DR405296

Overview
NameDR405296
Unique NameDR405296
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405296 vs. ExPASy Swiss-Prot
Match: METK1_SOLLC (S-adenosylmethionine synthetase 1 OS=Solanum lycopersicum GN=SAM1 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.751e-52
Identity = 97/103 (94.17%), Postives = 102/103 (99.03%), Query Frame = 1
Query:    4 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 312
            AKSIVA+GLARRCIVQVSYAIGVPEPLSVFVD+YGTGKIPD+EILKIVKE+FDFRPGMM+INLDLKRGGN RFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ
Sbjct:  290 AKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDREILKIVKENFDFRPGMMSINLDLKRGGNRRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 392          
BLAST of DR405296 vs. ExPASy Swiss-Prot
Match: METK1_BRAJU (S-adenosylmethionine synthetase 1 OS=Brassica juncea GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 3.593e-52
Identity = 96/104 (92.31%), Postives = 101/104 (97.12%), Query Frame = 1
Query:    4 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 315
            AKS+VANG+ARR +VQVSYAIGVPEP SVFVD+YGTG IPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW+KPQA
Sbjct:  290 AKSVVANGMARRALVQVSYAIGVPEPFSVFVDTYGTGLIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWDKPQA 393          
BLAST of DR405296 vs. ExPASy Swiss-Prot
Match: METK2_SOLLC (S-adenosylmethionine synthetase 2 OS=Solanum lycopersicum GN=SAM2 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 4.693e-52
Identity = 96/104 (92.31%), Postives = 102/104 (98.08%), Query Frame = 1
Query:    4 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 315
            AKSIVANGLARRCIVQVSYAIGVPEPLSVFVD+YGTGKIPDKEIL IVKE+FDFRPGM++INLDL RGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW+KP+A
Sbjct:  290 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILNIVKENFDFRPGMISINLDLLRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWDKPEA 393          
BLAST of DR405296 vs. ExPASy Swiss-Prot
Match: METK3_ACTCH (S-adenosylmethionine synthetase 3 (Fragment) OS=Actinidia chinensis GN=SAM3 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 8.005e-52
Identity = 97/103 (94.17%), Postives = 101/103 (98.06%), Query Frame = 1
Query:    4 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 312
            AKSIVA+GLARRCIVQVSYAIGVPEPLSVFVD+YGTGKIPDKEILKIVKESFDFRPGM+ I+LDLKRGGNGRFLKTAAYGHFGRDD DFTWEVVKPLKWEKPQ
Sbjct:  257 AKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKESFDFRPGMIAIHLDLKRGGNGRFLKTAAYGHFGRDDADFTWEVVKPLKWEKPQ 359          
BLAST of DR405296 vs. ExPASy Swiss-Prot
Match: METK2_DAUCA (S-adenosylmethionine synthetase 2 OS=Daucus carota GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 8.005e-52
Identity = 97/104 (93.27%), Postives = 100/104 (96.15%), Query Frame = 1
Query:    4 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 315
            AKSIVANGLARRCIVQVSYAIGVP+PLSVFVDSYGTG IPDKEILKIVKE+FDFRPGM+ INLDLKRGGN RFLKTAAYGHFGRDD DFTWEVVKPLKWEKPQA
Sbjct:  290 AKSIVANGLARRCIVQVSYAIGVPDPLSVFVDSYGTGNIPDKEILKIVKETFDFRPGMIAINLDLKRGGNNRFLKTAAYGHFGRDDADFTWEVVKPLKWEKPQA 393          
BLAST of DR405296 vs. ExPASy Swiss-Prot
Match: METK_SOLBR (S-adenosylmethionine synthetase OS=Solanum brevidens GN=SAMS PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.046e-51
Identity = 96/103 (93.20%), Postives = 101/103 (98.06%), Query Frame = 1
Query:    4 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 312
            AKSIVA+GLARRCIVQVSYAIGVPEPLSVFVD+YGTGKIPD+EILKIVKE+FDFRPGMM+INLDLKRGGNGRFLKTAAYGHFGRDD DFTWEVVKPLKWE PQ
Sbjct:  290 AKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDREILKIVKENFDFRPGMMSINLDLKRGGNGRFLKTAAYGHFGRDDADFTWEVVKPLKWENPQ 392          
BLAST of DR405296 vs. ExPASy Swiss-Prot
Match: METK1_ORYSJ (S-adenosylmethionine synthetase 1 OS=Oryza sativa subsp. japonica GN=SAM1 PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.046e-51
Identity = 95/104 (91.35%), Postives = 102/104 (98.08%), Query Frame = 1
Query:    4 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 315
            AKSIVA+GLARRCIVQVSYAIGVPEPLSVFVD+YGTG+IPDKEILKIVKE+FDFRPGM+ INLDLK+GGNGR+LKTAAYGHFGRDDPDFTWEVVKPLKWEKP A
Sbjct:  293 AKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYGTGRIPDKEILKIVKENFDFRPGMIIINLDLKKGGNGRYLKTAAYGHFGRDDPDFTWEVVKPLKWEKPSA 396          
BLAST of DR405296 vs. ExPASy Swiss-Prot
Match: METK1_ORYSI (S-adenosylmethionine synthetase 1 OS=Oryza sativa subsp. indica GN=SAM1 PE=2 SV=2)

