DR405133

Overview
NameDR405133
Unique NameDR405133
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RAB5B_HUMAN (Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5B PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.517e-15
Identity = 53/170 (31.18%), Postives = 87/170 (51.18%), Query Frame = 1
Query:  151 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 654
            K V +G+ AVGK+ +++ +    F      T+   F + +V +D +TV   +WDTAGQE Y+ L P+ YRGA   ++ + + ++ ++   AK W+ EL R  +P + I L G K DL + +    +   A     A    L       +++E S+KT  NV  +F A  K
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFAR-AKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAY----ADDNSL-------LFMETSAKTAMNVNDLFLAIAK 179          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RAB3B_RAT (Ras-related protein Rab-3B OS=Rattus norvegicus GN=Rab3b PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 8.517e-15
Identity = 51/169 (30.18%), Postives = 85/169 (50.30%), Query Frame = 1
Query:  151 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 651
            K + +G+ +VGKT  L  Y  +TF   +V TV  +F    V      V L +WDTAGQE Y  +    YRGA  F+L + + ++ S+ N  + W  +++ Y+     +ILVG K D+ +++           I T +G  L + +G   + E S+K   +V+  F+  +
Sbjct:   24 KLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQVILVGNKCDMEEER----------VIPTEKGRLLAEQLGFD-FFEASAKENISVRQAFERLV 180          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RAB18_CAEEL (Ras-related protein Rab-18 OS=Caenorhabditis elegans GN=rab-18 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.517e-15
Identity = 49/172 (28.49%), Postives = 91/172 (52.91%), Query Frame = 1
Query:  148 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPII--LVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 654
            +K + +G+  VGK+ +++ +  + F  +   T+  +F   ++ +DG+ V L +WDTAGQE +  L P  YRGA   +  + + S++S+E +   W+ E+  Y     II  +V  K+D+          P  V +T  +G +  K     ++IE S+KT++ V+  F+  I+
Sbjct:   12 LKILIIGESGVGKSSLMLRFVDDVFDPEQAATIGVDFRVTSMAIDGNRVKLAIWDTAGQERFRTLTPSYYRGAQGVICVYDVTSRSSFEKL-NHWMQEVDTYCTNDNIIKMMVANKIDM----------PNRV-VTREEGLKFAKR-HRTLFIEASAKTKEGVQCTFEELIE 170          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RB18B_DANRE (Ras-related protein Rab-18-B OS=Danio rerio GN=rab18b PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.112e-14
Identity = 46/172 (26.74%), Postives = 92/172 (53.49%), Query Frame = 1
Query:  148 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPII--LVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 654
            +K + +G+  VGK+ +L+ +T +TF  +   T+  +F    + +DG+   L +WDTAGQE +  L P  YRGA   +L + +  + ++  + + W+ EL  Y     ++  LVG K+D +D+++          +   +G +  +   + ++IE S+KT+  V+  F+  ++
Sbjct:    9 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIAIDGNRAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTKRDTFTKL-ENWLNELETYCTRNDLVKMLVGNKID-KDNRE----------VDRNEGLKFARK-HSMLFIEASAKTRDGVQCAFEELVE 167          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RB18A_LYMST (Ras-related protein Rab-18A OS=Lymnaea stagnalis GN=RAB18A PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.112e-14
Identity = 51/172 (29.65%), Postives = 90/172 (52.33%), Query Frame = 1
Query:  148 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPII--LVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 654
            +K + +G+  VGK+ +L+ +T +TF  +   T+  +F    + V+G+   L +WDTAGQE +  L P  YRGA   +L + + SK S+ N    W+ EL  ++    ++  LVG K+D        A+H     +T  +G +  +     ++IE S+KT   V+  F+  ++
Sbjct:   10 LKILIIGESGVGKSSLLLRFTEDTFDPEQAATIGVDFKVKTLTVEGNKTKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVSSKQSF-NKLDAWLNELETFSTKHDMVKMLVGNKID-------RANH----EVTKDEGLKFARK-HHMLFIEASAKTNDGVQCAFEELVE 168          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RAP1B_XENTR (Ras-related protein Rap-1b OS=Xenopus tropicalis GN=rap1b PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.112e-14
Identity = 49/167 (29.34%), Postives = 82/167 (49.10%), Query Frame = 1
Query:  142 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 639
            R  K V +G G VGK+ + + +    F   Y PT+ D++   V VDG    L + DTAG E +  +R L  +    F L +S+ +++++ ++       LR      VP+ILVG K DL D++           +   QG+ L +      ++E S+K++ NV  +F
Sbjct:    2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDER----------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RAP1B_XENLA (Ras-related protein Rap-1b OS=Xenopus laevis GN=rap1b PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.112e-14
