTGAAAGGCAGCTTGATATGTTCTTGAAGCCGATCAGATCAACAGAACTC
AGTACATGCTGGATTACCTTACTGAACTGGGCACATAGGGACAGTTGCTG
AGCGAAGCAAATTAGACCCTCAACAAGGGTGATGGAAGGGATATCAATGA
ACACACTTCATTGAATCTTATGCAAAGATATGTGGTATTGGCTTATAACA
ACTCAACTCCAGGCGATACTTCCTTTTCGCCTTGGAATGTGACCCCACTT
GCAATTGGATATCCCCTTGGGACCCATATCCGTGTCCAA
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