DR405270
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DR405270 vs. ExPASy Swiss-Prot
Match: PSMD2_RAT (26S proteasome non-ATPase regulatory subunit 2 OS=Rattus norvegicus GN=Psmd2 PE=2 SV=1) HSP 1 Score: 244.588 bits (623), Expect = 3.424e-64 Identity = 123/237 (51.90%), Postives = 165/237 (69.62%), Query Frame = 2 Query: 8 EKIRKYXXMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGE-----------------------AYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFL 649 E R + + CAYAG+GNVLKVQ LL C++H + E A+QG AVLGIA++AM EE+G EMA+R+ HLL+YGE +RRAVPLAL L+ +SNP++N++DTLS+ SHD D EV+ ++ ++G++GSGTNNAR+A MLR L+ Y+ KD N LF VR+AQGL H+GKG LTL PYHSDR L+S A+AG++T L + LD++ +I+GK HYVLY L Sbjct: 585 EPFRSFANTLVDVCAYAGSGNVLKVQQLLHICSEHFDSKEKEEDKDKKEKKDKDKKEAPADMGAHQGVAVLGIALIAMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLSKFSHDADPEVSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHLGKGTLTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGL 821
BLAST of DR405270 vs. ExPASy Swiss-Prot
Match: PSMD2_PONAB (26S proteasome non-ATPase regulatory subunit 2 OS=Pongo abelii GN=PSMD2 PE=2 SV=1) HSP 1 Score: 244.588 bits (623), Expect = 3.424e-64 Identity = 123/237 (51.90%), Postives = 165/237 (69.62%), Query Frame = 2 Query: 8 EKIRKYXXMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGE-----------------------AYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFL 649 E R + + CAYAG+GNVLKVQ LL C++H + E A+QG AVLGIA++AM EE+G EMA+R+ HLL+YGE +RRAVPLAL L+ +SNP++N++DTLS+ SHD D EV+ ++ ++G++GSGTNNAR+A MLR L+ Y+ KD N LF VR+AQGL H+GKG LTL PYHSDR L+S A+AG++T L + LD++ +I+GK HYVLY L Sbjct: 585 EPFRSFANTLVDVCAYAGSGNVLKVQQLLHICSEHFDSKEKEEDKDKKEKKDKDKKEAPADMGAHQGVAVLGIALIAMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLSKFSHDADPEVSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHLGKGTLTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGL 821
BLAST of DR405270 vs. ExPASy Swiss-Prot
Match: PSMD2_MOUSE (26S proteasome non-ATPase regulatory subunit 2 OS=Mus musculus GN=Psmd2 PE=1 SV=1) HSP 1 Score: 244.588 bits (623), Expect = 3.424e-64 Identity = 123/237 (51.90%), Postives = 165/237 (69.62%), Query Frame = 2 Query: 8 EKIRKYXXMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGE-----------------------AYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFL 649 E R + + CAYAG+GNVLKVQ LL C++H + E A+QG AVLGIA++AM EE+G EMA+R+ HLL+YGE +RRAVPLAL L+ +SNP++N++DTLS+ SHD D EV+ ++ ++G++GSGTNNAR+A MLR L+ Y+ KD N LF VR+AQGL H+GKG LTL PYHSDR L+S A+AG++T L + LD++ +I+GK HYVLY L Sbjct: 585 EPFRSFANTLVDVCAYAGSGNVLKVQQLLHICSEHFDSKEKEEDKDKKEKKDKDKKEAPADMGAHQGVAVLGIALIAMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLSKFSHDADPEVSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHLGKGTLTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGL 821
BLAST of DR405270 vs. ExPASy Swiss-Prot
