DR405260

Overview
NameDR405260
Unique NameDR405260
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405260 vs. ExPASy Swiss-Prot
Match: NAT8_ARATH (Nucleobase-ascorbate transporter 8 OS=Arabidopsis thaliana GN=NAT8 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.794e-23
Identity = 53/102 (51.96%), Postives = 73/102 (71.57%), Query Frame = 2
Query:  320 EQLQQLQYCIHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSII--NDYND 619
            +QL  + YC+ S PPWP+ +LL FQHY+VMLGTTVLI + LV  +   + DK ++IQ+LLF+SG+NTL Q+ FGTRLP V+G S ++    +SI+    YND
Sbjct:   25 DQLYGITYCLTSPPPWPETILLGFQHYLVMLGTTVLIPTMLVSKIDARNEDKVKLIQTLLFVSGINTLFQSFFGTRLPAVIGASYSYVPTTMSIVLAARYND 126          
BLAST of DR405260 vs. ExPASy Swiss-Prot
Match: NAT12_ARATH (Nucleobase-ascorbate transporter 12 OS=Arabidopsis thaliana GN=NAT12 PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 1.257e-15
Identity = 38/91 (41.76%), Postives = 55/91 (60.44%), Query Frame = 2
Query:  335 LQYCIHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIIN 607
            ++Y +   P          QHY+ MLG+ +L+   +VP MGG H +   V+ ++LF+SG+ TLL T FG+RLP + GPS  F  P L+IIN
Sbjct:  169 MKYGLRDTPGLVPIGFYGLQHYLSMLGSLILVPLVIVPAMGGSHEEVANVVSTVLFVSGITTLLHTSFGSRLPLIQGPSFVFLAPALAIIN 259          
BLAST of DR405260 vs. ExPASy Swiss-Prot
Match: NAT11_ARATH (Nucleobase-ascorbate transporter 11 OS=Arabidopsis thaliana GN=NAT11 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.785e-12
Identity = 33/91 (36.26%), Postives = 52/91 (57.14%), Query Frame = 2
Query:  335 LQYCIHSNPPWPQALLLAFQHYIVMLGTTVLISSTLVPLMGGGHGDKGRVIQSLLFMSGLNTLLQTLFGTRLPTVMGPSAAFTLPVLSIIN 607
            +++ +  NP +   +    QHY+ ++G+ V I   +VP M G   D   VI ++L ++G+ T+L   FGTRLP V G S  +  PVL +IN
Sbjct:  175 MKFGLRDNPGFVPLIYYGLQHYLSLVGSLVFIPLVIVPAMDGSDKDTASVISTMLLLTGVTTILHCYFGTRLPLVQGSSFVYLAPVLVVIN 265          
The following BLAST results are available for this feature:
BLAST of DR405260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
NAT8_ARATH2.794e-2351.96Nucleobase-ascorbate transporter 8 OS=Arabidopsis ... [more]
NAT12_ARATH1.257e-1541.76Nucleobase-ascorbate transporter 12 OS=Arabidopsis... [more]
NAT11_ARATH3.785e-1236.26Nucleobase-ascorbate transporter 11 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240O12 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240O12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405260 ID=DR405260; Name=DR405260; organism=Citrus sinensis; type=EST; length=642bp
GGGGAGGTTCCTTGTACTTTATTTTGTGAAGGAGGAGCTCTCTTCATTAA
TAATAATAAAATGATCTTGAGCTGAGCCTAACCCGAGCTTCTTCTTCTTA
ATTTATTTTTTCCATTTTCGCTTTTCGGCTTCAAGAAGAATAACAAATAC
GCTCGTTTTATTTCTCTGTAAAAGGAGGAAAATAATAACAAAGAGAGAGA
GGGAGAGATAGTAGTTAGAAGAAGAAATGGGGGAAACGGCCGGCCACCAC
CCGCCTCCACCACCGCAGGCGGCACCGCCGTCTCTTGGACTTTCAAGGGG
TCCCATTTGGACTCCAGCCGAGCAACTCCAGCAGCTTCAGTACTGCATCC
ACTCCAATCCTCCATGGCCTCAAGCGCTCTTACTAGCTTTCCAACACTAT
ATCGTAATGCTTGGAACAACAGTCTTAATTTCCAGTACACTGGTGCCTCT
AATGGGTGGGGGCCATGGTGATAAGGGGCGAGTGATTCAATCTTTGTTGT
TCATGTCGGGTCTGAATACGCTGCTTCAAACACTTTTTGGGACAAGACTT
CCTACGGTGATGGGTCCATCCGCTGCTTTCACCCTGCCAGTATTGTCAAT
CATCAATGATTACAATGACGGGAGCTTCACATCTGAGCATGA
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