HSP 1 Score: 202.986 bits (515), Expect = 1.046e-51
Identity = 95/104 (91.35%), Postives = 102/104 (98.08%), Query Frame = 1
Query:    4 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 315
            AKSIVA+GLARRCIVQVSYAIGVPEPLSVFVD+YGTG+IPDKEILKIVKE+FDFRPGM+ INLDLK+GGNGR+LKTAAYGHFGRDDPDFTWEVVKPLKWEKP A
Sbjct:  293 AKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYGTGRIPDKEILKIVKENFDFRPGMIIINLDLKKGGNGRYLKTAAYGHFGRDDPDFTWEVVKPLKWEKPSA 396          
BLAST of DR405296 vs. ExPASy Swiss-Prot
Match: METK1_ARATH (S-adenosylmethionine synthetase 1 OS=Arabidopsis thaliana GN=SAM1 PE=1 SV=2)

HSP 1 Score: 202.986 bits (515), Expect = 1.046e-51
Identity = 96/104 (92.31%), Postives = 101/104 (97.12%), Query Frame = 1
Query:    4 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 315
            AKS+VANG+ARR +VQVSYAIGVPEPLSVFVD+Y TG IPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW+KPQA
Sbjct:  290 AKSVVANGMARRALVQVSYAIGVPEPLSVFVDTYETGLIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWDKPQA 393          
BLAST of DR405296 vs. ExPASy Swiss-Prot
Match: METK_LITCN (S-adenosylmethionine synthetase OS=Litchi chinensis GN=SAMS PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.366e-51
Identity = 95/104 (91.35%), Postives = 103/104 (99.04%), Query Frame = 1
Query:    4 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 315
            AKSIVA+GLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPD+EILKIVKE+FDFRPGM+++NLDLKRGGNGRFLKTAAYGHFGR+DPDFTWEVVKPLKW+K QA
Sbjct:  290 AKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDREILKIVKENFDFRPGMISVNLDLKRGGNGRFLKTAAYGHFGREDPDFTWEVVKPLKWDKVQA 393          
The following BLAST results are available for this feature:
BLAST of DR405296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK1_SOLLC2.751e-5294.17S-adenosylmethionine synthetase 1 OS=Solanum lycop... [more]
METK1_BRAJU3.593e-5292.31S-adenosylmethionine synthetase 1 OS=Brassica junc... [more]
METK2_SOLLC4.693e-5292.31S-adenosylmethionine synthetase 2 OS=Solanum lycop... [more]
METK3_ACTCH8.005e-5294.17S-adenosylmethionine synthetase 3 (Fragment) OS=Ac... [more]
METK2_DAUCA8.005e-5293.27S-adenosylmethionine synthetase 2 OS=Daucus carota... [more]
METK_SOLBR1.046e-5193.20S-adenosylmethionine synthetase OS=Solanum brevide... [more]
METK1_ORYSJ1.046e-5191.35S-adenosylmethionine synthetase 1 OS=Oryza sativa ... [more]
METK1_ORYSI1.046e-5191.35S-adenosylmethionine synthetase 1 OS=Oryza sativa ... [more]
METK1_ARATH1.046e-5192.31S-adenosylmethionine synthetase 1 OS=Arabidopsis t... [more]
METK_LITCN1.366e-5191.35S-adenosylmethionine synthetase OS=Litchi chinensi... [more]

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Properties
Property NameValue
Genbank descriptionCSAD-PNP1242A07 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone CSAD-PNP1242A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405296 ID=DR405296; Name=DR405296; organism=Citrus sinensis; type=EST; length=629bp
GGGGCTAAGAGCATTGTTGCAAACGGGCTTGCTCGCAGGTGCATTGTCCA
AGTCTCCTATGCCATTGGTGTGCCTGAGCCATTGTCTGTTTTTGTGGACT
CATATGGAACCGGCAAGATTCCTGACAAGGAGATCCTCAAAATTGTGAAG
GAAAGCTTTGATTTCAGGCCAGGAATGATGACCATCAATTTGGATCTCAA
AAGGGGCGGTAATGGCAGGTTCTTGAAGACTGCTGCCTATGGACACTTTG
GCAGGGATGACCCAGACTTCACTTGGGAAGTTGTGAAGCCCCTCAAGTGG
GAAAAGCCTCAAGCTTAAATTTGAGTTGAAAAGTGAAAACTATCCCTGCT
GTTCAAGTTTGCTTCTATTGGTAGTGGATGAATAATTTGAATATTATCTT
GCTGCTGCTTTGTAATACTAAGCAAATCTCCTGTGTTCAGAACTCATACA
TGTTCCCCATTCAATTCCTTTCTTTTTCTTCTTTCCCCACTTCTTTTTTG
GTTTTGGTTTAATGTACCATGTCACCACTGTTGTGTAGTGATATCGATTG
AGAATTTTGCTCAACTGGTGCCTGGAATTAGTAAAATTCTTCCTTTTGCC
GAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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