DR405226

Overview
NameDR405226
Unique NameDR405226
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405226 vs. ExPASy Swiss-Prot
Match: UB2E3_HUMAN (Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens GN=UBE2E3 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.808e-24
Identity = 53/121 (43.80%), Postives = 75/121 (61.98%), Query Frame = 3
Query:  321 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMHWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSP 683
            +ST A KR+ ++   +  DPP   S  P+ +NI  W + I GP  + ++GG F L + F+ DYP KPP V F +R++H NI + G ICLDIL++ WSP   ++ +L SI SLL D NP  P
Sbjct:   59 LSTSA-KRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP 178          
BLAST of DR405226 vs. ExPASy Swiss-Prot
Match: UB2E3_BOVIN (Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus GN=UBE2E3 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.808e-24
Identity = 53/121 (43.80%), Postives = 75/121 (61.98%), Query Frame = 3
Query:  321 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMHWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSP 683
            +ST A KR+ ++   +  DPP   S  P+ +NI  W + I GP  + ++GG F L + F+ DYP KPP V F +R++H NI + G ICLDIL++ WSP   ++ +L SI SLL D NP  P
Sbjct:   59 LSTSA-KRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP 178          
BLAST of DR405226 vs. ExPASy Swiss-Prot
Match: UB2E2_MOUSE (Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus GN=Ube2e2 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.973e-24
Identity = 53/121 (43.80%), Postives = 75/121 (61.98%), Query Frame = 3
Query:  321 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMHWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSP 683
            +ST A KR+ ++   +  DPP   S  P+ +NI  W + I GP  + ++GG F L + F+ DYP KPP V F +R++H NI + G ICLDIL++ WSP   ++ +L SI SLL D NP  P
Sbjct:   53 LSTSA-KRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP 172          
BLAST of DR405226 vs. ExPASy Swiss-Prot
Match: UB2E2_HUMAN (Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens GN=UBE2E2 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.973e-24
Identity = 53/121 (43.80%), Postives = 75/121 (61.98%), Query Frame = 3
Query:  321 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMHWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSP 683
            +ST A KR+ ++   +  DPP   S  P+ +NI  W + I GP  + ++GG F L + F+ DYP KPP V F +R++H NI + G ICLDIL++ WSP   ++ +L SI SLL D NP  P
Sbjct:   53 LSTSA-KRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP 172          
BLAST of DR405226 vs. ExPASy Swiss-Prot
Match: UBE2C_MACFA (Ubiquitin-conjugating enzyme E2 C OS=Macaca fascicularis GN=UBE2C PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.495e-24
Identity = 52/121 (42.98%), Postives = 75/121 (61.98%), Query Frame = 3
Query:  330 PARKRLMRDFKRLQQDPPAGISGAPQDNNIMHWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 692
            P  KRL ++   L      GIS  P+ +N+  W   I G   T ++   +KL+L+F   YP   PTV+F++  +HPN+   G+ICLDIL+++WS +YDV  IL SIQSLL +PN +SP N+
Sbjct:   30 PVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNT 150          
BLAST of DR405226 vs. ExPASy Swiss-Prot
Match: UBE2C_BOVIN (Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN=UBE2C PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.495e-24
Identity = 52/121 (42.98%), Postives = 75/121 (61.98%), Query Frame = 3
Query:  330 PARKRLMRDFKRLQQDPPAGISGAPQDNNIMHWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 692
            P  KRL ++   L      GIS  P+ +N+  W   I G   T ++   +KL+L+F   YP   PTV+F++  +HPN+   G+ICLDIL+++WS +YDV  IL SIQSLL +PN +SP N+
Sbjct:   30 PVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNT 150          
BLAST of DR405226 vs. ExPASy Swiss-Prot
Match: UBC7_ARATH (Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis thaliana GN=UBC7 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.495e-24
Identity = 55/137 (40.15%), Postives = 78/137 (56.93%), Query Frame = 3
Query:  321 MSTPARKRLMRDFKRLQQDPPAGIS-GAPQDNNIMHWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPAN 689
