EY728851

Overview
NameEY728851
Unique NameEY728851
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728851 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSI (MADS-box transcription factor 56 OS=Oryza sativa subsp. indica GN=MADS56 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 5.628e-28
Identity = 76/147 (51.70%), Postives = 95/147 (64.63%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLXARYEALQRSQGISLGEELGPLNSKELESLERQLDMFLKPIR--STEL 450
            M RGR ELKRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVALI+FS RG+LYEF S+ S+ KT++RY+   Y     N    +      + + L L  + EAL  S+   LGE L   + +EL  LE +L+  L  IR   TEL
Sbjct:    1 MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKA--YTKDHVNNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGCSIEELRGLEMKLEKSLHNIRLKKTEL 145          
BLAST of EY728851 vs. ExPASy Swiss-Prot
Match: MAD20_ORYSJ (MADS-box transcription factor 20 OS=Oryza sativa subsp. japonica GN=MADS20 PE=2 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 2.793e-27
Identity = 66/144 (45.83%), Postives = 100/144 (69.44%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS-SSMLKTLERYQKCNYGAPEPNVSAR-EALELSSQQEYLKLXARYEALQRSQGISLGEELGPLNSKELESLERQLDMFLKPIRS 441
            MGRG+V+++RIEN+++RQVTF+KRR GLLKKA+E++VLCD +VA I+FS +G L+ + SS ++M + LE+Y +    +   NV      LE S   +++KL  R EAL++SQ   +G+EL  L  ++++ LE Q+D  L  IRS
Sbjct:    1 MGRGKVQVRRIENEVSRQVTFSKRRPGLLKKAHEIAVLCDVDVAAIVFSAKGNLFHYASSHTTMERILEKYDRHELLSEGNNVIEEFPELEGSMSYDHIKLRGRIEALKKSQRNLMGQELDSLTLQDIQQLENQIDTSLNNIRS 144          
BLAST of EY728851 vs. ExPASy Swiss-Prot
Match: AGL19_ARATH (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.061e-26
Identity = 74/142 (52.11%), Postives = 93/142 (65.49%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLXARYEALQRSQGISLGEELGPLNSKELESLERQLDMFLKPIRS 441
            M RG+ E+KRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVAL+IFS R KLYEF SSSS+  T+ERYQ+        N   R      ++ E   L  + E L+ S+   LGE +   + +EL+ LE QLD  L  IR+
Sbjct:    1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEF-SSSSIAATIERYQR--RIKEIGNNHKRNDNSQQARDETSGLTKKIEQLEISKRKLLGEGIDACSIEELQQLENQLDRSLSRIRA 139          
BLAST of EY728851 vs. ExPASy Swiss-Prot
Match: GGM13_GNEGN (MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.386e-26
Identity = 73/146 (50.00%), Postives = 92/146 (63.01%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS-SSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQ---EYLKLXARYEALQRSQGISLGEELGPLNSKELESLERQLDMFLKPIRS 441
            MGRG++E+KRIEN  NRQVTF+KRR GLLKKA+ELSVLCDAE+ LIIFS+ GKL+E+ S SSSM K +ERYQK         VS     E  +Q    E  ++    E LQ +    +GE+L  L   EL  L +QL+     +RS
Sbjct:    1 MGRGKIEIKRIENTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSSGKLFEYSSASSSMKKIIERYQK---------VSGARITEYDNQHLYCEMTRMKNENEKLQTNIRRMMGEDLTSLTMTELHHLGQQLESASSRVRS 137          
BLAST of EY728851 vs. ExPASy Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.811e-26
Identity = 70/145 (48.28%), Postives = 99/145 (68.28%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQ---EYLKLXARYEALQRSQGISLGEELGPLNSKELESLERQLDMFLKPIRS 441
            M RG+ ++KRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEV+LIIFS +GKLYEF +SS+M  T++RY +      +  VS +   E + Q    E   +  + E L+ S+   LGE +G  + +EL+ +E+QL+  +K IR+
Sbjct:    1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEF-ASSNMQDTIDRYLR----HTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCSIEELQQIEQQLEKSVKCIRA 140          
BLAST of EY728851 vs. ExPASy Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.088e-26
Identity = 67/143 (46.85%), Postives = 95/143 (66.43%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSS-QQEYLKLXARYEALQRSQGISLGEELGPLNSKELESLERQLDMFLKPIRS 441
            MGRG++ ++RI+N  +RQVTF+KRRNG+ KKA EL++LCDAEV L+IFS+ G+LYE+ SS+SM   ++RY K      E    A    EL   Q+E   L  +   LQ +    +GE+L  LN KEL+SLE QL++ L+ +R+
Sbjct:    1 MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEY-SSTSMKSVIDRYGK---SKDEQQAVANPNSELKFWQREAASLRQQLHNLQENHRQLMGEDLSGLNVKELQSLENQLEISLRSVRT 139          
BLAST of EY728851 vs. ExPASy Swiss-Prot
Match: MAD50_ORYSJ (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.880e-26
Identity = 74/144 (51.39%), Postives = 99/144 (68.75%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQ---KCNYGAPEPNVSAREALELSSQQEYLKLXARYEALQRSQGISLGEELGPLNSKELESLERQLDMFLKPIR 438
