DR405245

Overview
NameDR405245
Unique NameDR405245
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405245 vs. ExPASy Swiss-Prot
Match: COF1_BOVIN (Cofilin-1 OS=Bos taurus GN=CFL1 PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.475e-12
Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = 3
Query:  258 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQA 476
            + Y  F   LP+ DCRYA+YD  Y T E+ +K  + FI W+P  + +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of DR405245 vs. ExPASy Swiss-Prot
Match: COFI_GIBZE (Cofilin OS=Gibberella zeae GN=COF1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.606e-12
Identity = 41/130 (31.54%), Postives = 69/130 (53.08%), Query Frame = 3
Query:  156 AFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDC-----------RYAVYDFDY-VTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEEL 509
            AF +L+  K ++++++K+               +  +EDF   L                RYAVYDF+Y + S +  ++KI FIAWSP  + I+ KM+YA+SK+  +R L GI  E+QA D  +++ + +
Sbjct:    6 AFNDLKLNKKYKFIVYKLSDDYKEIVIDKAS-ESRDWEDFRETLVNATAKSRTGAVGKGPRYAVYDFEYNLASGDGIRNKITFIAWSPDDAGIQPKMIYASSKEALKRSLTGIATELQANDTDDIEYDSI 134          
BLAST of DR405245 vs. ExPASy Swiss-Prot
Match: COF2_PIG (Cofilin-2 OS=Sus scrofa GN=CFL2 PE=2 SV=4)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 33/88 (37.50%), Postives = 56/88 (63.64%), Query Frame = 3
Query:  258 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 521
            + Y  F   LP NDCRYA+YD  Y T E+ +K  + FI W+P ++ +++KM+YA+SKD  +++  GI +E Q        L+++++R+
Sbjct:   66 DPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147          
BLAST of DR405245 vs. ExPASy Swiss-Prot
Match: COF2_MOUSE (Cofilin-2 OS=Mus musculus GN=Cfl2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 33/88 (37.50%), Postives = 56/88 (63.64%), Query Frame = 3
Query:  258 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 521
            + Y  F   LP NDCRYA+YD  Y T E+ +K  + FI W+P ++ +++KM+YA+SKD  +++  GI +E Q        L+++++R+
Sbjct:   66 DPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147          
BLAST of DR405245 vs. ExPASy Swiss-Prot
Match: COF2_HUMAN (Cofilin-2 OS=Homo sapiens GN=CFL2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 33/88 (37.50%), Postives = 56/88 (63.64%), Query Frame = 3
Query:  258 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 521
            + Y  F   LP NDCRYA+YD  Y T E+ +K  + FI W+P ++ +++KM+YA+SKD  +++  GI +E Q        L+++++R+
Sbjct:   66 DPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147          
BLAST of DR405245 vs. ExPASy Swiss-Prot
Match: COF2_BOVIN (Cofilin-2 OS=Bos taurus GN=CFL2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 33/88 (37.50%), Postives = 56/88 (63.64%), Query Frame = 3
Query:  258 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 521
            + Y  F   LP NDCRYA+YD  Y T E+ +K  + FI W+P ++ +++KM+YA+SKD  +++  GI +E Q        L+++++R+
Sbjct:   66 DPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147          
BLAST of DR405245 vs. ExPASy Swiss-Prot
Match: COF1A_XENLA (Cofilin-1-A OS=Xenopus laevis GN=cfl1-A PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 31/72 (43.06%), Postives = 47/72 (65.28%), Query Frame = 3
Query:  258 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQ 473
            + Y+ F   LP NDCRYA+YD  Y T E  +K  + F+ W+P  + +++KM+YA+SKD  ++ L GI +E Q
