DR405251

Overview
NameDR405251
Unique NameDR405251
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405251 vs. ExPASy Swiss-Prot
Match: CLPP_SACHY (ATP-dependent Clp protease proteolytic subunit OS=Saccharum hybrid GN=clpP PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.236e-32
Identity = 72/166 (43.37%), Postives = 101/166 (60.84%), Query Frame = 3
Query:  243 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYLYINGPGGDVTPTLAIYXTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLGVRDYIFKELSRKTGQPF 737
            MPIG PKV YR PG+    WVDL+N +YRER +F+GQ I  E +N I   M+YL   D +  ++L+IN PGG +   +AI+ TMQ++   + T C+G A  +A F+L GGE   R A P +RI L  PA A  R +  +   E +EL  VR+ I +  + +TG+PF
Sbjct:    1 MPIGVPKVPYRIPGDEEATWVDLYNVMYRERTLFLGQEIRCEITNHITGLMVYLSIEDGNSDIFLFINSPGGWLISGMAIFDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFLLEVEELHKVREMITRVYALRTGKPF 166          
BLAST of DR405251 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNSC (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain CC9605) GN=clpP2 PE=3 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 4.236e-32
Identity = 68/142 (47.89%), Postives = 97/142 (68.31%), Query Frame = 3
Query:  306 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYLYINGPGGDVTPTLAIYXTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLGVRDYIFKELSRKTGQ 731
            D+++ L RER+IF+G+ +  + +N+I+A ML+L++ D  K +YLYIN PGG V   L I+ TMQ +K  V T CVG A  +  FLL  G KG RS++  SRI +  P G A+GQA DIR +ADE+L +++ + KELS +TGQ
Sbjct:   17 DIYSRLLRERIIFLGEAVTSDSANRIVAQMLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASMGAFLLCAGTKGKRSSLQHSRIMIHQPLGGAQGQASDIRIQADEILFLKERLNKELSDRTGQ 158          
BLAST of DR405251 vs. ExPASy Swiss-Prot
Match: CLPP_RANMC (ATP-dependent Clp protease proteolytic subunit OS=Ranunculus macranthus GN=clpP PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.532e-32
Identity = 71/165 (43.03%), Postives = 104/165 (63.03%), Query Frame = 3
Query:  243 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYLYINGPGGDVTPTLAIYXTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLGVRDYIFKELSRKTGQP 734
            MPIG PKV +R PGE    WVD++  L+RER++F+GQ +D E SNQ++  M+YL   D+++ ++L+IN PGG V P +AIY TMQ +   V T C+G A  +  FLL GGE   R A P +R+ +  PA +    Q  +   EA+ELL +R+ + +   ++TG P
Sbjct:    1 MPIGVPKVPFRIPGEEDAVWVDVYR-LHRERLLFLGQGVDSEISNQLIGLMVYLSLEDETRDLFLFINSPGGWVVPGVAIYDTMQFVPPDVHTICMGLAASMGSFLLVGGEITKRIAFPHARVMIHQPASSFYEAQTGEFVLEAEELLKLRETLTRVYVQRTGNP 164          
BLAST of DR405251 vs. ExPASy Swiss-Prot
Match: CLPP_HORVU (ATP-dependent Clp protease proteolytic subunit OS=Hordeum vulgare GN=clpP PE=3 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 5.532e-32
Identity = 72/166 (43.37%), Postives = 100/166 (60.24%), Query Frame = 3
Query:  243 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYLYINGPGGDVTPTLAIYXTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLGVRDYIFKELSRKTGQPF 737
            MPIG PKV YR PG+    WVDL+N +YRER +F+GQ I  E +N I   M+YL   D    ++L+IN PGG +   +AI+ TMQ++   + T C+G A  +A F+L GGE   R A P +RI L  PA A  R +  +   E +EL  VR+ I +  + +TG+PF
Sbjct:    1 MPIGVPKVPYRIPGDEEATWVDLYNVMYRERTLFLGQEIRCEITNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIFDTMQTVTPDIYTICLGIAASMASFILLGGEPAKRIAFPHARIMLHQPASAYYRARTPEFLLEVEELHKVREMITRVYALRTGKPF 166          
BLAST of DR405251 vs. ExPASy Swiss-Prot
