DR405133

Overview
NameDR405133
Unique NameDR405133
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RAC2_HUMAN (Ras-related C3 botulinum toxin substrate 2 OS=Homo sapiens GN=RAC2 PE=1 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.303e-59
Identity = 112/171 (65.50%), Postives = 130/171 (76.02%), Query Frame = 1
Query:  148 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 654
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VD   VNLGLWDTAGQEDY+RLRPLSY   DVFL+ FSL+S ASYENV  KW PE+RH+ P  PIILVGTKLDLRDDK  +         PIT  QG  L K I +  Y+ECS+ TQ+ +K VFD AI+
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIR 174          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RAC2_BOVIN (Ras-related C3 botulinum toxin substrate 2 OS=Bos taurus GN=RAC2 PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.303e-59
Identity = 112/171 (65.50%), Postives = 130/171 (76.02%), Query Frame = 1
Query:  148 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 654
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VD   VNLGLWDTAGQEDY+RLRPLSY   DVFL+ FSL+S ASYENV  KW PE+RH+ P  PIILVGTKLDLRDDK  +         PIT  QG  L K I +  Y+ECS+ TQ+ +K VFD AI+
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIR 174          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RAC2_MOUSE (Ras-related C3 botulinum toxin substrate 2 OS=Mus musculus GN=Rac2 PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.314e-59
Identity = 112/171 (65.50%), Postives = 130/171 (76.02%), Query Frame = 1
Query:  148 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 654
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VD   VNLGLWDTAGQEDY+RLRPLSY   DVFL+ FSL+S ASYENV  KW PE+RH+ P  PIILVGTKLDLRDDK  +         PIT  QG  L K I +  Y+ECS+ TQ+ +K VFD AI+
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKDIDSVKYLECSALTQRGLKTVFDEAIR 174          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RAC3_MOUSE (Ras-related C3 botulinum toxin substrate 3 OS=Mus musculus GN=Rac3 PE=1 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 5.634e-59
Identity = 113/172 (65.70%), Postives = 135/172 (78.49%), Query Frame = 1
Query:  148 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK---QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 654
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQEDY+RLRPLSY   DVFL+ FSL+S AS+ENV  KW PE+RH+ P  PI+LVGTKLDLRDDK   + L D   A PIT  QG  + + IG+  Y+ECS+ TQ+ +K VFD AI+
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLA-PITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIR 174          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RAC3_HUMAN (Ras-related C3 botulinum toxin substrate 3 OS=Homo sapiens GN=RAC3 PE=1 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 5.634e-59
Identity = 113/172 (65.70%), Postives = 135/172 (78.49%), Query Frame = 1
Query:  148 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK---QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 654
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQEDY+RLRPLSY   DVFL+ FSL+S AS+ENV  KW PE+RH+ P  PI+LVGTKLDLRDDK   + L D   A PIT  QG  + + IG+  Y+ECS+ TQ+ +K VFD AI+
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLA-PITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIR 174          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RAC1_DROME (Ras-related protein Rac1 OS=Drosophila melanogaster GN=Rac1 PE=1 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 5.634e-59
Identity = 110/171 (64.33%), Postives = 131/171 (76.61%), Query Frame = 1
Query:  148 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 654
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VD   +NLGLWDTAGQEDY+RLRPLSY   DVFL+ FSL++ AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK  +         PIT  QG  + K IGA  Y+ECS+ TQ+ +K VFD AI+
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDAKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKNTIEKLRDKKLAPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIR 174          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RAC2_CAVPO (Ras-related C3 botulinum toxin substrate 2 OS=Cavia porcellus GN=RAC2 PE=2 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 8.135e-58
Identity = 109/171 (63.74%), Postives = 130/171 (76.02%), Query Frame = 1
Query:  148 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 654
