DR405239

Overview
NameDR405239
Unique NameDR405239
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405239 vs. ExPASy Swiss-Prot
Match: CYC_APIME (Cytochrome c OS=Apis mellifera GN=cytC PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 6.412e-36
Identity = 65/104 (62.50%), Postives = 84/104 (80.77%), Query Frame = 3
Query:   72 PPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 383
            P G+ + G+KIF  KCAQCHT+E G  HK GPNL G++GR++G  PGYSY+ ANK   + W ++TL++YL NPKKYIPGTKMVF GLKKPQ+RADLIAY++Q++
Sbjct:    4 PAGDPEKGKKIFVQKCAQCHTIESGGKHKVGPNLYGVYGRKTGQAPGYSYTDANKGKGITWNKETLFEYLENPKKYIPGTKMVFAGLKKPQERADLIAYIEQAS 107          
BLAST of DR405239 vs. ExPASy Swiss-Prot
Match: CYC2_MOUSE (Cytochrome c, testis-specific OS=Mus musculus GN=Cyct PE=1 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 6.412e-36
Identity = 69/103 (66.99%), Postives = 83/103 (80.58%), Query Frame = 3
Query:   78 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 386
            G+A+AG+KIF  KCAQCHTVEKG  HK GPNL GLFGR++G  PG+SY+ ANKN  V W E+TL +YL NPKKYIPGTKM+F G+KK  +R DLI YLKQ+T+
Sbjct:    2 GDAEAGKKIFVQKCAQCHTVEKGGKHKTGPNLWGLFGRKTGQAPGFSYTDANKNKGVIWSEETLMEYLENPKKYIPGTKMIFAGIKKKSEREDLIKYLKQATS 104          
BLAST of DR405239 vs. ExPASy Swiss-Prot
Match: CYC_SAMCY (Cytochrome c OS=Samia cynthia PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 8.374e-36
Identity = 68/104 (65.38%), Postives = 82/104 (78.85%), Query Frame = 3
Query:   72 PPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 383
            P GNA+ G+KIF  +CAQCHTVE G  HK GPNL+G +GR++G  PG+SYS ANK   + W + TL++YL NPKKYIPGTKMVF GLKK  +RADLIAYLK+ST
Sbjct:    4 PAGNAENGKKIFVQRCAQCHTVEAGGKHKVGPNLHGFYGRKTGQAPGFSYSNANKAKGITWGDDTLFEYLENPKKYIPGTKMVFAGLKKANERADLIAYLKEST 107          
BLAST of DR405239 vs. ExPASy Swiss-Prot
Match: CYC_CANFA (Cytochrome c OS=Canis familiaris GN=CYCS PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 8.374e-36
Identity = 67/102 (65.69%), Postives = 83/102 (81.37%), Query Frame = 3
Query:   78 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 383
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G  PG+SY+ ANKN  + W E+TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKTGERADLIAYLKKAT 103          
BLAST of DR405239 vs. ExPASy Swiss-Prot
Match: CYC_MINSC (Cytochrome c OS=Miniopterus schreibersi GN=CYCS PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.094e-35
Identity = 67/102 (65.69%), Postives = 82/102 (80.39%), Query Frame = 3
Query:   78 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 383
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G  PG+SY+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWGEATLMEYLENPKKYIPGTKMIFAGIKKSAERADLIAYLKKAT 103          
BLAST of DR405239 vs. ExPASy Swiss-Prot
Match: CYC_EQUBU (Cytochrome c OS=Equus burchelli GN=CYCS PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.094e-35
Identity = 66/102 (64.71%), Postives = 83/102 (81.37%), Query Frame = 3
Query:   78 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 383
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G  PG+SY+ ANKN  + W+E+TL +YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWKEETLMEYLENPKKYIPGTKMIFAGIKKKTEREDLIAYLKKAT 103          
BLAST of DR405239 vs. ExPASy Swiss-Prot
Match: CYC_EQUAS (Cytochrome c OS=Equus asinus GN=CYCS PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.094e-35
Identity = 66/102 (64.71%), Postives = 83/102 (81.37%), Query Frame = 3
Query:   78 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 383
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G  PG+SY+ ANKN  + W+E+TL +YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWKEETLMEYLENPKKYIPGTKMIFAGIKKKTEREDLIAYLKKAT 103          