Match: PSMD2_HUMAN (26S proteasome non-ATPase regulatory subunit 2 OS=Homo sapiens GN=PSMD2 PE=1 SV=3) HSP 1 Score: 244.588 bits (623), Expect = 3.424e-64 Identity = 123/237 (51.90%), Postives = 165/237 (69.62%), Query Frame = 2 Query: 8 EKIRKYXXMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGE-----------------------AYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFL 649 E R + + CAYAG+GNVLKVQ LL C++H + E A+QG AVLGIA++AM EE+G EMA+R+ HLL+YGE +RRAVPLAL L+ +SNP++N++DTLS+ SHD D EV+ ++ ++G++GSGTNNAR+A MLR L+ Y+ KD N LF VR+AQGL H+GKG LTL PYHSDR L+S A+AG++T L + LD++ +I+GK HYVLY L Sbjct: 585 EPFRSFANTLVDVCAYAGSGNVLKVQQLLHICSEHFDSKEKEEDKDKKEKKDKDKKEAPADMGAHQGVAVLGIALIAMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLSKFSHDADPEVSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHLGKGTLTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGL 821
BLAST of DR405270 vs. ExPASy Swiss-Prot
Match: PSMD2_BOVIN (26S proteasome non-ATPase regulatory subunit 2 OS=Bos taurus GN=PSMD2 PE=1 SV=2) HSP 1 Score: 244.588 bits (623), Expect = 3.424e-64 Identity = 123/237 (51.90%), Postives = 165/237 (69.62%), Query Frame = 2 Query: 8 EKIRKYXXMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGE-----------------------AYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFL 649 E R + + CAYAG+GNVLKVQ LL C++H + E A+QG AVLGIA++AM EE+G EMA+R+ HLL+YGE +RRAVPLAL L+ +SNP++N++DTLS+ SHD D EV+ ++ ++G++GSGTNNAR+A MLR L+ Y+ KD N LF VR+AQGL H+GKG LTL PYHSDR L+S A+AG++T L + LD++ +I+GK HYVLY L Sbjct: 585 EPFRSFANTLVDVCAYAGSGNVLKVQQLLHICSEHFDSKEKEEDKDKKEKKDKDKKEAPADMGAHQGVAVLGIALIAMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLSKFSHDADPEVSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHLGKGTLTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGL 821
BLAST of DR405270 vs. ExPASy Swiss-Prot
Match: PSMD2_DICDI (26S proteasome non-ATPase regulatory subunit 2 OS=Dictyostelium discoideum GN=psmD2 PE=2 SV=1) HSP 1 Score: 236.884 bits (603), Expect = 7.140e-62 Identity = 118/208 (56.73%), Postives = 157/208 (75.48%), Query Frame = 2 Query: 20 KYXXMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLY 643 +Y +T+ +CAYAGTGNVLKVQN+L C+ E + G AVL IA++AM EELG +M +R +HLLQ G +I+RA+PLALGLL SNP++ +MD LS+LSHD D EVA A++SLGLIG+GTNNARI GMLR L+ +Y KD +L F VRIAQGL+H+GKG +T+NPYHSDR L+SP A+ G++ L A LD+K ++ + HY+ + Sbjct: 591 EYARLTVEACAYAGTGNVLKVQNMLHFCSDGQEN--PHHGLAVLSIALIAMGEELGSDMCLRMFDHLLQKGNVHIKRAIPLALGLLSPSNPRIAIMDILSKLSHDNDPEVAQGAILSLGLIGAGTNNARIGGMLRALAVFYGKDVHLFF-VRIAQGLLHLGKGTMTINPYHSDRTLMSPVAVGGLLALLHAGLDIKNILSTQSHYLFF 795
BLAST of DR405270 vs. ExPASy Swiss-Prot
Match: RPN1_NEUCR (26S proteasome regulatory subunit rpn-1 OS=Neurospora crassa GN=rpn-1 PE=3 SV=2) HSP 1 Score: 231.106 bits (588), Expect = 3.918e-60 Identity = 114/207 (55.07%), Postives = 153/207 (73.91%), Query Frame = 2 Query: 47 CAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGP------AVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFL 649 CA+AGTG VLK+Q LL C +H E GE +G AVLGI ++AM E++G EM +R HL+ YGE NIRRAVPLA+GL+ SNP++ V DTLSR SHD D+EVA+ A+ ++GL+G+GTNNAR+A +LR L+SYY++D LF VRIAQGL+HMGKG L+++P+H+DR +LS A AG++ L A +D K I K HY+LY++ Sbjct: 607 CAWAGTGAVLKIQELLHICNEHIEDGEEKKGEELLQAYAVLGIGLIAMGEDVGQEMVLRHFGHLMHYGEANIRRAVPLAMGLISPSNPQMKVYDTLSRYSHDNDNEVAINAIFAMGLLGAGTNNARLAQLLRQLASYYHRDQESLFMVRIAQGLLHMGKGTLSVSPFHTDRQVLSNVATAGLLAVLVAMIDAKQFITSKSHYLLYWI 813