Sbjct:   66 DPYKTFVKMLPRNDCRYALYDALYETKET-KKEDLVFVFWAPEEASLKSKMIYASSKDAIKKRLPGIKHEWQ 136          
BLAST of DR405245 vs. ExPASy Swiss-Prot
Match: COF2_CHICK (Cofilin-2 OS=Gallus gallus GN=CFL2 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.631e-11
Identity = 33/88 (37.50%), Postives = 56/88 (63.64%), Query Frame = 3
Query:  258 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELRNRA 521
            + Y  F   LP NDCRYA+YD  Y T E+ +K  + FI W+P ++ +++KM+YA+SKD  +++  GI +E Q        L+++++R+
Sbjct:   66 DPYTAFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147          
BLAST of DR405245 vs. ExPASy Swiss-Prot
Match: COF1B_XENLA (Cofilin-1-B OS=Xenopus laevis GN=cfl1-B PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.631e-11
Identity = 31/72 (43.06%), Postives = 46/72 (63.89%), Query Frame = 3
Query:  258 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQ 473
            + Y+ F   LP NDCRYA+YD  Y T E  +K  + F+ W+P  + +++KM+YA+SKD  R+   GI +E Q
Sbjct:   66 DPYKTFVKMLPRNDCRYALYDALYETKET-KKEDLVFVFWAPEEASLKSKMIYASSKDAIRKRFTGIKHEWQ 136          
BLAST of DR405245 vs. ExPASy Swiss-Prot
Match: COF1_XENTR (Cofilin-1 OS=Xenopus tropicalis GN=cfl1 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 30/72 (41.67%), Postives = 46/72 (63.89%), Query Frame = 3
Query:  258 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQ 473
            + Y+ F   LP NDCRYA+YD  Y T E  +K  + F+ W+P  + +++KM+YA+SKD  ++   GI +E Q
Sbjct:   66 DPYKAFVKMLPRNDCRYALYDALYETKET-KKEDLVFVFWAPEEASLKSKMIYASSKDAIKKRFPGIKHEWQ 136          
The following BLAST results are available for this feature:
BLAST of DR405245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
COF1_BOVIN1.475e-1243.84Cofilin-1 OS=Bos taurus GN=CFL1 PE=2 SV=3[more]
COFI_GIBZE5.606e-1231.54Cofilin OS=Gibberella zeae GN=COF1 PE=3 SV=1[more]
COF2_PIG9.562e-1237.50Cofilin-2 OS=Sus scrofa GN=CFL2 PE=2 SV=4[more]
COF2_MOUSE9.562e-1237.50Cofilin-2 OS=Mus musculus GN=Cfl2 PE=1 SV=1[more]
COF2_HUMAN9.562e-1237.50Cofilin-2 OS=Homo sapiens GN=CFL2 PE=1 SV=1[more]
COF2_BOVIN9.562e-1237.50Cofilin-2 OS=Bos taurus GN=CFL2 PE=2 SV=1[more]
COF1A_XENLA1.249e-1143.06Cofilin-1-A OS=Xenopus laevis GN=cfl1-A PE=1 SV=3[more]
COF2_CHICK1.631e-1137.50Cofilin-2 OS=Gallus gallus GN=CFL2 PE=1 SV=2[more]
COF1B_XENLA1.631e-1143.06Cofilin-1-B OS=Xenopus laevis GN=cfl1-B PE=1 SV=3[more]
COF1_XENTR4.745e-1141.67Cofilin-1 OS=Xenopus tropicalis GN=cfl1 PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240N15 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240N15 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405245 ID=DR405245; Name=DR405245; organism=Citrus sinensis; type=EST; length=687bp
AGCCGAGGGGAGCACAATACATTTTCGCTCNNNTTNNNTGTTTATTTACT
TGCTCTGGTGTTCTGCGCTCTGTTGCTGCCGCCGCCATGTCTTTCAGAGG
ACTAAGTCGACCAAATGCCACTTCTGGCATGGGCGTTGCTGATCACAGCA
AAAATGCATTCACGGAATTGCAAAGGAAGAAGGTTCACCGTTATGTGATT
TTTAAGATTGATGAGAAGAAAAAGGAGGTTGTGGTTGAGAAGACTGGTGG
CCCCGCTGAGAGCTACGAGGATTTCGCTGCTGCTTTGCCTGAGAATGATT
GTCGATATGCTGTATATGACTTTGACTATGTGACTTCTGAGAATTGTCAG
AAGAGCAAGATATTCTTCATTGCATGGTCCCCTTCAACCTCTAGAATCCG
TGCCAAGATGCTGTACGCCACATCTAAAGACAGATTTCGACGGGAGCTGG
ATGGTATCCACTATGAGATTCAGGCTACTGATCCTACAGAGATGGATCTT
GAAGAGCTTAGAAACCGTGCAAACTGAAGAGTCTGCAGTTTTGCAGTTTC
TTCCCTCCATGAAAAAAAAATCAGCAAGGGGTTCTGCCAACTGTTGCTCC
TTGCTTCATTAATCTATGTGCAAAAATCTATGCGTAATCTTCGAATAACT
GGCAATGTGGGAAGACTGATTGGGCTGAGGTTATCTT
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