DR405251

Overview
NameDR405251
Unique NameDR405251
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405251 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNPX (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain WH8102) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.535e-33
Identity = 69/143 (48.25%), Postives = 98/143 (68.53%), Query Frame = 3
Query:  306 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYLYINGPGGDVTPTLAIYXTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLGVRDYIFKELSRKTGQP 734
            D+++ L RER+IF+G+ +  + +N+I+A ML+L++ D  K +YLYIN PGG V   L I+ TMQ +K  V T CVG A  +  FLL  G KG RS++  SRI +  P G ARGQA DIR +ADE+L +++ + +ELS +TGQP
Sbjct:   17 DIYSRLLRERIIFLGEAVTSDSANRIVAQMLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHIKPDVHTVCVGLAASMGAFLLCAGTKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILYLKERLNQELSDRTGQP 159          
BLAST of DR405251 vs. ExPASy Swiss-Prot
Match: CLPP_PIPCE (ATP-dependent Clp protease proteolytic subunit OS=Piper cenocladum GN=clpP PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.535e-33
Identity = 71/165 (43.03%), Postives = 103/165 (62.42%), Query Frame = 3
Query:  243 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYLYINGPGGDVTPTLAIYXTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLGVRDYIFKELSRKTGQP 734
            MPIG PKV +R+PGE    WVD++N L+RER++F+GQ +D E SNQI+  M+YL   D ++ +YL+IN PGG V P +AIY TMQ +   V T C+G A  +  F+L GGE   R A P + + +  PA +       +   EA+ELL +R+ + +   ++TG P
Sbjct:    1 MPIGVPKVPFRSPGEEDAAWVDVYNRLHRERLLFLGQEVDSEISNQIVGLMVYLSIEDGTRDLYLFINSPGGWVIPGIAIYDTMQFVSPDVHTICMGLAASMGSFILVGGEITKRLAFPHAWVMIHQPASSFYEAPTGEFILEAEELLKLRETLTRVYVQRTGNP 165          
BLAST of DR405251 vs. ExPASy Swiss-Prot
Match: CLPP_PINTH (ATP-dependent Clp protease proteolytic subunit OS=Pinus thunbergii GN=clpP PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.535e-33
Identity = 68/165 (41.21%), Postives = 103/165 (62.42%), Query Frame = 3
Query:  243 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYLYINGPGGDVTPTLAIYXTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLGVRDYIFKELSRKTGQP 734
            MP+G PKV +R PG+    WVDL+N LYRER++F+ Q+I+ E +NQ++  M+YL + D +K ++ +IN PGG V P + ++  MQ++   V T C+G A  +  F+L GGE   R A+P +RI +  PA +   G A D  NE+  +  +RDYI +    +T QP
Sbjct:    1 MPVGVPKVPFRAPGDEDATWVDLYNRLYRERLLFLAQDINHEIANQLMGLMVYLSAEDSNKDIFSFINCPGGSVIPGVGLFDMMQAIVPDVHTICMGVAASMGSFILIGGEMPKRIALPHARIMIHQPASSYYDGSAADFHNESKHVTMLRDYITRCYIERTDQP 165          
BLAST of DR405251 vs. ExPASy Swiss-Prot
Match: CLPP_DIOEL (ATP-dependent Clp protease proteolytic subunit OS=Dioscorea elephantipes GN=clpP PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.115e-32
Identity = 74/165 (44.85%), Postives = 104/165 (63.03%), Query Frame = 3
Query:  243 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYLYINGPGGDVTPTLAIYXTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLGVRDYIFKELSRKTGQP 734
            MPIG PKV +R+PGE    WVD+ N L+RER++F+GQ +D E SNQ++  M+YL   D +K +YL+IN PGG V P +AIY TMQ +   V T C+G A  +   +L GGE   R A P +R+ +  PA +    QA +   EA+ELL +R+ + K   ++TG P
Sbjct:    1 MPIGVPKVPFRSPGEEDAVWVDV-NRLHRERLLFLGQEVDNEVSNQLVGLMVYLSIEDATKDLYLFINSPGGWVIPGMAIYDTMQFVSPDVHTICMGLAASMGSLILVGGEITKRLAFPHARVMIHQPASSFYEAQAGEFILEAEELLKLRETLTKVYVQRTGNP 164          