BLAST of DR405270 vs. ExPASy Swiss-Prot
Match: RPN1_SCHPO (26S proteasome regulatory subunit rpn1 OS=Schizosaccharomyces pombe GN=rpn1 PE=1 SV=2) HSP 1 Score: 219.935 bits (559), Expect = 9.032e-57 Identity = 106/220 (48.18%), Postives = 155/220 (70.45%), Query Frame = 2 Query: 11 KIRKYXXMTLLSCAYAGTGNVLKVQNLLGHCAQH-----HEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFLCL 655 KI + + + C+YAGTGNVL +Q LL C++ E Q A LG+A +AM E++G EM +R +H++ YGE +IR+A+PLALGLL SNP++ + DTLSR SHD D +VA A+ ++GL+G+GT+NAR+A +LR L+SYY+K++N LF VRIAQGL+++GKG +TLNPYH++R +L TA AG++T + A LD ++ H++LY + L Sbjct: 585 KIARQAEILVDICSYAGTGNVLHIQKLLHICSEPPSDDAKESETTIQTFAALGVATIAMGEDIGAEMVLRHFDHMMHYGEPSIRKAIPLALGLLSASNPQMRIFDTLSRYSHDNDLDVAYNAIFAMGLVGAGTSNARLAQLLRQLASYYHKESNALFMVRIAQGLLYLGKGTMTLNPYHTERQILGQTAFAGLMTVVLAMLDANTFVLDTSHWLLYAITL 804
BLAST of DR405270 vs. ExPASy Swiss-Prot
Match: RPN1_YEAST (26S proteasome regulatory subunit RPN1 OS=Saccharomyces cerevisiae GN=RPN1 PE=1 SV=3) HSP 1 Score: 163.31 bits (412), Expect = 1.003e-39 Identity = 77/169 (45.56%), Postives = 123/169 (72.78%), Query Frame = 2 Query: 143 AVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFL 649 AVLGIA++A+ E++G EM++R HL+ YG ++IRR VPLA+G++ +S+P++ V DTL+R SHD D EV+M ++ ++GL G+GTNNAR+A +LR L+SYY ++ + LF R+AQGL+H+GKG +T++ + +D +L+ LA I+TT + ++ K+H + Y L Sbjct: 739 AVLGIALIALGEDIGKEMSLRHFGHLMHYGNEHIRRMVPLAMGIVSVSDPQMKVFDTLTRFSHDADLEVSMNSIFAMGLCGAGTNNARLAQLLRQLASYYSREQDALFITRLAQGLLHLGKGTMTMDVF-NDAHVLNKVTLASILTTAVGLVSPSFML--KHHQLFYML 904
BLAST of DR405270 vs. ExPASy Swiss-Prot
Match: RPN1_CANGA (26S proteasome regulatory subunit RPN1 OS=Candida glabrata GN=RPN1 PE=3 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 3.812e-39 Identity = 76/169 (44.97%), Postives = 121/169 (71.60%), Query Frame = 2 Query: 143 AVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMKAVIVGKYHYVLYFL 649 AV+GIA++ M EE+G EM++R HL+ YG ++IRR VPLA+GL+ +++P++ V DTL+R SHD D +V+M ++ ++GL G GTNNAR+A +LR L+SYY ++ + LF R+AQGLVH+GKG +T++ + +D +L+ LA ++T L + ++ K+H + Y L Sbjct: 729 AVIGIALITMGEEIGKEMSLRHFGHLMHYGNEHIRRMVPLAMGLVSVADPQMKVFDTLTRFSHDPDLDVSMNSIFAMGLCGVGTNNARLAQLLRQLASYYSREQDALFITRLAQGLVHLGKGTMTMDIF-NDAHVLNKVTLASLLTVLVGLISPSFIL--KHHQLFYML 894 The following BLAST results are available for this feature:
BLAST of DR405270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 11
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Sequences
The
following sequences are available for this feature:
EST sequence >DR405270 ID=DR405270; Name=DR405270; organism=Citrus sinensis; type=EST; length=656bpback to top |