BLAST of DR405239 vs. ExPASy Swiss-Prot
Match: CYC_ALLMI (Cytochrome c OS=Alligator mississippiensis PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.428e-35
Identity = 66/103 (64.08%), Postives = 83/103 (80.58%), Query Frame = 3
Query:   78 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 386
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GL GR++G  PG+SY+ ANKN  + W E+TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T+
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLIGRKTGQAPGFSYTEANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKPERADLIAYLKEATS 104          
BLAST of DR405239 vs. ExPASy Swiss-Prot
Match: CYC_MANSE (Cytochrome c OS=Manduca sexta PE=1 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 1.866e-35
Identity = 67/104 (64.42%), Postives = 81/104 (77.88%), Query Frame = 3
Query:   72 PPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 383
            P G+ + G+K+F  +CAQCHTVE G  HK GPNL+G FGR++G  PG+SYS ANK   + W E TL++YL NPKKYIPGTKMVF GLKK  +RADLIAYLKQ+T
Sbjct:    4 PAGDVEKGKKLFVQRCAQCHTVEAGGKHKIGPNLHGFFGRKTGQAPGFSYSDANKAKGITWNEDTLFEYLENPKKYIPGTKMVFAGLKKANERADLIAYLKQAT 107          
BLAST of DR405239 vs. ExPASy Swiss-Prot
Match: CYC_SARPE (Cytochrome c OS=Sarcophaga peregrina PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.437e-35
Identity = 65/104 (62.50%), Postives = 81/104 (77.88%), Query Frame = 3
Query:   72 PPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 383
            P G+ + G+KIF  +CAQCHTVE G  HK GPNL+GLFGR++G  PG++Y+ ANK   + W E TL++YL NPKKYIPGTKM+F GLKKP +R DLIAYLK +T
Sbjct:    4 PAGDVEKGKKIFVQRCAQCHTVEAGGKHKVGPNLHGLFGRKTGQAPGFAYTDANKAKGITWNEDTLFEYLENPKKYIPGTKMIFAGLKKPNERGDLIAYLKSAT 107          
The following BLAST results are available for this feature:
BLAST of DR405239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
CYC_APIME6.412e-3662.50Cytochrome c OS=Apis mellifera GN=cytC PE=1 SV=2[more]
CYC2_MOUSE6.412e-3666.99Cytochrome c, testis-specific OS=Mus musculus GN=C... [more]
CYC_SAMCY8.374e-3665.38Cytochrome c OS=Samia cynthia PE=1 SV=2[more]
CYC_CANFA8.374e-3665.69Cytochrome c OS=Canis familiaris GN=CYCS PE=1 SV=2[more]
CYC_MINSC1.094e-3565.69Cytochrome c OS=Miniopterus schreibersi GN=CYCS PE... [more]
CYC_EQUBU1.094e-3564.71Cytochrome c OS=Equus burchelli GN=CYCS PE=1 SV=2[more]
CYC_EQUAS1.094e-3564.71Cytochrome c OS=Equus asinus GN=CYCS PE=1 SV=2[more]
CYC_ALLMI1.428e-3564.08Cytochrome c OS=Alligator mississippiensis PE=1 SV... [more]
CYC_MANSE1.866e-3564.42Cytochrome c OS=Manduca sexta PE=1 SV=2[more]
CYC_SARPE2.437e-3562.50Cytochrome c OS=Sarcophaga peregrina PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240N09 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240N09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405239 ID=DR405239; Name=DR405239; organism=Citrus sinensis; type=EST; length=642bp
GGGGCTCTGCGTCTTCTTTCTCTCTTTGGATCTTTCAAAACACCACAATA
ATGGCGTCGTTTGATGAGGCACCTCCCGGCAATGCAAAGGCCGGAGAGAA
GATCTTCAAGACCAAGTGCGCTCAGTGCCACACCGTCGAGAAAGGCGCCG
GTCACAAACAAGGTCCTAATTTGAACGGATTGTTTGGAAGGCAGTCGGGG
ACTACACCTGGGTACTCATACTCTGCGGCTAACAAGAACATGGCTGTGAA
TTGGGAGGAAAAGACTTTGTATGATTACTTGCTCAACCCTAAGAAGTACA
TTCCTGGAACAAAGATGGTATTCCCTGGATTGAAGAAGCCTCAGGATCGT
GCCGACCTTATTGCATATTTGAAACAATCTACTGCATAAGAACTTGCCGA
TAGTCAGTTTACCTATTCCATTTTGCAGTTGTTGAAGATTGTTTTGCGGT
GCGGATATAGTACTGTTTTTTACCAATAAATTTTAAACATTTAAGGTTCA
GCAATGTTCTTTGTAACTTGAGCATTGCTAATTTGAGAAAAGGTTGCTGT
CATTGGCAAACATAATATTCAATTGAATTTCCTGGTTATAATCATATTTC
ATGAATTTTGGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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