DR405196

Overview
NameDR405196
Unique NameDR405196
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DR405196 vs. ExPASy Swiss-Prot
Match: NDK_PSEU2 (Nucleoside diphosphate kinase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=ndk PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.070e-19
Identity = 48/113 (42.48%), Postives = 68/113 (60.18%), Query Frame = 2 
Query:   20 GEIIIRFEKKXFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 358
            GEI  RFEK    +   KL  + +  AE  Y + S++ FFG L+ ++ SGPVV  + EGE  +   R ++GATNP ++A GTIR D A     N +HGSDS  +A +EI+ +F
Sbjct:   21 GEITTRFEKAGLRVVASKLKQLSKAEAEGFYAEHSARGFFGDLVAFMISGPVVVQVLEGENAIALNRELMGATNPKEAAAGTIRADFADSIDANAVHGSDSEAAAAREISYFF 133
[Close]
BLAST of DR405196 vs. ExPASy Swiss-Prot
Match: NDK_PSESM (Nucleoside diphosphate kinase OS=Pseudomonas syringae pv. tomato GN=ndk PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.070e-19
Identity = 48/113 (42.48%), Postives = 68/113 (60.18%), Query Frame = 2 
Query:   20 GEIIIRFEKKXFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 358
            GEI  RFEK    +   KL  + +  AE  Y + S++ FFG L+ ++ SGPVV  + EGE  +   R ++GATNP ++A GTIR D A     N +HGSDS  +A +EI+ +F
Sbjct:   21 GEITTRFEKAGLRVVASKLKQLSKAEAEGFYAEHSARGFFGDLVAFMISGPVVVQVLEGENAIALNRELMGATNPKEAAAGTIRADFADSIDANAVHGSDSEAAAAREISYFF 133
[Close]
BLAST of DR405196 vs. ExPASy Swiss-Prot
Match: NDK_PSEPW (Nucleoside diphosphate kinase OS=Pseudomonas putida (strain W619) GN=ndk PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.070e-19
Identity = 47/113 (41.59%), Postives = 68/113 (60.18%), Query Frame = 2 
Query:   20 GEIIIRFEKKXFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 358
            G+I  RFE+    +   K+  + +  AE  Y + S + FFG L+ ++TSGPVV  + EGE  +   R ++GATNP ++A GTIR D A     N +HGSDS  +A +EIA +F
Sbjct:   21 GKITTRFEEAGLKIVASKIKQLSKAEAEGFYAEHSERGFFGDLVAFMTSGPVVVQVLEGENAIALNRELMGATNPKEAAAGTIRADFAESIDANAVHGSDSEAAAAREIAYFF 133
[Close]
BLAST of DR405196 vs. ExPASy Swiss-Prot
Match: NDK_PSEPK (Nucleoside diphosphate kinase OS=Pseudomonas putida (strain KT2440) GN=ndk PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.070e-19
Identity = 47/113 (41.59%), Postives = 68/113 (60.18%), Query Frame = 2 
Query:   20 GEIIIRFEKKXFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 358
            G+I  RFE+    +   K+  + +  AE  Y + S + FFG L+ ++TSGPVV  + EGE  +   R ++GATNP ++A GTIR D A     N +HGSDS  +A +EIA +F
Sbjct:   21 GKITTRFEEAGLKIVASKMKQLSKAEAEGFYAEHSERGFFGDLVAFMTSGPVVVQVLEGENAIAKNRELMGATNPKEAAAGTIRADFAESIDANAVHGSDSEAAAAREIAYFF 133
[Close]
BLAST of DR405196 vs. ExPASy Swiss-Prot
Match: NDK_PSEP1 (Nucleoside diphosphate kinase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=ndk PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.070e-19
Identity = 47/113 (41.59%), Postives = 68/113 (60.18%), Query Frame = 2 
Query:   20 GEIIIRFEKKXFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 358
            G+I  RFE+    +   K+  + +  AE  Y + S + FFG L+ ++TSGPVV  + EGE  +   R ++GATNP ++A GTIR D A     N +HGSDS  +A +EIA +F
Sbjct:   21 GKITTRFEEAGLKIVASKMKQLSKAEAEGFYAEHSERGFFGDLVAFMTSGPVVVQVLEGENAIAKNRELMGATNPKEAAAGTIRADFAESIDANAVHGSDSEAAAAREIAYFF 133
[Close]
BLAST of DR405196 vs. ExPASy Swiss-Prot
Match: NDK_PSEF5 (Nucleoside diphosphate kinase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=ndk PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.070e-19
Identity = 47/113 (41.59%), Postives = 69/113 (61.06%), Query Frame = 2 
Query:   20 GEIIIRFEKKXFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 358
            G+I+ RFE+    +   K+  + +  AE  Y + S + FFG L+ ++TSGPVV  + EGE  +   R ++GATNP ++A GTIR D A     N +HGSDS  +A +EIA +F
Sbjct:   21 GKIVSRFEEAGLRVVASKMKQLSKAEAEGFYAEHSERGFFGELVAFMTSGPVVVQVLEGENAIVRNRELMGATNPKEAAAGTIRADFAESIDANAVHGSDSEAAAAREIAYFF 133
[Close]
BLAST of DR405196 vs. ExPASy Swiss-Prot
Match: NDK_PSE14 (Nucleoside diphosphate kinase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=ndk PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.070e-19
Identity = 48/113 (42.48%), Postives = 68/113 (60.18%), Query Frame = 2 
Query:   20 GEIIIRFEKKXFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 358
