EY728851

Overview
NameEY728851
Unique NameEY728851
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728851 vs. ExPASy Swiss-Prot
Match: PIST_ARATH (Floral homeotic protein PISTILLATA OS=Arabidopsis thaliana GN=PI PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.102e-21
Identity = 61/150 (40.67%), Postives = 93/150 (62.00%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSML-KTLERYQKCN----YGAPEPNVSAREALELSSQQEYLKLXARYEALQRSQGISLGEELGPLNSKELESLERQLDMFLKPIRSTEL 450
            MGRG++E+KRIEN  NR VTF+KRRNGL+KKA E++VLCDA+VALIIF++ GK+ ++C  S  L   L++YQK +    + A   N+S  E   +  + + L+L  R+           GE++  LN K L ++E  ++  L  +R  ++
Sbjct:    1 MGRGKIEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCPSMDLGAMLDQYQKLSGKKLWDAKHENLS-NEIDRIKKENDSLQLELRH---------LKGEDIQSLNLKNLMAVEHAIEHGLDKVRDHQM 140          
BLAST of EY728851 vs. ExPASy Swiss-Prot
Match: JOIN_SOLLC (MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.703e-21
Identity = 62/140 (44.29%), Postives = 85/140 (60.71%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLXARYEALQRSQGISLGEELGPLNSKELESLERQLDMFLKPI 435
            M R ++++K+I+N   RQVTF+KRR GL KKA ELSVLCDA+VALIIFS+ GKL+++ SSSSM + LER    +    + +  + E L+L     Y +L               GEEL  LN +EL+ LER L+  L  +
Sbjct:    1 MAREKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDY-SSSSMKQILERRDLHSKNLEKLDQPSLE-LQLVENSNYSRLSKEISEKSHRLRQMRGEELQGLNIEELQQLERSLETGLSRV 138          
BLAST of EY728851 vs. ExPASy Swiss-Prot
Match: SVP_ARATH (MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20
Identity = 60/144 (41.67%), Postives = 89/144 (61.81%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLXARYEALQRSQGISLGEELGPLNSKELESLERQLDMFLKPIRSTE 447
            M R ++++++I+N   RQVTF+KRR GL KKA ELSVLCDA+VALIIFS+ GKL+EFC SSSM + LER+   +    + +  + E L+L    ++ ++               GEEL  L+ +EL+ LE+ L+  L  +  T+
Sbjct:    1 MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFC-SSSMKEVLERHNLQSKNLEKLDQPSLE-LQLVENSDHARMSKEIADKSHRLRQMRGEELQGLDIEELQQLEKALETGLTRVIETK 142          
BLAST of EY728851 vs. ExPASy Swiss-Prot
Match: MAD31_ORYSJ (MADS-box transcription factor 31 OS=Oryza sativa subsp. japonica GN=MADS31 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.939e-20
Identity = 57/142 (40.14%), Postives = 87/142 (61.27%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTL-ERYQKCNYGAPEPNVSAREALELSSQQEYLKLXARYEALQRSQGISLGEELGPLNSKELESLERQLDMFLKPIR 438
            MGRGRVELK+IEN  NRQVTF+KRR GLLKKA EL++LCDA++ +I+FS  GK+YE+ S    +  + +RY K    AP       + ++    QE  ++      L+      +G++L  L  +++ +LE+Q++  L  +R
Sbjct:    1 MGRGRVELKKIENPTNRQVTFSKRRMGLLKKANELAILCDAQIGVIVFSGTGKMYEYSSPPWRIANIFDRYLK----APSTRFEEMD-VQQRIIQEMTRMKDENNRLRIIMRQYMGDDLASLTLQDVSNLEQQIEFSLYKVR 137          
BLAST of EY728851 vs. ExPASy Swiss-Prot
Match: DEFA_ANTMA (Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.641e-19
