DR405239

Overview
NameDR405239
Unique NameDR405239
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405239 vs. ExPASy Swiss-Prot
Match: CYC_SOLLC (Cytochrome c OS=Solanum lycopersicum PE=1 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 2.504e-56
Identity = 102/111 (91.89%), Postives = 107/111 (96.40%), Query Frame = 3
Query:   54 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 386
            ASF+EAPPGN KAGEKIFKTKCAQCHTVEKGAGHK+GPNLNGLFGRQSGTT GYSYSAANKNMAVNW E TLYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLIAYLK++TA
Sbjct:    1 ASFNEAPPGNPKAGEKIFKTKCAQCHTVEKGAGHKEGPNLNGLFGRQSGTTAGYSYSAANKNMAVNWGENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKEATA 111          
BLAST of DR405239 vs. ExPASy Swiss-Prot
Match: CYC_ORYSJ (Cytochrome c OS=Oryza sativa subsp. japonica GN=CC-1 PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.504e-56
Identity = 101/112 (90.18%), Postives = 107/112 (95.54%), Query Frame = 3
Query:   51 MASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 386
            MASF EAPPGN KAGEKIFKTKCAQCHTV+KGAGHKQGPNLNGLFGRQSGTTPGYSYS ANKNMAV WEE TLYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLI+YLK++T+
Sbjct:    1 MASFSEAPPGNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTANKNMAVIWEENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLISYLKEATS 112          
BLAST of DR405239 vs. ExPASy Swiss-Prot
Match: CYC_ORYSI (Cytochrome c OS=Oryza sativa subsp. indica GN=CC-1 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.504e-56
Identity = 101/112 (90.18%), Postives = 107/112 (95.54%), Query Frame = 3
Query:   51 MASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 386
            MASF EAPPGN KAGEKIFKTKCAQCHTV+KGAGHKQGPNLNGLFGRQSGTTPGYSYS ANKNMAV WEE TLYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLI+YLK++T+
Sbjct:    1 MASFSEAPPGNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTANKNMAVIWEENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLISYLKEATS 112          
BLAST of DR405239 vs. ExPASy Swiss-Prot
Match: CYC_CANSA (Cytochrome c OS=Cannabis sativa PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.504e-56
Identity = 97/111 (87.39%), Postives = 108/111 (97.30%), Query Frame = 3
Query:   54 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 386
            ASF++APPG++KAGEKIFKTKCA+CHTV +GAGHKQGPNLNGLFGRQSGTT GYSYSAANKNMAV W++KTLYDYLLNPKKYIPGTKMVFPGLKKP++RADLIAYLK+STA
Sbjct:    1 ASFBZAPPGBSKAGEKIFKTKCAECHTVGRGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNMAVTWZZKTLYDYLLNPKKYIPGTKMVFPGLKKPZBRADLIAYLKESTA 111          
BLAST of DR405239 vs. ExPASy Swiss-Prot
Match: CYC_SESIN (Cytochrome c OS=Sesamum indicum PE=1 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 5.578e-56
Identity = 99/111 (89.19%), Postives = 107/111 (96.40%), Query Frame = 3
Query:   54 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 386
            ASF++APPG+ K+GEKIFKTKCAQCHTV+KGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAV W E TLYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLIAYLK++TA
Sbjct:    1 ASFBZAPPGBVKSGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVIWGENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKEATA 111          
BLAST of DR405239 vs. ExPASy Swiss-Prot
Match: CYC_FRIAG (Cytochrome c OS=Fritillaria agrestis GN=CYTC PE=3 SV=3)

HSP 1 Score: 216.083 bits (549), Expect = 1.243e-55
Identity = 100/112 (89.29%), Postives = 107/112 (95.54%), Query Frame = 3
Query:   51 MASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 386
            MASF EAPPG+ K+GEKIFKTKCAQCHTV+KGAGHKQGPNLNGLFGRQSGTT GYSYSAANKN AVNW+E TLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK++T+
Sbjct:    1 MASFSEAPPGDFKSGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNKAVNWDENTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATS 112          
BLAST of DR405239 vs. ExPASy Swiss-Prot
Match: CYC_ACENE (Cytochrome c OS=Acer negundo PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.243e-55
Identity = 103/111 (92.79%), Postives = 104/111 (93.69%), Query Frame = 3
