DR405133

Overview
NameDR405133
Unique NameDR405133
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RAC1C_DICDI (Rho-related protein rac1C OS=Dictyostelium discoideum GN=rac1C PE=1 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 1.175e-56
Identity = 108/171 (63.16%), Postives = 132/171 (77.19%), Query Frame = 1
Query:  148 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK--QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 654
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  +NLGLWDTAGQEDY+RLRPLSY   DVFL+ FS+IS +SYENV+ KW PE+ H+AP VPIILVGTK+D+R+DK  Q         P++  QG    K I A  Y+ECS+ TQ+ +K VFD AI+
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIISPSSYENVSGKWGPEVFHHAPNVPIILVGTKMDMREDKETQDRLKEKKLYPVSYEQGLLKMKEINAFKYLECSALTQKGLKTVFDEAIR 174          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RACB_DICDI (Rho-related protein racB OS=Dictyostelium discoideum GN=racB PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.004e-56
Identity = 109/171 (63.74%), Postives = 131/171 (76.61%), Query Frame = 1
Query:  148 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 654
            IK V VGDGAVGKTC+LISYTSN+FPT+YVPTVFDN+SANV+VD  TV+LGLWDTAGQEDY+RLRPLSY   DVFL+ F++IS+ SY NV  KW PE+ H+ P   IILVGTK DLR+DK+ L         P+T  QGE++ K I A  Y+ECS+ TQ+ +K VFD AIK
Sbjct:    4 IKLVVVGDGAVGKTCLLISYTSNSFPTEYVPTVFDNYSANVMVDNKTVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICFAIISQTSYTNVKSKWWPEVTHHCPNCTIILVGTKCDLREDKESLEKLREKHQQPLTFQQGEQMAKEIKAFCYMECSALTQKGLKQVFDEAIK 174          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RECG_ENTHI (Rho-related protein racG OS=Entamoeba histolytica GN=RACG PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.299e-55
Identity = 105/173 (60.69%), Postives = 132/173 (76.30%), Query Frame = 1
Query:  142 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 654
            R +K V VGDGAVGKTCMLISYT+N FP +Y+PTVF+N+++++VVD   +NLGLWDTAGQEDY+RLRPLSY   DVFL+ FS+I+ ASYENV  KW PE+  + P VPIILVGTK+D+RDD + +        VPI   QG+EL K IGA  YIECS+ TQ N+K VF+ A++
Sbjct:    2 RPVKLVIVGDGAVGKTCMLISYTTNAFPNEYIPTVFENYNSSLVVDDVKINLGLWDTAGQEDYDRLRPLSYPSTDVFLVCFSVIAPASYENVEGKWKPEIDQHCPNVPIILVGTKIDIRDDPEQVKRLAEKNIVPIQPPQGDELAKKIGAVKYIECSALTQANLKLVFEEAVR 174          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RAC1_CAEEL (Ras-related protein ced-10 OS=Caenorhabditis elegans GN=ced-10 PE=1 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 1.875e-54
Identity = 103/171 (60.23%), Postives = 128/171 (74.85%), Query Frame = 1
Query:  148 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 654
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  +NLGLWDTAGQEDY+RLRPLSY   DVFL+ F+L + AS+ENV  KW PE+ H+ P  PIILVGTK DLR+D+  +         P++  QG  + K I A  Y+ECS+ TQ+ +K VFD AI+
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGRPINLGLWDTAGQEDYDRLRPLSYPQTDVFLVCFALNNPASFENVRAKWYPEVSHHCPNTPIILVGTKADLREDRDTVERLRERRLQPVSQTQGYVMAKEIKAVKYLECSALTQRGLKQVFDEAIR 174          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RACC_DICDI (Rho-related protein racC OS=Dictyostelium discoideum GN=racC PE=1 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.449e-54
