DR405245 | Citrus Genome Database

Overview


Name	DR405245
Unique Name	DR405245
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	687

Libraries


Library Name	Type
Developing fruit albedo at 165 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DR405245 vs. ExPASy Swiss-Prot
Match: DEST_BOVIN (Destrin OS=Bos taurus GN=DSTN PE=2 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 6.622e-13
Identity = 30/80 (37.50%), Postives = 53/80 (66.25%), Query Frame = 3

Query:  258 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMD 497
            + ++ F   LPE DCRYA+YD  + T E+ +K ++ F  W+P  + +++KM+YA+SKD  +++  GI +E QA  P +++
Sbjct:   66 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLN 144

[Close]

BLAST of DR405245 vs. ExPASy Swiss-Prot
Match: DEST_RAT (Destrin OS=Rattus norvegicus GN=Dstn PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 8.648e-13
Identity = 30/80 (37.50%), Postives = 53/80 (66.25%), Query Frame = 3

Query:  258 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMD 497
            + ++ F   LPE DCRYA+YD  + T E+ +K ++ F  W+P  + +++KM+YA+SKD  +++  GI +E QA  P +++
Sbjct:   66 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPEQAPLKSKMIYASSKDAIKKKFPGIKHEYQANGPEDLN 144

[Close]

BLAST of DR405245 vs. ExPASy Swiss-Prot
Match: DEST_MOUSE (Destrin OS=Mus musculus GN=Dstn PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 8.648e-13
Identity = 30/80 (37.50%), Postives = 53/80 (66.25%), Query Frame = 3

Query:  258 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMD 497
            + ++ F   LPE DCRYA+YD  + T E+ +K ++ F  W+P  + +++KM+YA+SKD  +++  GI +E QA  P +++
Sbjct:   66 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPEQAPLKSKMIYASSKDAIKKKFPGIKHEYQANGPEDLN 144

[Close]

BLAST of DR405245 vs. ExPASy Swiss-Prot
Match: DEST_CHICK (Destrin OS=Gallus gallus GN=DSTN PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 8.648e-13
Identity = 30/80 (37.50%), Postives = 53/80 (66.25%), Query Frame = 3

Query:  258 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMD 497
            + ++ F   LPE DCRYA+YD  + T E+ +K ++ F  W+P  + +++KM+YA+SKD  +++  GI +E QA  P +++
Sbjct:   66 DPFKHFVEMLPEKDCRYALYDASFETKES-KKEELMFFLWAPEQAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLN 144

[Close]

BLAST of DR405245 vs. ExPASy Swiss-Prot
Match: COF1_RAT (Cofilin-1 OS=Rattus norvegicus GN=Cfl1 PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 8.648e-13
Identity = 32/73 (43.84%), Postives = 51/73 (69.86%), Query Frame = 3

Query:  258 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQA 476
            + Y  F   LP+ DCRYA+YD  Y T E+ +K  + FI W+P ++ +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYTTFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQA 137

[Close]

BLAST of DR405245 vs. ExPASy Swiss-Prot
Match: COF1_HUMAN (Cofilin-1 OS=Homo sapiens GN=CFL1 PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 8.648e-13
Identity = 32/73 (43.84%), Postives = 51/73 (69.86%), Query Frame = 3

Query:  258 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQA 476
            + Y  F   LP+ DCRYA+YD  Y T E+ +K  + FI W+P ++ +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQA 137

[Close]

BLAST of DR405245 vs. ExPASy Swiss-Prot
Match: COF1_MOUSE (Cofilin-1 OS=Mus musculus GN=Cfl1 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.129e-12
Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = 3

Query:  258 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQA 476
            + Y  F   LP+ DCRYA+YD  Y T E+ +K  + FI W+P  + +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYTTFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPENAPLKSKMIYASSKDAIKKKLTGIKHELQA 137

[Close]

BLAST of DR405245 vs. ExPASy Swiss-Prot
Match: COF1_SHEEP (Cofilin-1 OS=Ovis aries GN=CFL1 PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.475e-12
Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = 3

Query:  258 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQA 476
            + Y  F   LP+ DCRYA+YD  Y T E+ +K  + FI W+P  + +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137