Identity = 58/142 (40.85%), Postives = 86/142 (60.56%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTL-ERYQKCNYGAPEPNVSAREALELSSQQEYLKLXARYEALQRSQGISLGEELGPLNSKELESLERQLDMFLKPIR 438
            M RG++++KRIEN+ NRQVT++KRRNGL KKA+ELSVLCDA+V++I+ S+  KL+E+ S ++  K L ++YQK         V    +     Q+   KL      L+R     +GE L  L  +++ +L   +D  LK IR
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISPTTATKQLFDQYQKA------VGVDLWSSHYEKMQEHLKKLNEVNRNLRREIRQRMGESLNDLGYEQIVNLIEDMDNSLKLIR 136          
BLAST of EY728851 vs. ExPASy Swiss-Prot
Match: MADS4_ORYSJ (MADS-box transcription factor 4 OS=Oryza sativa subsp. japonica GN=MADS4 PE=1 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 2.144e-19
Identity = 57/144 (39.58%), Postives = 87/144 (60.42%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSS------MLKTLERYQ----KCNYGAPEPNVSAREALELSSQQEYLKLXARYEALQRSQGISLGEELGPLNSKELESLERQLD 417
            MGRG++E+KRIEN  NRQVTF+KRR G+LKKA E+ VLCDAEV ++IFS+ GKL ++C+  +      + + LE+YQ    K  +     ++SA E   +  + + +++  R+           GE+L  L  KEL ++E  L+
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRAGILKKAREIGVLCDAEVGVVIFSSAGKLSDYCTPKTTSVFPPLSRILEKYQTNSGKILWDEKHKSLSA-EIDRVKKENDNMQIELRH---------MKGEDLNSLQPKELIAIEEALN 134          
BLAST of EY728851 vs. ExPASy Swiss-Prot
Match: TT16_ARATH (Protein TRANSPARENT TESTA 16 OS=Arabidopsis thaliana GN=TT16 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.657e-19
Identity = 58/145 (40.00%), Postives = 82/145 (56.55%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSS-MLKTLERYQKCNYGAPEPNVSAREALELSSQ---QEYLKLXARYEALQRSQGISLGEELGPLNSKELESLERQLDMFLKPIR 438
            MGRG++E+K+IEN+  RQVTF+KRR GL+KK  ELS+LCDA + LI+FS  GKL EFCS  + M + ++RY   N      +   +E L    +   +E   L  R            G +L  +   EL+ LERQL+  +  +R
Sbjct:    1 MGRGKIEIKKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSEQNRMPQLIDRYLHTNGLRLPDHHDDQEQLHHEMELLRRETCNLELRLRPFH-------GHDLASIPPNELDGLERQLEHSVLKVR 138          
BLAST of EY728851 vs. ExPASy Swiss-Prot
Match: CMB2_DIACA (MADS-box protein CMB2 OS=Dianthus caryophyllus GN=CMB2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.237e-19
Identity = 55/148 (37.16%), Postives = 89/148 (60.14%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS-SMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLXARYEALQRSQGISLGEELGPLNSKELESLERQLDMFLKPIRSTELST 456
            MGRG++E+++IENK NRQVTF+KRRNG++KKA EL+VLCDA+V+L++ S+  KL+ + S   S+ K  + YQK         V          Q+++ K+      L+R     +G +L  L   EL +L+++++  +  IR+ +  T
Sbjct:    1 MGRGKLEIRKIENKTNRQVTFSKRRNGIMKKAQELTVLCDAKVSLLMISSTHKLHHYLSPGVSLKKMYDEYQKIE------GVDLWRKQWERMQEQHRKVLELNSLLRREISRRMGGDLEGLTLVELSALQQEMEEAIIQIRNKKYHT 142          
BLAST of EY728851 vs. ExPASy Swiss-Prot
Match: MAD30_ORYSJ (MADS-box transcription factor 30 OS=Oryza sativa subsp. japonica GN=MADS30 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.146e-19
Identity = 52/143 (36.36%), Postives = 84/143 (58.74%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLXARYEALQRSQGISLGEELGPLNS-KELESLERQLDMFLKPIRS 441