Query:   54 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 386
            ASF EAPPGN  AGEKIFKTKCAQCHTV+KGAGHKQGPNLNGLFGRQSGTT GYSYSAANKNMAVNW   TLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA
Sbjct:    1 ASFAEAPPGNPAAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNMAVNWGYNTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 111          
BLAST of DR405239 vs. ExPASy Swiss-Prot
Match: CYC_ARUMA (Cytochrome c OS=Arum maculatum PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 4.722e-55
Identity = 102/111 (91.89%), Postives = 104/111 (93.69%), Query Frame = 3
Query:   54 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 386
            ASF EAPPGN KAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTT GYSYSAANKNMAV WEE TLYDYLLNP KYIPGTKMVFPGL KPQ+RADLIAYLK+STA
Sbjct:    1 ASFAEAPPGNPKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNMAVIWEESTLYDYLLNPXKYIPGTKMVFPGLXKPQERADLIAYLKESTA 111          
BLAST of DR405239 vs. ExPASy Swiss-Prot
Match: CYC_ALLPO (Cytochrome c OS=Allium porrum PE=1 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.374e-54
Identity = 97/111 (87.39%), Postives = 104/111 (93.69%), Query Frame = 3
Query:   54 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 386
            A+F +APPG+ KAG+KIFK KCAQCHTVEKGAGHKQGPNLNGLFGRQSGT  GYSYSAANKNMAV W++ TLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK+STA
Sbjct:    1 ATFSZAPPGBZKAGQKIFKLKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTAAGYSYSAANKNMAVVWZZBTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 111          
BLAST of DR405239 vs. ExPASy Swiss-Prot
Match: CYC_SOLTU (Cytochrome c OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.344e-54
Identity = 99/111 (89.19%), Postives = 104/111 (93.69%), Query Frame = 3
Query:   54 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 386
            ASF EAPPGN KAGEKIFKTKCAQCHTV+KGAGHK+GPNLNGLFGRQSGTT GYSYS ANKNMAV W E TLYDYLLNPKKYIPGTKMVFPGLKKPQ+RADLIAYLK++TA
Sbjct:    1 ASFGEAPPGNPKAGEKIFKTKCAQCHTVDKGAGHKEGPNLNGLFGRQSGTTAGYSYSNANKNMAVTWGENTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKEATA 111          
The following BLAST results are available for this feature:
BLAST of DR405239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
CYC_SOLLC2.504e-5691.89Cytochrome c OS=Solanum lycopersicum PE=1 SV=2[more]
CYC_ORYSJ2.504e-5690.18Cytochrome c OS=Oryza sativa subsp. japonica GN=CC... [more]
CYC_ORYSI2.504e-5690.18Cytochrome c OS=Oryza sativa subsp. indica GN=CC-1... [more]
CYC_CANSA2.504e-5687.39Cytochrome c OS=Cannabis sativa PE=1 SV=1[more]
CYC_SESIN5.578e-5689.19Cytochrome c OS=Sesamum indicum PE=1 SV=1[more]
CYC_FRIAG1.243e-5589.29Cytochrome c OS=Fritillaria agrestis GN=CYTC PE=3 ... [more]
CYC_ACENE1.243e-5592.79Cytochrome c OS=Acer negundo PE=1 SV=1[more]
CYC_ARUMA4.722e-5591.89Cytochrome c OS=Arum maculatum PE=1 SV=1[more]
CYC_ALLPO1.374e-5487.39Cytochrome c OS=Allium porrum PE=1 SV=1[more]
CYC_SOLTU2.344e-5489.19Cytochrome c OS=Solanum tuberosum PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240N09 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240N09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405239 ID=DR405239; Name=DR405239; organism=Citrus sinensis; type=EST; length=642bp
GGGGCTCTGCGTCTTCTTTCTCTCTTTGGATCTTTCAAAACACCACAATA
ATGGCGTCGTTTGATGAGGCACCTCCCGGCAATGCAAAGGCCGGAGAGAA
GATCTTCAAGACCAAGTGCGCTCAGTGCCACACCGTCGAGAAAGGCGCCG
GTCACAAACAAGGTCCTAATTTGAACGGATTGTTTGGAAGGCAGTCGGGG
ACTACACCTGGGTACTCATACTCTGCGGCTAACAAGAACATGGCTGTGAA
TTGGGAGGAAAAGACTTTGTATGATTACTTGCTCAACCCTAAGAAGTACA
TTCCTGGAACAAAGATGGTATTCCCTGGATTGAAGAAGCCTCAGGATCGT
GCCGACCTTATTGCATATTTGAAACAATCTACTGCATAAGAACTTGCCGA
TAGTCAGTTTACCTATTCCATTTTGCAGTTGTTGAAGATTGTTTTGCGGT
GCGGATATAGTACTGTTTTTTACCAATAAATTTTAAACATTTAAGGTTCA
GCAATGTTCTTTGTAACTTGAGCATTGCTAATTTGAGAAAAGGTTGCTGT
CATTGGCAAACATAATATTCAATTGAATTTCCTGGTTATAATCATATTTC
ATGAATTTTGGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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