Identity = 103/177 (58.19%), Postives = 127/177 (71.75%), Query Frame = 1
Query:  130 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 654
            MSA+  IK V +GDGAVGKTC+LISY +N FP DY+PTVFDN+  N+      + LGLWDTAGQE+Y++LRPLSY  A+VFL+ FS+ +  S+ENV  KW PE+ H+ P VP ILVGTKLD RDD+  L      G  PITT QG +L + I A  Y+ECS+KT QN+K VFD AIK
Sbjct:    1 MSAAEVIKLVVIGDGAVGKTCLLISYANNRFPEDYIPTVFDNYVVNLTAGDRNIELGLWDTAGQEEYDKLRPLSYANANVFLICFSITNPVSFENVYTKWYPEVMHFCPEVPQILVGTKLDTRDDRGVLDKLQQTGHKPITTEQGNDLARRIKAIKYMECSAKTSQNLKQVFDEAIK 177          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: CDC42_CANAL (Cell division control protein 42 homolog OS=Candida albicans GN=CDC42 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.537e-53
Identity = 102/170 (60.00%), Postives = 126/170 (74.12%), Query Frame = 1
Query:  148 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 651
            IKCV VGDGAVGKTC+LISYT++ FP DYVPTVFDN++  V++      LGL+DTAGQEDY+RLRPLSY   DVFL+ FS+IS AS+ENV +KW PE+ H+ PGVPII+VGT+ DLR+D   L         PIT  QGE+L K + A  Y+ECS+ TQ+ +K VFD AI
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTSKFPADYVPTVFDNYAVTVMIGDEPFTLGLFDTAGQEDYDRLRPLSYPSTDVFLVCFSVISPASFENVKEKWFPEVHHHCPGVPIIIVGTQTDLRNDDVILQRLHRQKLSPITQEQGEKLAKELRAVKYVECSALTQRGLKTVFDEAI 173          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: CDC42_SCHPO (Cell division control protein 42 homolog OS=Schizosaccharomyces pombe GN=cdc42 PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 7.879e-53
Identity = 102/171 (59.65%), Postives = 129/171 (75.44%), Query Frame = 1
Query:  148 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD---KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 651
            IKCV VGDGAVGKTC+LISYT+N FP+DYVPTVFDN++  V++      LGL+DTAGQEDY+RLRPLSY   DVFL+ FS+ S AS+ENV +KW PE+ H+ PGVP ++VGT++DLRDD   +Q LA      P+T  QGE L + +GA  Y+ECS+ TQ+ +K VFD AI
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHHCPGVPCLIVGTQIDLRDDPSVQQKLA-RQHQHPLTHEQGERLARELGAVKYVECSALTQKGLKNVFDEAI 173          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: CDC42_YEAST (Cell division control protein 42 OS=Saccharomyces cerevisiae GN=CDC42 PE=1 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 2.293e-52
Identity = 98/170 (57.65%), Postives = 125/170 (73.53%), Query Frame = 1
Query:  148 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 651
            +KCV VGDGAVGKTC+LISYT+N FP DYVPTVFDN++  V++      LGL+DTAGQEDY+RLRPLSY   DVFL+ FS+IS  S+ENV +KW PE+ H+ PGVP ++VGT++DLRDDK  +         PIT+ QG  L + + A  Y+ECS+ TQ+ +K VFD AI
Sbjct:    4 LKCVVVGDGAVGKTCLLISYTTNQFPADYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQEDYDRLRPLSYPSTDVFLVCFSVISPPSFENVKEKWFPEVHHHCPGVPCLVVGTQIDLRDDKVIIEKLQRQRLRPITSEQGSRLARELKAVKYVECSALTQRGLKNVFDEAI 173          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RHOQ_HUMAN (Rho-related GTP-binding protein RhoQ OS=Homo sapiens GN=RHOQ PE=1 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 8.712e-52