            MG+G++E+KRIE+   RQVTF+KRR G LKKA EL+VLCDA+V +++FS++GKL++FCS   +L  +E + +         +      +     E  +L    + L+ S     GE+L  +++  EL  L+ QL+  L  + +
Sbjct:    1 MGQGKIEMKRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCSPPVIL--MELFHRYEITTRNTRLQETNRDDEQMVMEITRLRNEIDQLEASLRRQTGEDLSSVSTVDELSQLQLQLESSLSKVHA 141          
BLAST of EY728851 vs. ExPASy Swiss-Prot
Match: AP3_ARATH (Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.064e-18
Identity = 57/148 (38.51%), Postives = 91/148 (61.49%), Query Frame = 1
Query:   16 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTL-ERYQKCNYGAPEPNVSAREALELSSQQEYLKLXARYEALQRSQGISLGEELGPLNSKELESLERQLDMFLKPIRSTELST 456
            M RG++++KRIEN+ NRQVT++KRRNGL KKA+EL+VLCDA V++I+FS+  KL+E+ S ++  K + + YQ  +    + +V A +   +  Q+   KL      L+      LGE L  L+ +EL  LE +++   K +R  +  +
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISPNTTTKEIVDLYQTIS----DVDVWATQYERM--QETKRKLLETNRNLRTQIKQRLGECLDELDIQELRRLEDEMENTFKLVRERKFKS 142          
The following BLAST results are available for this feature:
BLAST of EY728851 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
PIST_ARATH5.102e-2140.67Floral homeotic protein PISTILLATA OS=Arabidopsis ... [more]
JOIN_SOLLC8.703e-2144.29MADS-box protein JOINTLESS OS=Solanum lycopersicum... [more]
SVP_ARATH1.137e-2041.67MADS-box protein SVP OS=Arabidopsis thaliana GN=SV... [more]
MAD31_ORYSJ1.939e-2040.14MADS-box transcription factor 31 OS=Oryza sativa s... [more]
DEFA_ANTMA1.641e-1940.85Floral homeotic protein DEFICIENS OS=Antirrhinum m... [more]
MADS4_ORYSJ2.144e-1939.58MADS-box transcription factor 4 OS=Oryza sativa su... [more]
TT16_ARATH3.657e-1940.00Protein TRANSPARENT TESTA 16 OS=Arabidopsis thalia... [more]
CMB2_DIACA6.237e-1937.16MADS-box protein CMB2 OS=Dianthus caryophyllus GN=... [more]
MAD30_ORYSJ8.146e-1936.36MADS-box transcription factor 30 OS=Oryza sativa s... [more]
AP3_ARATH1.064e-1838.51Floral homeotic protein APETALA 3 OS=Arabidopsis t... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-009-D10-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728851 ID=EY728851; Name=EY728851; organism=Citrus sinensis; type=EST; length=689bp
CCACGCGTCCGGAAAATGGGAAGGGGTAGGGTTGAGTTGAAGAGGATAGA
GAACAAGATCAACAGGCAAGTGACCTTTGCAAAGAGAAGAAATGGCCTAT
TGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTC
ATCATTTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAG
CATGCTCAAAACGCTTGAGAGGTACCAGAAGTGCAACTATGGAGCACCAG
AACCGAATGTGTCCGCAAGGGAGGCCCTGGAGCTAAGTAGCCAGCAAGAA
TATCTGAAGCTTANAGCACGATATGAAGCCCTACAGAGATCCCAAGGAAT
CTCCTTGGGAGAAGAACTTGGCCCTCTAAACAGCAAAGAGCTTGAGTCAC
TTGAAAGGCAGCTTGATATGTTCTTGAAGCCGATCAGATCAACAGAACTC
AGTACATGCTGGATTACCTTACTGAACTGGGCACATAGGGACAGTTGCTG
AGCGAAGCAAATTAGACCCTCAACAAGGGTGATGGAAGGGATATCAATGA
ACACACTTCATTGAATCTTATGCAAAGATATGTGGTATTGGCTTATAACA
ACTCAACTCCAGGCGATACTTCCTTTTCGCCTTGGAATGTGACCCCACTT
GCAATTGGATATCCCCTTGGGACCCATATCCGTGTCCAA
back to top