DR405270

Overview
NameDR405270
Unique NameDR405270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7518 contig Csv1_Contig7518:29..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR405270 vs. ExPASy Swiss-Prot
Match: RPN1_ENCCU (26S proteasome regulatory subunit RPN1 OS=Encephalitozoon cuniculi GN=RPN1 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.503e-27
Identity = 69/217 (31.80%), Postives = 121/217 (55.76%), Query Frame = 2 
Query:    5 GEKIRKYXXMTLLSCAYAGTGNVLKVQNLLGHCAQHHEKGEAYQGPAVLGIAMVAMAEELGLEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGSGTNNARIAGMLRNLSSYYYKDANLLFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPTALAGIVTTLFACLDMK-AVIVGKYHYVLYFLC 652
            G  + K+  + +    Y GTG+   ++++L       +     +   +L  A+V+M +E   +M  R +   L     ++R  +PL   +L  SNP+VNV+D L +  +  ++   ++ ++SLGLIG+GT N+RI  +L    SYYYKD+ +L  ++IAQGLV +GKGLL+++P + D+    P    G+ +T+F  LD   + +V  + Y+ + LC
Sbjct:  508 GGALSKHESILIKGFQYVGTGDSNVIESILTDSFTG-DTDALLESLGLLSCALVSMGDETSSQMVGRIVSSSLLLDSSHLRSVLPLCYSILYPSNPQVNVLDMLEKSLNIGETNCIISTIVSLGLIGAGTLNSRITKILDQQYSYYYKDSKVLPVLKIAQGLVSLGKGLLSISPLYFDKTTFMPKNTIGLFSTVFMLLDSSISPLVSSHAYMFFLLC 723
The following BLAST results are available for this feature:
BLAST of DR405270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RPN1_ENCCU1.503e-2731.8026S proteasome regulatory subunit RPN1 OS=Encephal... [more]

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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240O24 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240O24 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405270 ID=DR405270; Name=DR405270; organism=Citrus sinensis; type=EST; length=656bp
GGCCGGGGAAAAGATCAGGAAATATTNNNNTATGACACTGCTCTCTTGTG
CATATGCTGGAACTGGGAATGTCCTCAAGGTTCAAAATCTTTTGGGTCAT
TGTGCACAGCATCATGAGAAAGGTGAAGCCTACCAAGGACCTGCTGTGCT
TGGAATTGCTATGGTAGCTATGGCTGAAGAATTGGGTCTTGAGATGGCAA
TTCGATCATTAGAGCACCTTTTGCAGTATGGAGAGCAGAACATTCGTCGT
GCAGTTCCGTTGGCTCTTGGTCTCCTATGTATATCAAACCCAAAGGTTAA
TGTTATGGACACATTAAGCCGGCTAAGCCATGATACTGATTCAGAAGTAG
CTATGGCTGCCGTTATATCATTGGGTTTGATAGGGTCGGGAACGAACAAT
GCTAGAATAGCTGGCATGCTTCGCAATCTCTCAAGCTACTACTACAAAGA
TGCCAATCTTCTGTTTTGTGTCCGAATTGCTCAAGGATTAGTGCACATGG
GAAAGGGTCTCTTGACCCTTAACCCATACCATTCTGATCGCTTCTTGCTA
TCACCGACTGCTCTTGCTGGTATAGTTACCACTCTTTTTGCATGTCTAGA
CATGAAGGCAGTCATCGTGGGGAAATATCATTATGTTCTATACTTCCTTT
GTCTTG
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