Match: CLPP_AGRST (ATP-dependent Clp protease proteolytic subunit OS=Agrostis stolonifera GN=clpP PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.225e-32
Identity = 73/166 (43.98%), Postives = 100/166 (60.24%), Query Frame = 3
Query:  243 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYLYINGPGGDVTPTLAIYXTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLGVRDYIFKELSRKTGQPF 737
            MPIG PKV YR PG+    WVDL+N +YRER +F+GQ I  E +N I   M+YL   D    ++L+IN PGG +   +AI+ TMQ++   + T C+G A  +A F+L GGE   R A P +RI L  PA A  R +  +   E +EL  VR+ I K  + +TG+PF
Sbjct:    1 MPIGVPKVPYRIPGDEEATWVDLYNVMYRERTLFLGQEIRCEITNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIFDTMQTVTPDIYTICLGVAASMASFVLIGGEPTKRIAFPHARIMLHQPASAYYRARTPEFLLEVEELHKVREMITKVYALRTGKPF 166          
BLAST of DR405251 vs. ExPASy Swiss-Prot
Match: CLPP1_PROMP (ATP-dependent Clp protease proteolytic subunit 1 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.225e-32
Identity = 67/148 (45.27%), Postives = 100/148 (67.57%), Query Frame = 3
Query:  288 GSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYLYINGPGGDVTPTLAIYXTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLGVRDYIFKELSRKTGQ 731
            GS +  D+++ L RER+IF+G+ +  + +N+I+A +L+L++ D  K +Y+YIN PGG V   L I+ TMQ +K  + T CVG A  +  FLLA G KG RS++  SRI +  P G ARGQA DIR +ADE+L +++ +  ELS +TG+
Sbjct:   11 GSERVFDIYSRLLRERIIFLGEQVTSDTANRIVAQLLFLEAEDPEKDIYMYINSPGGSVYDGLGIFDTMQHVKPDIHTVCVGLAASMGAFLLAAGTKGKRSSLRHSRIMIHQPLGGARGQASDIRIQADEILYLKERLNTELSERTGK 158          
BLAST of DR405251 vs. ExPASy Swiss-Prot
Match: CLPP_WHEAT (ATP-dependent Clp protease proteolytic subunit OS=Triticum aestivum GN=clpP PE=3 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.232e-31
Identity = 72/166 (43.37%), Postives = 100/166 (60.24%), Query Frame = 3
Query:  243 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYLYINGPGGDVTPTLAIYXTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLGVRDYIFKELSRKTGQPF 737
            MPIG PKV YR PG+    WVDL+N +YRER +F+GQ I  E +N I   M+YL   D    ++L+IN PGG +   +AI+ TMQ++   + T C+G A  +A F+L GGE   R A P +RI L  PA A  R +  +   E +EL  VR+ I +  + +TG+PF
Sbjct:    1 MPIGVPKVPYRIPGDEEATWVDLYNVMYRERTLFLGQEIRCEITNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIFDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFLLEVEELHKVREMITRVYAVRTGKPF 166          
BLAST of DR405251 vs. ExPASy Swiss-Prot
Match: CLPP_ORYSJ (ATP-dependent Clp protease proteolytic subunit OS=Oryza sativa subsp. japonica GN=clpP PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.232e-31
Identity = 72/166 (43.37%), Postives = 100/166 (60.24%), Query Frame = 3
Query:  243 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYLYINGPGGDVTPTLAIYXTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLGVRDYIFKELSRKTGQPF 737
            MPIG PKV YR PG+    WVDL+N +YRER +F+GQ I  E +N I   M+YL   D    ++L+IN PGG +   +AI+ TMQ++   + T C+G A  +A F+L GGE   R A P +RI L  PA A  R +  +   E +EL  VR+ I +  + +TG+PF
Sbjct:    1 MPIGVPKVPYRIPGDEEATWVDLYNVMYRERTLFLGQEIRCEVTNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIFDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFLLEVEELHKVREMITRVYALRTGKPF 166          
BLAST of DR405251 vs. ExPASy Swiss-Prot
Match: CLPP_ORYSI (ATP-dependent Clp protease proteolytic subunit OS=Oryza sativa subsp. indica GN=clpP PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.232e-31