Identity = 49/167 (29.34%), Postives = 82/167 (49.10%), Query Frame = 1
Query:  142 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 639
            R  K V +G G VGK+ + + +    F   Y PT+ D++   V VDG    L + DTAG E +  +R L  +    F L +S+ +++++ ++       LR      VP+ILVG K DL D++           +   QG+ L +      ++E S+K++ NV  +F
Sbjct:    2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDER----------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RAB5B_CHICK (Ras-related protein Rab-5B OS=Gallus gallus GN=RAB5B PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.112e-14
Identity = 53/170 (31.18%), Postives = 86/170 (50.59%), Query Frame = 1
Query:  151 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 654
            K V +G+ AVGK+ +++ +    F      T+   F + +V +D +TV   +WDTAGQE Y+ L P+ YRGA   ++ + + ++ ++   AK W+ EL R  +P + I L G K DL   +    +   A     A    L       +++E S+KT  NV  +F A  K
Sbjct:   22 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFAR-AKTWVKELQRQASPSIVIALAGNKADLASKRMVEYEEAQAY----ADDNSL-------LFMETSAKTAMNVNDLFLAIAK 179          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RAB4B_RAT (Ras-related protein Rab-4B OS=Rattus norvegicus GN=Rab4b PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.112e-14
Identity = 54/165 (32.73%), Postives = 83/165 (50.30%), Query Frame = 1
Query:  151 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 639
            K + +G    GK+C+L  +  N F  D   T+   F + VV V G TV L +WDTAGQE +  +    YRGA   LL + + S+ +Y ++A  W+ + R  A P + +IL G K DL  +++             AQ  EL       +++E S+ T +NV+  F
Sbjct:   10 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLA-AWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRF----AQENEL-------MFLETSALTGENVEEAF 162          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RAB4B_MOUSE (Ras-related protein Rab-4B OS=Mus musculus GN=Rab4b PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.112e-14
Identity = 54/165 (32.73%), Postives = 83/165 (50.30%), Query Frame = 1
Query:  151 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 639
            K + +G    GK+C+L  +  N F  D   T+   F + VV V G TV L +WDTAGQE +  +    YRGA   LL + + S+ +Y ++A  W+ + R  A P + +IL G K DL  +++             AQ  EL       +++E S+ T +NV+  F
Sbjct:   10 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLA-AWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRF----AQENEL-------MFLETSALTGENVEEAF 162          
The following BLAST results are available for this feature:
BLAST of DR405133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB5B_HUMAN8.517e-1531.18Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5... [more]
RAB3B_RAT8.517e-1530.18Ras-related protein Rab-3B OS=Rattus norvegicus GN... [more]
RAB18_CAEEL8.517e-1528.49Ras-related protein Rab-18 OS=Caenorhabditis elega... [more]
RB18B_DANRE1.112e-1426.74Ras-related protein Rab-18-B OS=Danio rerio GN=rab... [more]
RB18A_LYMST1.112e-1429.65Ras-related protein Rab-18A OS=Lymnaea stagnalis G... [more]
RAP1B_XENTR1.112e-1429.34Ras-related protein Rap-1b OS=Xenopus tropicalis G... [more]
RAP1B_XENLA1.112e-1429.34Ras-related protein Rap-1b OS=Xenopus laevis GN=ra... [more]
RAB5B_CHICK1.112e-1431.18Ras-related protein Rab-5B OS=Gallus gallus GN=RAB... [more]
RAB4B_RAT1.112e-1432.73Ras-related protein Rab-4B OS=Rattus norvegicus GN... [more]
RAB4B_MOUSE1.112e-1432.73Ras-related protein Rab-4B OS=Mus musculus GN=Rab4... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAB-PNP1240H19 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240H19 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405133 ID=DR405133; Name=DR405133; organism=Citrus sinensis; type=EST; length=657bp
GGGGCTCTCTCCTTTGTCTGTCTCTGCTCTTACAAAAATGCCGTACTTGT
TCTGAGTTAGGGTTCTGTAGCTGTAAAAACAAAGAAAGACGAGTAATAAA
GATACTGTCTTAAGTGCACGTGGCGCGAGATGAGTGCATCGAGGTTCATA
AAGTGCGTGACGGTCGGTGACGGCGCCGTCGGCAAGACTTGCATGCTCAT
TTCTTACACCAGCAACACTTTCCCGACGGATTATGTGCCAACAGTATTTG
ACAATTTCAGTGCAAATGTGGTAGTGGATGGAAGCACTGTTAATCTTGGG
TTGTGGGACACTGCAGGCCAGGAAGATTACAATAGACTAAGACCATTGAG
CTACCGCGGGGCAGATGTCTTCTTACTTGCATTCTCTCTCATTAGCAAGG
CCAGCTATGAAAATGTTGCTAAGAAATGGATTCCTGAGTTGAGGCATTAT
GCACCTGGTGTTCCAATAATTCTTGTCGGGACGAAGCTCGATCTTCGGGA
TGATAAGCAGTTCCTTGCAGATCACCCTGGTGCAGTGCCAATTACCACGG
CCCAAGGGGAGGAATTGAGAAAGTTGATAGGTGCTCCTGTTTACATTGAG
TGTAGTTCCAAAACACAACAGAATGTGAAAGCTGTCTTTGATGCGGCCAT
CAAGGTG
back to top