Identity = 96/170 (56.47%), Postives = 130/170 (76.47%), Query Frame = 1
Query:  148 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 651
            +KCV VGDGAVGKTC+L+SY ++ FP +YVPTVFD+++ +V V G    LGL+DTAGQEDY+RLRPLSY   DVFL+ FS+++ AS++NV ++W+PEL+ YAP VP +L+GT++DLRDD + LA  +     PI   QG++L K IGA  Y+ECS+ TQ+ +K VFD AI
Sbjct:   10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAI 179          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RHOQ_RAT (Rho-related GTP-binding protein RhoQ OS=Rattus norvegicus GN=Rhoq PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.138e-51
Identity = 95/170 (55.88%), Postives = 130/170 (76.47%), Query Frame = 1
Query:  148 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 651
            +KCV VGDGAVGKTC+L+SY ++ FP +YVPTVFD+++ +V V G    LGL+DTAGQEDY+RLRPLSY   DVFL+ FS+++ AS++NV ++W+PEL+ YAP VP +L+GT++DLRDD + LA  +     P+   QG++L K IGA  Y+ECS+ TQ+ +K VFD AI
Sbjct:   10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPVCVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAI 179          
The following BLAST results are available for this feature:
BLAST of DR405133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAC1C_DICDI1.175e-5663.16Rho-related protein rac1C OS=Dictyostelium discoid... [more]
RACB_DICDI2.004e-5663.74Rho-related protein racB OS=Dictyostelium discoide... [more]
RECG_ENTHI1.299e-5560.69Rho-related protein racG OS=Entamoeba histolytica ... [more]
RAC1_CAEEL1.875e-5460.23Ras-related protein ced-10 OS=Caenorhabditis elega... [more]
RACC_DICDI2.449e-5458.19Rho-related protein racC OS=Dictyostelium discoide... [more]
CDC42_CANAL3.537e-5360.00Cell division control protein 42 homolog OS=Candid... [more]
CDC42_SCHPO7.879e-5359.65Cell division control protein 42 homolog OS=Schizo... [more]
CDC42_YEAST2.293e-5257.65Cell division control protein 42 OS=Saccharomyces ... [more]
RHOQ_HUMAN8.712e-5256.47Rho-related GTP-binding protein RhoQ OS=Homo sapie... [more]
RHOQ_RAT1.138e-5155.88Rho-related GTP-binding protein RhoQ OS=Rattus nor... [more]

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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240H19 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240H19 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405133 ID=DR405133; Name=DR405133; organism=Citrus sinensis; type=EST; length=657bp
GGGGCTCTCTCCTTTGTCTGTCTCTGCTCTTACAAAAATGCCGTACTTGT
TCTGAGTTAGGGTTCTGTAGCTGTAAAAACAAAGAAAGACGAGTAATAAA
GATACTGTCTTAAGTGCACGTGGCGCGAGATGAGTGCATCGAGGTTCATA
AAGTGCGTGACGGTCGGTGACGGCGCCGTCGGCAAGACTTGCATGCTCAT
TTCTTACACCAGCAACACTTTCCCGACGGATTATGTGCCAACAGTATTTG
ACAATTTCAGTGCAAATGTGGTAGTGGATGGAAGCACTGTTAATCTTGGG
TTGTGGGACACTGCAGGCCAGGAAGATTACAATAGACTAAGACCATTGAG
CTACCGCGGGGCAGATGTCTTCTTACTTGCATTCTCTCTCATTAGCAAGG
CCAGCTATGAAAATGTTGCTAAGAAATGGATTCCTGAGTTGAGGCATTAT
GCACCTGGTGTTCCAATAATTCTTGTCGGGACGAAGCTCGATCTTCGGGA
TGATAAGCAGTTCCTTGCAGATCACCCTGGTGCAGTGCCAATTACCACGG
CCCAAGGGGAGGAATTGAGAAAGTTGATAGGTGCTCCTGTTTACATTGAG
TGTAGTTCCAAAACACAACAGAATGTGAAAGCTGTCTTTGATGCGGCCAT
CAAGGTG
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