Identity = 72/166 (43.37%), Postives = 100/166 (60.24%), Query Frame = 3
Query:  243 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYLYINGPGGDVTPTLAIYXTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLGVRDYIFKELSRKTGQPF 737
            MPIG PKV YR PG+    WVDL+N +YRER +F+GQ I  E +N I   M+YL   D    ++L+IN PGG +   +AI+ TMQ++   + T C+G A  +A F+L GGE   R A P +RI L  PA A  R +  +   E +EL  VR+ I +  + +TG+PF
Sbjct:    1 MPIGVPKVPYRIPGDEEATWVDLYNVMYRERTLFLGQEIRCEVTNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIFDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFLLEVEELHKVREMITRVYALRTGKPF 166          
BLAST of DR405251 vs. ExPASy Swiss-Prot
Match: CLPP_ORYSA (ATP-dependent Clp protease proteolytic subunit OS=Oryza sativa GN=clpP PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.232e-31
Identity = 72/166 (43.37%), Postives = 100/166 (60.24%), Query Frame = 3
Query:  243 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYLYINGPGGDVTPTLAIYXTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLGVRDYIFKELSRKTGQPF 737
            MPIG PKV YR PG+    WVDL+N +YRER +F+GQ I  E +N I   M+YL   D    ++L+IN PGG +   +AI+ TMQ++   + T C+G A  +A F+L GGE   R A P +RI L  PA A  R +  +   E +EL  VR+ I +  + +TG+PF
Sbjct:    1 MPIGVPKVPYRIPGDEEATWVDLYNVMYRERTLFLGQEIRCEVTNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAIFDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFLLEVEELHKVREMITRVYALRTGKPF 166          
The following BLAST results are available for this feature:
BLAST of DR405251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_SACHY4.236e-3243.37ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_SYNSC4.236e-3247.89ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_RANMC5.532e-3243.03ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_HORVU5.532e-3243.37ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_AGRST7.225e-3243.98ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP1_PROMP7.225e-3245.27ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_WHEAT1.232e-3143.37ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ORYSJ1.232e-3143.37ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ORYSI1.232e-3143.37ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ORYSA1.232e-3143.37ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240O01 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240O01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405251 ID=DR405251; Name=DR405251; organism=Citrus sinensis; type=EST; length=738bp
GGGGGACCAAACCAGTTGCAGTTCACTCTCTCGCGCTAAACATGTCCGTT
TCGCTTAACGCAAACTTATATCAACCTTCTCTGAGCTGTAACCTCAAGCT
TTTTTCTGGATTAAAGATTCAATCACCAAGTGTTTTTGGAACTGGGAAAC
CTAATTTGAGTGCTGAATTCTATGGCAGAGTTCATAAGAGCCTCTACTCC
GGCATTCGTAATGATAAACCAATAAGGGGACGAATTGCAATGATGCCGAT
TGGGACACCAAAAGTGCTTTATAGGACGCCTGGTGAGGGATCTTGGCAAT
GGGTTGATCTATGGAATGCCCTATATCGAGAACGTGTTATTTTCATTGGG
CAAAATATAGATGAAGAATTTAGCAACCAAATATTGGCAACGATGTTGTA
TCTAGACAGTGTTGATGATTCCAAAAGGGTTTATTTGTACATCAATGGTC
CCGGTGGGGATGTTACTCCCACCTTGGCAATTTACGNNACTATGCAGAGC
TTGAAGAGTCCTGTTGGCACTCACTGTGTGGGCTTTGCCTATCATTTAGC
AGGGTTTCTTCTAGCAGGTGGAGAAAAGGGTAATCGGTCTGCAATGCCTC
TTTCGAGAATTGCTTTAGACTCTCCAGCTGGTGCAGCTCGTGGTCAGGCT
GATGACATTCGTAATGAAGCAGATGAGCTTCTTGGAGTCAGAGATTACAT
TTTCAAGGAGTTGTCTAGGAAAACAGGTCAGCCCTTTG
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