            M++ A   L +  K L + P  G S G   + NI  W+  I GP DT ++GG F   + F ++YPN PPTVRF S M+HPN+Y+DG +C+ IL               +W+P++ V +I+ SI S+L  PN  SPAN
Sbjct:    1 MASQASLLLQKQLKDLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFNAIMTFPQNYPNSPPTVRFTSDMWHPNVYSDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPAN 137          
BLAST of DR405226 vs. ExPASy Swiss-Prot
Match: UBC21_ARATH (Probable ubiquitin carrier protein E2 21 OS=Arabidopsis thaliana GN=UBC21 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.495e-24
Identity = 51/122 (41.80%), Postives = 79/122 (64.75%), Query Frame = 3
Query:  333 ARKRLMRDFKRLQQDPPAG--ISGAPQDNNIMHWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPAN 689
            +R RL +++K +Q++  A   I     D NI  W A+I GP +TP++GG F+L     E YP +PP VRF++++FHPN+ +  G ICLDIL+N WSP + + ++  +I +L+  P P+SP N
Sbjct:    4 SRARLFKEYKEVQREKVADPDIQLICDDTNIFKWTALIKGPSETPYEGGVFQLAFSVPEPYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLN 125          
BLAST of DR405226 vs. ExPASy Swiss-Prot
Match: UBE2C_HUMAN (Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens GN=UBE2C PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.483e-24
Identity = 52/121 (42.98%), Postives = 74/121 (61.16%), Query Frame = 3
Query:  330 PARKRLMRDFKRLQQDPPAGISGAPQDNNIMHWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 692
            P  KRL ++   L      GIS  P+ +N+  W   I G   T ++   +KL+L+F   YP   PTV+F++  +HPN+   G+ICLDIL+ +WS +YDV  IL SIQSLL +PN +SP N+
Sbjct:   30 PVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNT 150          
BLAST of DR405226 vs. ExPASy Swiss-Prot
Match: UB2E1_MOUSE (Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus GN=Ube2e1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.483e-24
Identity = 53/121 (43.80%), Postives = 75/121 (61.98%), Query Frame = 3
Query:  321 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMHWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSP 683
            +ST A KR+ ++   +  DPP   S  P+ +NI  W + I GP  + ++GG F L + FT +YP KPP V F +R++H NI + G ICLDIL++ WSP   ++ +L SI SLL D NP  P
Sbjct:   45 LSTSA-KRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADP 164          
The following BLAST results are available for this feature:
BLAST of DR405226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 251
Match NameE-valueIdentityDescription
UB2E3_HUMAN3.808e-2443.80Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens... [more]
UB2E3_BOVIN3.808e-2443.80Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus G... [more]
UB2E2_MOUSE4.973e-2443.80Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus... [more]
UB2E2_HUMAN4.973e-2443.80Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens... [more]
UBE2C_MACFA6.495e-2442.98Ubiquitin-conjugating enzyme E2 C OS=Macaca fascic... [more]
UBE2C_BOVIN6.495e-2442.98Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN... [more]
UBC7_ARATH6.495e-2440.15Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis t... [more]
UBC21_ARATH6.495e-2441.80Probable ubiquitin carrier protein E2 21 OS=Arabid... [more]
UBE2C_HUMAN8.483e-2442.98Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens ... [more]
UB2E1_MOUSE8.483e-2443.80Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240M17 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240M17 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405226 ID=DR405226; Name=DR405226; organism=Citrus sinensis; type=EST; length=692bp
GGGGGACAGAACACAAGAGCAGCAATAAAATATAAAACAGAGTGGGGACG
GGGCTCGACTCAACACACGCAACAGGCCAACCATATCCCAACAATTCACG
TAAAAAAAAGAATTCTGCTTTCTTCTCCGCTGTCTGCAGATTCTCTCTTC
TTTTTTTCTTCTCCACTCGTACTCTCCGTTTTAATCCACTTAGTCTTTTT
CTTCTTTTCTTTCGTTGTATAAATTCAATCAATTCCAACGCTGAAACTTG
AAGCCGCTTAGCTTTCCCTCTTGTTTACCAGTTTCTCGTACCGTCTCCTT
TCAGTTTGTAGGTGGTGACGATGTCGACACCTGCAAGGAAGAGGCTGATG
AGAGATTTTAAAAGGTTGCAGCAAGACCCGCCTGCAGGCATCAGTGGGGC
TCCCCAAGACAACAATATTATGCACTGGAATGCCGTGATATTTGGTCCTG
ATGATACTCCATGGGATGGAGGTACGTTCAAGTTGACCCTTCAGTTTACG
GAGGATTATCCAAACAAACCGCCAACTGTACGATTTGTTTCTAGGATGTT
TCATCCAAATATATATGCCGATGGAAGTATTTGTCTGGATATTTTGCAAA
ATCAGTGGAGTCCTATATATGATGTGGCAGCTATACTCACATCTATTCAG
TCGTTGCTCTGTGATCCCAACCCAAATTCTCCTGCAAATTCA
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