            GEI  RFEK    +   KL  + +  AE  Y + S++ FFG L+ ++ SGPVV  + EGE  +   R ++GATNP ++A GTIR D A     N +HGSDS  +A +EI+ +F
Sbjct:   21 GEITTRFEKAGLRVVASKLKQLSKAEAEGFYAEHSARGFFGDLVAFMISGPVVVQVLEGENAIALNRELMGATNPKEAAAGTIRADFADSIDANAVHGSDSEAAAAREISYFF 133
[Close]
BLAST of DR405196 vs. ExPASy Swiss-Prot
Match: NDK_PROA2 (Nucleoside diphosphate kinase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=ndk PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.070e-19
Identity = 51/118 (43.22%), Postives = 72/118 (61.02%), Query Frame = 2 
Query:    5 KEALSGEIIIRFEKKXFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF 358
            ++ L G +I + E+  F +  +K   +    A + Y   S +PF+G L+E+++SGP V MI E E  V   RT+IGAT+PA++A GTIR   A   G NIIHGSDS E+AQ E   +F
Sbjct:   14 RKQLIGAVIDKIERAGFRVVAMKKTKLTAQTAGEFYAVHSQRPFYGELVEFMSSGPCVPMILEKENAVADFRTLIGATDPAEAAEGTIRNLFADSKGENIIHGSDSAENAQIEAGFFF 131
[Close]
BLAST of DR405196 vs. ExPASy Swiss-Prot
Match: NDK_AGRRK (Nucleoside diphosphate kinase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=ndk PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.070e-19
Identity = 52/123 (42.28%), Postives = 70/123 (56.91%), Query Frame = 2 
Query:    5 KEALSGEIIIRFEKKXFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI 373
            K  L+G I   FE     +   K + + +  AE  Y     +PFFG L++ +TSGP V  + EGEG +   R I+GATNPA +A GTIR   A+  G N +HGSD+ E+A  EIA WF +  I
Sbjct:   16 KRNLTGAITKIFEDNGLRVIASKRVWMSKREAEGFYAVHKERPFFGELVDGMTSGPTVVQVLEGEGAILKNREIMGATNPANAAEGTIRKIHALSIGENSVHGSDAPETAAVEIAYWFSETEI 138
[Close]
BLAST of DR405196 vs. ExPASy Swiss-Prot
Match: NDK_ACIAC (Nucleoside diphosphate kinase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.070e-19
Identity = 44/114 (38.60%), Postives = 69/114 (60.53%), Query Frame = 2 
Query:   20 GEIIIRFEKKXFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP 361
            G+I  RFE     +   ++  + R  AE+ Y     +PFF  L++++ SGPV+  + EGE  +   R ++GAT+P ++APGTIR D A     N +HGSD+ E+AQ E++ +FP
Sbjct:   21 GQIYARFEAAGLKIAAARMAHLSRQEAEQFYAVHKERPFFKDLVDFMISGPVMIQVLEGENAILKNRELMGATDPKKAAPGTIRADFADSIDANAVHGSDAAETAQVEVSFFFP 134
The following BLAST results are available for this feature:
BLAST of DR405196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_PSEU22.070e-1942.48Nucleoside diphosphate kinase OS=Pseudomonas syrin... [more]
NDK_PSESM2.070e-1942.48Nucleoside diphosphate kinase OS=Pseudomonas syrin... [more]
NDK_PSEPW2.070e-1941.59Nucleoside diphosphate kinase OS=Pseudomonas putid... [more]
NDK_PSEPK2.070e-1941.59Nucleoside diphosphate kinase OS=Pseudomonas putid... [more]
NDK_PSEP12.070e-1941.59Nucleoside diphosphate kinase OS=Pseudomonas putid... [more]
NDK_PSEF52.070e-1941.59Nucleoside diphosphate kinase OS=Pseudomonas fluor... [more]
NDK_PSE142.070e-1942.48Nucleoside diphosphate kinase OS=Pseudomonas syrin... [more]
NDK_PROA22.070e-1943.22Nucleoside diphosphate kinase OS=Prosthecochloris ... [more]
NDK_AGRRK2.070e-1942.28Nucleoside diphosphate kinase OS=Agrobacterium rad... [more]
NDK_ACIAC2.070e-1938.60Nucleoside diphosphate kinase OS=Acidovorax avenae... [more]

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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240L07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240L07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405196 ID=DR405196; Name=DR405196; organism=Citrus sinensis; type=EST; length=678bp
GGGCAAAGAGGCCTTGTCTGGTGAAATCATCATCAGATTTGAGAAGAAGG
NNTTCTCCTTGAAGGGTTTGAAGCTTATGACTGTGGACCGCCCTTTTGCT
GAGAAGCACTATGAGGATTTGTCATCGAAGCCTTTCTTTGGTTCTCTGAT
TGAGTACATTACCTCTGGTCCTGTTGTTGCTATGATTTGGGAGGGTGAAG
GTGTTGTTAAGACTGGCCGCACTATTATTGGAGCCACCAACCCTGCGCAG
TCTGCTCCTGGAACCATCCGTGGTGATTTGGCTATCGTGACGGGCAGGAA
TATCATCCATGGAAGTGACTCAGTTGAGAGTGCCCAGAAAGAAATCGCCT
TGTGGTTCCCTGATGGCCCTATTAACTGGCAGAGCAGCCTTCACCCTTGG
ATCTATGAGTAAACTAATGTTTGGTTGAGGAGCCTAATTGTTCCTGCAGT
TAGACTTATCCCTATCCCTATCCCTATTTCCTTATTTATGGTTACTCCTT
GTTGGTGAACTGTTATGAAGCATTGAGTTAAATTGAGACCAATCCTGGTT
ATGTTGGCTGCTTTCATTCTTGTGGTTGCCATATACAATATTTAAGCTTT
TTTGTTGACTGTATTATGANNTGAGTTTGTTAATGGTTAGCACATGATGG
TTGCACTTTTTATGTAAAAAAAAAAAAA
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