DR405202

Overview
NameDR405202
Unique NameDR405202
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DR405202 vs. ExPASy Swiss-Prot
Match: RR11_TOBAC (30S ribosomal protein S11, chloroplastic OS=Nicotiana tabacum GN=rps11 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.141e-42
Identity = 87/104 (83.65%), Postives = 88/104 (84.62%), Query Frame = 3 
Query:  147 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 458
            KGVIHVQASFNNTIVTVTDVRGRV+SWSSA            PFAAQTAA NAIR V DQGMQRAEVMIKGPGLGRDAALRAIRRSGILL FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTSGFKGTRRGTPFAAQTAAANAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLTFVRDVTPMPHNGC 130
[Close]
BLAST of DR405202 vs. ExPASy Swiss-Prot
Match: RR11_SPIOL (30S ribosomal protein S11, chloroplastic OS=Spinacia oleracea GN=rps11 PE=1 SV=4)

HSP 1 Score: 171.4 bits (433), Expect = 3.141e-42
Identity = 86/104 (82.69%), Postives = 90/104 (86.54%), Query Frame = 3 
Query:  147 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 458
            KGVIHVQASFNNTIVTVTDVRGRV+SW+SA            PFAAQTAAGNAIR V +QGMQRAEVMIKGPGLGRDAALRAIRRSGILL+FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVVSWASAGTCGFRGTKRGTPFAAQTAAGNAIRTVVEQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGC 130
[Close]
BLAST of DR405202 vs. ExPASy Swiss-Prot
Match: RR11_SOLTU (30S ribosomal protein S11, chloroplastic OS=Solanum tuberosum GN=rps11 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.141e-42
Identity = 87/104 (83.65%), Postives = 88/104 (84.62%), Query Frame = 3 
Query:  147 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 458
            KGVIHVQASFNNTIVTVTDVRGRV+SWSSA            PFAAQTAA NAIR V DQGMQRAEVMIKGPGLGRDAALRAIRRSGILL FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTSGFKGTRRGTPFAAQTAAANAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLTFVRDVTPMPHNGC 130
[Close]
BLAST of DR405202 vs. ExPASy Swiss-Prot
Match: RR11_SOLLC (30S ribosomal protein S11, chloroplastic OS=Solanum lycopersicum GN=rps11 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.141e-42
Identity = 87/104 (83.65%), Postives = 88/104 (84.62%), Query Frame = 3 
Query:  147 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 458
            KGVIHVQASFNNTIVTVTDVRGRV+SWSSA            PFAAQTAA NAIR V DQGMQRAEVMIKGPGLGRDAALRAIRRSGILL FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTSGFKGTRRGTPFAAQTAAANAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLTFVRDVTPMPHNGC 130
[Close]
BLAST of DR405202 vs. ExPASy Swiss-Prot
Match: RR11_SOLBU (30S ribosomal protein S11, chloroplastic OS=Solanum bulbocastanum GN=rps11 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.141e-42
Identity = 87/104 (83.65%), Postives = 88/104 (84.62%), Query Frame = 3 
Query:  147 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 458
            KGVIHVQASFNNTIVTVTDVRGRV+SWSSA            PFAAQTAA NAIR V DQGMQRAEVMIKGPGLGRDAALRAIRRSGILL FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTSGFKGTRRGTPFAAQTAAANAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLTFVRDVTPMPHNGC 130
[Close]
BLAST of DR405202 vs. ExPASy Swiss-Prot
Match: RR11_NICSY (30S ribosomal protein S11, chloroplastic OS=Nicotiana sylvestris GN=rps11 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.141e-42
Identity = 87/104 (83.65%), Postives = 88/104 (84.62%), Query Frame = 3 
Query:  147 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 458
            KGVIHVQASFNNTIVTVTDVRGRV+SWSSA            PFAAQTAA NAIR V DQGMQRAEVMIKGPGLGRDAALRAIRRSGILL FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTSGFKGTRRGTPFAAQTAAANAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLTFVRDVTPMPHNGC 130
[Close]
BLAST of DR405202 vs. ExPASy Swiss-Prot
Match: RR11_ATRBE (30S ribosomal protein S11, chloroplastic OS=Atropa belladonna GN=rps11 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.141e-42
Identity = 87/104 (83.65%), Postives = 88/104 (84.62%), Query Frame = 3 
Query:  147 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 458
            KGVIHVQASFNNTIVTVTDVRGRV+SWSSA            PFAAQTAA NAIR V DQGMQRAEVMIKGPGLGRDAALRAIRRSGILL FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTSGFKGTRRGTPFAAQTAAANAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLTFVRDVTPMPHNGC 130
[Close]
BLAST of DR405202 vs. ExPASy Swiss-Prot
Match: RR11_CERDE (30S ribosomal protein S11, chloroplastic OS=Ceratophyllum demersum GN=rps11 PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 6.997e-42
Identity = 86/104 (82.69%), Postives = 89/104 (85.58%), Query Frame = 3 
Query:  147 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 458
            KGVIHVQASFNNTIVTVTDVRG+V+SWSSA            PFAAQTAA NAIR V DQGMQRAEVMIKGPGLGRDAALRAIRRSGILL+FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGQVVSWSSAGTCGFRGTRRGTPFAAQTAAANAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGC 130
[Close]
BLAST of DR405202 vs. ExPASy Swiss-Prot
Match: RR11_NICTO (30S ribosomal protein S11, chloroplastic OS=Nicotiana tomentosiformis GN=rps11 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 9.139e-42
Identity = 86/104 (82.69%), Postives = 87/104 (83.65%), Query Frame = 3 
Query:  147 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 458
            KGVIHVQASFNNTIVTVTDVRGRV+SWSSA            PFAAQTA  NAIR V DQGMQRAEVMIKGPGLGRDAALRAIRRSGILL FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTSGFKGTRRGTPFAAQTAVANAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLTFVRDVTPMPHNGC 130
[Close]
BLAST of DR405202 vs. ExPASy Swiss-Prot
Match: RR11_LIRTU (30S ribosomal protein S11, chloroplastic OS=Liriodendron tulipifera GN=rps11 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 9.139e-42
Identity = 86/104 (82.69%), Postives = 89/104 (85.58%), Query Frame = 3 
Query:  147 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 458
            KGVIHVQASFNNTIVTVTDV G+V+SWSSA            PFAAQTAAGNAIR V DQGMQRAEVMIKGPGLGRDAALRAIRRSGILL+FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVLGQVVSWSSAGTCGFRGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGC 130
The following BLAST results are available for this feature:
BLAST of DR405202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR11_TOBAC3.141e-4283.6530S ribosomal protein S11, chloroplastic OS=Nicoti... [more]
RR11_SPIOL3.141e-4282.6930S ribosomal protein S11, chloroplastic OS=Spinac... [more]
RR11_SOLTU3.141e-4283.6530S ribosomal protein S11, chloroplastic OS=Solanu... [more]
RR11_SOLLC3.141e-4283.6530S ribosomal protein S11, chloroplastic OS=Solanu... [more]
RR11_SOLBU3.141e-4283.6530S ribosomal protein S11, chloroplastic OS=Solanu... [more]
RR11_NICSY3.141e-4283.6530S ribosomal protein S11, chloroplastic OS=Nicoti... [more]
RR11_ATRBE3.141e-4283.6530S ribosomal protein S11, chloroplastic OS=Atropa... [more]
RR11_CERDE6.997e-4282.6930S ribosomal protein S11, chloroplastic OS=Cerato... [more]
RR11_NICTO9.139e-4282.6930S ribosomal protein S11, chloroplastic OS=Nicoti... [more]
RR11_LIRTU9.139e-4282.6930S ribosomal protein S11, chloroplastic OS=Liriod... [more]