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VD   VNLGLWDTAGQEDY+RLRPLSY   DVFL+ FSL+S ASYENV   W P++RH+ P  PIIL+GTKLDLRDDK+ +         PIT  QG  L K I +  Y+ECS+ TQ+ +K VFD AI+
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVHANWYPKVRHHCPSTPIILLGTKLDLRDDKETIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIR 174          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RACA_ENTHI (Rho-related protein racA OS=Entamoeba histolytica GN=RACA PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.037e-57
Identity = 104/171 (60.82%), Postives = 132/171 (77.19%), Query Frame = 1
Query:  148 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 654
            +KCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SA V+VD   +NLGLWDTAGQEDY+RLRPLSY   DVFL+ FS++S  S++NV+ KW PE+ H+ P  P +LVGTKLD+R+DK+ L   +     PITT QGE   K IGA  YIECS+ TQ+N++ VFD A++
Sbjct:    4 VKCVIVGDGAVGKTCLLISYTTNAFPNEYIPTVFDNYSATVMVDSKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSVVSPPSFDNVSSKWQPEVSHHCPKTPCLLVGTKLDMREDKEQLKRLEEKKITPITTEQGEAKCKDIGAVKYIECSALTQKNLRLVFDEAVR 174          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RAC1A_DICDI (Rho-related protein rac1A OS=Dictyostelium discoideum GN=rac1A PE=1 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 6.887e-57
Identity = 109/171 (63.74%), Postives = 131/171 (76.61%), Query Frame = 1
Query:  148 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK--QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 654
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  +NLGLWDTAGQEDY+RLRPLSY   DVFL+ FS+IS +S+ENV  KW PE+ H+AP VPIILVGTKLD+R+DK  Q         PI+  QG    K I A  Y+ECS+ TQ+ +K VFD AI+
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIISPSSFENVNGKWHPEICHHAPNVPIILVGTKLDMREDKETQDRLKEKKLYPISYEQGLAKMKEINAVKYLECSALTQKGLKTVFDEAIR 174          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RAC1B_DICDI (Rho-related protein rac1B OS=Dictyostelium discoideum GN=rac1B PE=1 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 8.994e-57
Identity = 107/171 (62.57%), Postives = 131/171 (76.61%), Query Frame = 1
Query:  148 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK--QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 654
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  +NLGLWDTAGQEDY+RLRPLSY   DVFL+ FS++S AS+ENV  KW PE+ H+AP VPIILVGTKLD+R+D+  Q         P++  QG    K I A  Y+ECS+ TQ+ +K VFD AI+
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIVSPASFENVNGKWHPEICHHAPNVPIILVGTKLDMREDRDTQDRLKEKKLYPVSYEQGLSKMKEINAVKYLECSALTQKGLKTVFDEAIR 174          
The following BLAST results are available for this feature:
BLAST of DR405133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAC2_HUMAN3.303e-5965.50Ras-related C3 botulinum toxin substrate 2 OS=Homo... [more]
RAC2_BOVIN3.303e-5965.50Ras-related C3 botulinum toxin substrate 2 OS=Bos ... [more]
RAC2_MOUSE4.314e-5965.50Ras-related C3 botulinum toxin substrate 2 OS=Mus ... [more]
RAC3_MOUSE5.634e-5965.70Ras-related C3 botulinum toxin substrate 3 OS=Mus ... [more]
RAC3_HUMAN5.634e-5965.70Ras-related C3 botulinum toxin substrate 3 OS=Homo... [more]
RAC1_DROME5.634e-5964.33Ras-related protein Rac1 OS=Drosophila melanogaste... [more]
RAC2_CAVPO8.135e-5863.74Ras-related C3 botulinum toxin substrate 2 OS=Cavi... [more]
RACA_ENTHI4.037e-5760.82Rho-related protein racA OS=Entamoeba histolytica ... [more]
RAC1A_DICDI6.887e-5763.74Rho-related protein rac1A OS=Dictyostelium discoid... [more]
RAC1B_DICDI8.994e-5762.57Rho-related protein rac1B OS=Dictyostelium discoid... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAB-PNP1240H19 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240H19 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405133 ID=DR405133; Name=DR405133; organism=Citrus sinensis; type=EST; length=657bp
GGGGCTCTCTCCTTTGTCTGTCTCTGCTCTTACAAAAATGCCGTACTTGT
TCTGAGTTAGGGTTCTGTAGCTGTAAAAACAAAGAAAGACGAGTAATAAA
GATACTGTCTTAAGTGCACGTGGCGCGAGATGAGTGCATCGAGGTTCATA
AAGTGCGTGACGGTCGGTGACGGCGCCGTCGGCAAGACTTGCATGCTCAT
TTCTTACACCAGCAACACTTTCCCGACGGATTATGTGCCAACAGTATTTG
ACAATTTCAGTGCAAATGTGGTAGTGGATGGAAGCACTGTTAATCTTGGG
TTGTGGGACACTGCAGGCCAGGAAGATTACAATAGACTAAGACCATTGAG
CTACCGCGGGGCAGATGTCTTCTTACTTGCATTCTCTCTCATTAGCAAGG
CCAGCTATGAAAATGTTGCTAAGAAATGGATTCCTGAGTTGAGGCATTAT
GCACCTGGTGTTCCAATAATTCTTGTCGGGACGAAGCTCGATCTTCGGGA
TGATAAGCAGTTCCTTGCAGATCACCCTGGTGCAGTGCCAATTACCACGG
CCCAAGGGGAGGAATTGAGAAAGTTGATAGGTGCTCCTGTTTACATTGAG
TGTAGTTCCAAAACACAACAGAATGTGAAAGCTGTCTTTGATGCGGCCAT
CAAGGTG
back to top