            M RG+ ++KRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVALI+FS RGKLYEF S+S+  KT+ERY+   K N G    N + ++ +E   + +   L  + EAL+  +   LGE+L   + +EL SLE +L+  L  IR
Sbjct:    1 MVRGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASASTQ-KTIERYRTYTKENIG----NKTVQQDIE-QVKADADGLAKKLEALETYKRKLLGEKLDECSIEELHSLEVKLERSLISIR 138          
BLAST of EY728851 vs. ExPASy Swiss-Prot
Match: AGL15_BRANA (Agamous-like MADS-box protein AGL15 OS=Brassica napus GN=AGL15 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.986e-26
Identity = 71/142 (50.00%), Postives = 94/142 (66.20%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAR-EALELSSQQEYLKLXARYEALQRSQGISLGEELGPLNSKELESLERQLDMFLKPIR 438
            MGRG++E+KRIEN  +RQVTF+KRR GLLKKA+ELSVLCDAEVA+I+FS  GKL+EF SS+SM KTL RY      +  P ++ + E  E  ++ + LK       LQ       G+ L  L+ KEL+ LE+QL+  L  +R
Sbjct:    1 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEF-SSTSMKKTLLRYGNYQISSDVPGINCKTENQEECTEVDLLK--DEISMLQEKHLHMQGKPLNLLSLKELQHLEKQLNFSLISVR 139          
BLAST of EY728851 vs. ExPASy Swiss-Prot
Match: AGL12_ARATH (Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana GN=AGL12 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.002e-25
Identity = 64/151 (42.38%), Postives = 93/151 (61.59%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKC---NYGAPEPNVSAREALE---LSSQQEYLKLXARYEALQRSQGISLGEELGPLNSKELESLERQLDMFLKPIRSTEL 450
            M RG+++LKRIEN ++RQVTF KRR GLLKKA ELSVLCDAE+ ++IFS +GKL+E  +  +M   +++Y KC     G+     +A+E L+   L  + E   L    E LQ+      G   G +N +EL  LE+ L+ ++  IRS ++
Sbjct:    1 MARGKIQLKRIENPVHRQVTFCKRRTGLLKKAKELSVLCDAEIGVVIFSPQGKLFELATKGTMEGMIDKYMKCTGGGRGSSSATFTAQEQLQPPNLDPKDEINVLKQEIEMLQKGISYMFGGGDGAMNLEELLLLEKHLEYWISQIRSAKM 151          
BLAST of EY728851 vs. ExPASy Swiss-Prot
Match: MAD23_ORYSJ (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.614e-25
Identity = 66/141 (46.81%), Postives = 95/141 (67.38%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLXARYEALQRSQGISLGEELGPLNSKELESLERQLDMFLKPIR 438
            MGRG++E+KRI+N  +RQVTF+KRR+GL KKA ELS+LCDAEV L++FS+  +LY+F +SSSM   +ERY +     P   ++A    +L  QQE   L  +   LQ      LG++L  L+ ++L++LE +L+M LK IR
Sbjct:    1 MGRGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDF-ASSSMKSIIERYNETKED-PHQTMNASSEAKL-WQQEAASLRQQLHNLQEYHRQLLGQQLSGLDVEDLQNLESKLEMSLKNIR 138          
The following BLAST results are available for this feature:
BLAST of EY728851 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
MAD56_ORYSI5.628e-2851.70MADS-box transcription factor 56 OS=Oryza sativa s... [more]
MAD20_ORYSJ2.793e-2745.83MADS-box transcription factor 20 OS=Oryza sativa s... [more]
AGL19_ARATH1.061e-2652.11Agamous-like MADS-box protein AGL19 OS=Arabidopsis... [more]
GGM13_GNEGN1.386e-2650.00MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 P... [more]
SOC1_ARATH1.811e-2648.28MADS-box protein SOC1 OS=Arabidopsis thaliana GN=S... [more]
MAD27_ORYSJ3.088e-2646.85MADS-box transcription factor 27 OS=Oryza sativa s... [more]
MAD50_ORYSJ6.880e-2651.39MADS-box transcription factor 50 OS=Oryza sativa s... [more]
AGL15_BRANA8.986e-2650.00Agamous-like MADS-box protein AGL15 OS=Brassica na... [more]
AGL12_ARATH2.002e-2542.38Agamous-like MADS-box protein AGL12 OS=Arabidopsis... [more]
MAD23_ORYSJ2.614e-2546.81MADS-box transcription factor 23 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-009-D10-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728851 ID=EY728851; Name=EY728851; organism=Citrus sinensis; type=EST; length=689bp
CCACGCGTCCGGAAAATGGGAAGGGGTAGGGTTGAGTTGAAGAGGATAGA
GAACAAGATCAACAGGCAAGTGACCTTTGCAAAGAGAAGAAATGGCCTAT
TGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTC
ATCATTTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAG
CATGCTCAAAACGCTTGAGAGGTACCAGAAGTGCAACTATGGAGCACCAG
AACCGAATGTGTCCGCAAGGGAGGCCCTGGAGCTAAGTAGCCAGCAAGAA
TATCTGAAGCTTANAGCACGATATGAAGCCCTACAGAGATCCCAAGGAAT
CTCCTTGGGAGAAGAACTTGGCCCTCTAAACAGCAAAGAGCTTGAGTCAC
TTGAAAGGCAGCTTGATATGTTCTTGAAGCCGATCAGATCAACAGAACTC
AGTACATGCTGGATTACCTTACTGAACTGGGCACATAGGGACAGTTGCTG
AGCGAAGCAAATTAGACCCTCAACAAGGGTGATGGAAGGGATATCAATGA
ACACACTTCATTGAATCTTATGCAAAGATATGTGGTATTGGCTTATAACA
ACTCAACTCCAGGCGATACTTCCTTTTCGCCTTGGAATGTGACCCCACTT
GCAATTGGATATCCCCTTGGGACCCATATCCGTGTCCAA
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