BLAST of DR405251 vs. ExPASy Swiss-Prot
Match: CLPP1_PROMT (ATP-dependent Clp protease proteolytic subunit 1 OS=Prochlorococcus marinus (strain NATL2A) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.456e-32
Identity = 67/143 (46.85%), Postives = 98/143 (68.53%), Query Frame = 3
Query:  306 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYLYINGPGGDVTPTLAIYXTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLGVRDYIFKELSRKTGQP 734
            D+++ L RER++F+G+ +  + +N+I+A +L+L++ D  K ++LYIN PGG V   L I+ TMQ +K  + T CVG A  +  FLL  G KG RS++  SRI +  P G ARGQA DIR +ADE+L ++D + KELS +TGQP
Sbjct:   17 DIYSRLLRERIVFLGEPVTSDSANRIVAQLLFLEADDPDKDIFLYINSPGGSVYDGLGIFDTMQHVKPDIHTVCVGLAASMGAFLLCAGAKGKRSSLLHSRIMIHQPLGGARGQASDIRIQADEILFIKDKLNKELSDRTGQP 159          
BLAST of DR405251 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNS9 (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain CC9902) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.901e-32
Identity = 69/143 (48.25%), Postives = 96/143 (67.13%), Query Frame = 3
Query:  306 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYLYINGPGGDVTPTLAIYXTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLGVRDYIFKELSRKTGQP 734
            D+++ L RER+IF+G+ +  + +N+I+A ML+L++ D  K +YLYIN PGG V   L I+ TMQ +K  V T CVG A  +  FLL  G KG RS++  SRI +  P G A GQA DIR +ADE+L ++D +  ELS +TGQP
Sbjct:   17 DIYSRLLRERIIFLGEAVTSDSANRIVAQMLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHIKPDVQTVCVGLAASMGAFLLCAGTKGKRSSLQHSRIMIHQPLGGASGQASDIRIQADEILYLKDRLNTELSDRTGQP 159          
BLAST of DR405251 vs. ExPASy Swiss-Prot
Match: CLPP1_PROM9 (ATP-dependent Clp protease proteolytic subunit 1 OS=Prochlorococcus marinus (strain MIT 9312) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.901e-32
Identity = 68/150 (45.33%), Postives = 101/150 (67.33%), Query Frame = 3
Query:  288 GSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYLYINGPGGDVTPTLAIYXTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLGVRDYIFKELSRKTGQPF 737
            GS +  D+++ L RER+IF+G+ +  E +N+I+A +L+L++ D  K +Y+YIN PGG V   L I+ TMQ +K  + T CVG A  +  FLLA G KG RS++  SRI +  P G ARGQA DIR +ADE+L +++ +  ELS +TG+ +
Sbjct:   11 GSERVFDIYSRLLRERIIFLGEQVTSETANRIVAQLLFLEAEDPDKDIYMYINSPGGSVYDGLGIFDTMQHVKPDIHTVCVGLAASMGAFLLAAGTKGKRSSLRHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGKDY 160          
BLAST of DR405251 vs. ExPASy Swiss-Prot
Match: CLPP_SORBI (ATP-dependent Clp protease proteolytic subunit OS=Sorghum bicolor GN=clpP PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.236e-32
Identity = 72/166 (43.37%), Postives = 101/166 (60.84%), Query Frame = 3
Query:  243 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYLYINGPGGDVTPTLAIYXTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLGVRDYIFKELSRKTGQPF 737
            MPIG PKV YR PG+    WVDL+N +YRER +F+GQ I  E +N I   M+YL   D +  ++L+IN PGG +   +AI+ TMQ++   + T C+G A  +A F+L GGE   R A P +RI L  PA A  R +  +   E +EL  VR+ I +  + +TG+PF
Sbjct:    1 MPIGVPKVPYRIPGDEEATWVDLYNVMYRERTLFLGQEIRCEITNHITGLMVYLSIEDGNSDIFLFINSPGGWLISGMAIFDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFLLEVEELHKVREMITRVYALRTGKPF 166          
BLAST of DR405251 vs. ExPASy Swiss-Prot
Match: CLPP_SHEAM (ATP-dependent Clp protease proteolytic subunit OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=clpP PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.236e-32