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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240L14 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240L14 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405202 ID=DR405202; Name=DR405202; organism=Citrus sinensis; type=EST; length=607bp
GGGATTGGTTTTGACATGAAATGGATATATCCATATATCTCTGACTTATA
TTTATGAAATGATCAAATATGGCAAAATCTCCACCACGAAGTGGTTCACG
TAGGCCGGGACGGATCGGTTCACGTAAAAGTGGACGTCGAATACCAAAGG
GCGTTATTCATGTTCAAGCAAGTTTCAACAACACCATTGTGACTGTTACA
GATGTCCGGGGTCGGGTAATTTCTTGGTCCTCGGCCGGTACTTGTGGATT
CAGGGGTACAAGAAGAGGTACGCCTTTTGCTGCTCAAACCGCAGCAGGAA
ATGCTATTCGAGCAGTAGCGGATCAAGGTATGCAACGAGCAGAAGTCATG
ATAAAGGGTCCTGGTCTCGGAAGAGATGCGGCATTACGAGCTATTCGTAG
AAGCGGTATCCTTTTAAATTTCGTACGGGATGTAACCCCTATGCCACACA
ATGGTTGCAGACCCCCTAAAAAAAGACGGGTGTAGAAATAAACATTGAAG
AGATTTCAAGAGAAATAAATGACTCAATGATCTGACAAATAATATTACTA
TGGTTCGAGAGAAAGTAAAAGTATCTACTCGGACACTACAGTGGAAGTGT
GTTGAAT
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