[Close]

BLAST of DR405245 vs. ExPASy Swiss-Prot
Match: COF1_PIG (Cofilin-1 OS=Sus scrofa GN=CFL1 PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.475e-12
Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = 3

Query:  258 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQA 476
            + Y  F   LP+ DCRYA+YD  Y T E+ +K  + FI W+P  + +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137

[Close]

BLAST of DR405245 vs. ExPASy Swiss-Prot
Match: COF1_MACFA (Cofilin-1 OS=Macaca fascicularis GN=CFL1 PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.475e-12
Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = 3

Query:  258 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQA 476
            + Y  F   LP+ DCRYA+YD  Y T E+ +K  + FI W+P  + +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137

The following BLAST results are available for this feature:

BLAST of DR405245 vs. ExPASy Swiss-Prot

BLAST of DR405245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70


Match Name	E-value	Identity	Description
DEST_BOVIN	6.622e-13	37.50	Destrin OS=Bos taurus GN=DSTN PE=2 SV=3	[more]
DEST_RAT	8.648e-13	37.50	Destrin OS=Rattus norvegicus GN=Dstn PE=1 SV=3	[more]
DEST_MOUSE	8.648e-13	37.50	Destrin OS=Mus musculus GN=Dstn PE=1 SV=3	[more]
DEST_CHICK	8.648e-13	37.50	Destrin OS=Gallus gallus GN=DSTN PE=1 SV=3	[more]
COF1_RAT	8.648e-13	43.84	Cofilin-1 OS=Rattus norvegicus GN=Cfl1 PE=1 SV=3	[more]
COF1_HUMAN	8.648e-13	43.84	Cofilin-1 OS=Homo sapiens GN=CFL1 PE=1 SV=3	[more]
COF1_MOUSE	1.129e-12	43.84	Cofilin-1 OS=Mus musculus GN=Cfl1 PE=1 SV=3	[more]
COF1_SHEEP	1.475e-12	43.84	Cofilin-1 OS=Ovis aries GN=CFL1 PE=2 SV=3	[more]
COF1_PIG	1.475e-12	43.84	Cofilin-1 OS=Sus scrofa GN=CFL1 PE=1 SV=3	[more]
COF1_MACFA	1.475e-12	43.84	Cofilin-1 OS=Macaca fascicularis GN=CFL1 PE=2 SV=3	[more]

Pages

Properties


Property Name	Value
Genbank description	CSAB-PNP1240N15 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240N15 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR405245 ID=DR405245; Name=DR405245; organism=Citrus sinensis; type=EST; length=687bp
AGCCGAGGGGAGCACAATACATTTTCGCTCNNNTTNNNTGTTTATTTACT
TGCTCTGGTGTTCTGCGCTCTGTTGCTGCCGCCGCCATGTCTTTCAGAGG
ACTAAGTCGACCAAATGCCACTTCTGGCATGGGCGTTGCTGATCACAGCA
AAAATGCATTCACGGAATTGCAAAGGAAGAAGGTTCACCGTTATGTGATT
TTTAAGATTGATGAGAAGAAAAAGGAGGTTGTGGTTGAGAAGACTGGTGG
CCCCGCTGAGAGCTACGAGGATTTCGCTGCTGCTTTGCCTGAGAATGATT
GTCGATATGCTGTATATGACTTTGACTATGTGACTTCTGAGAATTGTCAG
AAGAGCAAGATATTCTTCATTGCATGGTCCCCTTCAACCTCTAGAATCCG
TGCCAAGATGCTGTACGCCACATCTAAAGACAGATTTCGACGGGAGCTGG
ATGGTATCCACTATGAGATTCAGGCTACTGATCCTACAGAGATGGATCTT
GAAGAGCTTAGAAACCGTGCAAACTGAAGAGTCTGCAGTTTTGCAGTTTC
TTCCCTCCATGAAAAAAAAATCAGCAAGGGGTTCTGCCAACTGTTGCTCC
TTGCTTCATTAATCTATGTGCAAAAATCTATGCGTAATCTTCGAATAACT
GGCAATGTGGGAAGACTGATTGGGCTGAGGTTATCTT