Identity = 73/160 (45.62%), Postives = 103/160 (64.38%), Query Frame = 3
Query:  258 PKVLYRTP-GEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYLYINGPGGDVTPTLAIYXTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLGVRDYIFKELSRKTGQP 734
            P V+ +T  GE S+   D+++ L +ERVIF+   ++E  +N I+A +L+L+S +  K +YLYIN PGG VT  +AIY TMQ +K  V T C+G A  +  FLLAGGEKG R  +P SR+ +  P G  +GQA DI   A E+LG++  + + LS  TGQP
Sbjct:   14 PMVVEQTAKGERSY---DIYSRLLKERVIFLVGQVEEHMANLIVAQLLFLESENPDKEIYLYINSPGGSVTAGMAIYDTMQFIKPKVSTVCIGQACSMGAFLLAGGEKGMRHCLPNSRVMIHQPLGGFQGQASDIAIHAQEILGIKHKLNQMLSHHTGQP 170          
BLAST of DR405251 vs. ExPASy Swiss-Prot
Match: CLPP_SACOF (ATP-dependent Clp protease proteolytic subunit OS=Saccharum officinarum GN=clpP PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.236e-32
Identity = 72/166 (43.37%), Postives = 101/166 (60.84%), Query Frame = 3
Query:  243 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYLYINGPGGDVTPTLAIYXTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLGVRDYIFKELSRKTGQPF 737
            MPIG PKV YR PG+    WVDL+N +YRER +F+GQ I  E +N I   M+YL   D +  ++L+IN PGG +   +AI+ TMQ++   + T C+G A  +A F+L GGE   R A P +RI L  PA A  R +  +   E +EL  VR+ I +  + +TG+PF
Sbjct:    1 MPIGVPKVPYRIPGDEEATWVDLYNVMYRERTLFLGQEIRCEITNHITGLMVYLSIEDGNSDIFLFINSPGGWLISGMAIFDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFLLEVEELHKVREMITRVYALRTGKPF 166          
The following BLAST results are available for this feature:
BLAST of DR405251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP2_SYNPX6.535e-3348.25ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_PIPCE8.535e-3343.03ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PINTH8.535e-3341.21ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DIOEL1.115e-3244.85ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP1_PROMT1.456e-3246.85ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP1_SYNS91.901e-3248.25ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP1_PROM91.901e-3245.33ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_SORBI4.236e-3243.37ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SHEAM4.236e-3245.63ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SACOF4.236e-3243.37ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240O01 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240O01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405251 ID=DR405251; Name=DR405251; organism=Citrus sinensis; type=EST; length=738bp
GGGGGACCAAACCAGTTGCAGTTCACTCTCTCGCGCTAAACATGTCCGTT
TCGCTTAACGCAAACTTATATCAACCTTCTCTGAGCTGTAACCTCAAGCT
TTTTTCTGGATTAAAGATTCAATCACCAAGTGTTTTTGGAACTGGGAAAC
CTAATTTGAGTGCTGAATTCTATGGCAGAGTTCATAAGAGCCTCTACTCC
GGCATTCGTAATGATAAACCAATAAGGGGACGAATTGCAATGATGCCGAT
TGGGACACCAAAAGTGCTTTATAGGACGCCTGGTGAGGGATCTTGGCAAT
GGGTTGATCTATGGAATGCCCTATATCGAGAACGTGTTATTTTCATTGGG
CAAAATATAGATGAAGAATTTAGCAACCAAATATTGGCAACGATGTTGTA
TCTAGACAGTGTTGATGATTCCAAAAGGGTTTATTTGTACATCAATGGTC
CCGGTGGGGATGTTACTCCCACCTTGGCAATTTACGNNACTATGCAGAGC
TTGAAGAGTCCTGTTGGCACTCACTGTGTGGGCTTTGCCTATCATTTAGC
AGGGTTTCTTCTAGCAGGTGGAGAAAAGGGTAATCGGTCTGCAATGCCTC
TTTCGAGAATTGCTTTAGACTCTCCAGCTGGTGCAGCTCGTGGTCAGGCT
GATGACATTCGTAATGAAGCAGATGAGCTTCTTGGAGTCAGAGATTACAT
TTTCAAGGAGTTGTCTAGGAAAACAGGTCAGCCCTTTG
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