DR405133

Overview
NameDR405133
Unique NameDR405133
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RAB4B_HUMAN (Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4B PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.112e-14
Identity = 54/165 (32.73%), Postives = 83/165 (50.30%), Query Frame = 1
Query:  151 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 639
            K + +G    GK+C+L  +  N F  D   T+   F + VV V G TV L +WDTAGQE +  +    YRGA   LL + + S+ +Y ++A  W+ + R  A P + +IL G K DL  +++             AQ  EL       +++E S+ T +NV+  F
Sbjct:   10 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLA-AWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRF----AQENEL-------MFLETSALTGENVEEAF 162          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RAB4B_CANFA (Ras-related protein Rab-4B OS=Canis familiaris GN=RAB4B PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.112e-14
Identity = 54/165 (32.73%), Postives = 83/165 (50.30%), Query Frame = 1
Query:  151 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 639
            K + +G    GK+C+L  +  N F  D   T+   F + VV V G TV L +WDTAGQE +  +    YRGA   LL + + S+ +Y ++A  W+ + R  A P + +IL G K DL  +++             AQ  EL       +++E S+ T +NV+  F
Sbjct:   10 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLA-AWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRF----AQENEL-------MFLETSALTGENVEEAF 162          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RAB3B_MOUSE (Ras-related protein Rab-3B OS=Mus musculus GN=Rab3b PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.112e-14
Identity = 50/169 (29.59%), Postives = 85/169 (50.30%), Query Frame = 1
Query:  151 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 651
            K + +G+ +VGKT  L  Y  +TF   +V TV  +F    V      V L +WDTAGQE Y  +    YRGA  F+L + + ++ S+ N  + W  +++ Y+     +ILVG K D+ +++           + T +G  L + +G   + E S+K   +V+  F+  +
Sbjct:   24 KLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQVILVGNKCDMEEER----------VVPTEKGRLLAEQLGFD-FFEASAKENISVRQAFERLV 180          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RAB3B_MESAU (Ras-related protein Rab-3B OS=Mesocricetus auratus GN=RAB3B PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.112e-14
Identity = 50/169 (29.59%), Postives = 85/169 (50.30%), Query Frame = 1
Query:  151 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 651
            K + +G+ +VGKT  L  Y  +TF   +V TV  +F    V      V L +WDTAGQE Y  +    YRGA  F+L + + ++ S+ N  + W  +++ Y+     +ILVG K D+ +++           + T +G  L + +G   + E S+K   +V+  F+  +
Sbjct:   24 KLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQVILVGNKCDMEEER----------VVPTEKGRLLAEQLGFD-FFEASAKENISVRQAFERLV 180          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RAB3B_BOVIN (Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.112e-14
Identity = 50/169 (29.59%), Postives = 85/169 (50.30%), Query Frame = 1
Query:  151 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 651
            K + +G+ +VGKT  L  Y  +TF   +V TV  +F    V      V L +WDTAGQE Y  +    YRGA  F+L + + ++ S+ N  + W  +++ Y+     +ILVG K D+ +++           + T +G  L + +G   + E S+K   +V+  F+  +
Sbjct:   24 KLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQVILVGNKCDMEEER----------VVPTEKGRLLAEQLGFD-FFEASAKENISVRQAFERLV 180          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RAB31_MOUSE (Ras-related protein Rab-31 OS=Mus musculus GN=Rab31 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.112e-14
Identity = 51/170 (30.00%), Postives = 92/170 (54.12%), Query Frame = 1
Query:  136 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGL-WDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 639
            A R +K   +GD  VGK+ ++  +  + F  +  PT+  +F    V  G+ ++  L WDTAGQE ++ L P+ YRG+   ++ + +  + S+  + KKW+ EL+ + P  + + + G K DL D ++        VP+  A  +E  + IGA + +E S+K   N++ +F
Sbjct:    2 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTL-KKWVKELKEHGPENIVMAIAGNKCDLSDIRE--------VPLKDA--KEYAESIGA-IVVETSAKNAINIEELF 159          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RAB30_MOUSE (Ras-related protein Rab-30 OS=Mus musculus GN=Rab30 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.112e-14
Identity = 49/165 (29.70%), Postives = 83/165 (50.30%), Query Frame = 1
Query:  151 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 639
            K V +G+  VGKTC++  +T   FP     T+  +F    V ++G  V L +WDTAGQE +  +    YR A+  +L + +  + S+     +W+ E+  YA   V  +LVG K+DL + ++          ++  + EE  +      Y+E S+K   NV+ +F
Sbjct:   11 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESF-RCLPEWLREIEQYASNKVITVLVGNKIDLAERRE----------VSQQRAEEFSEAQDM-YYLETSAKESDNVEKLF 163          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RAB30_HUMAN (Ras-related protein Rab-30 OS=Homo sapiens GN=RAB30 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.112e-14
Identity = 49/165 (29.70%), Postives = 83/165 (50.30%), Query Frame = 1
Query:  151 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 639
            K V +G+  VGKTC++  +T   FP     T+  +F    V ++G  V L +WDTAGQE +  +    YR A+  +L + +  + S+     +W+ E+  YA   V  +LVG K+DL + ++          ++  + EE  +      Y+E S+K   NV+ +F
Sbjct:   11 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESF-RCLPEWLREIEQYASNKVITVLVGNKIDLAERRE----------VSQQRAEEFSEAQDM-YYLETSAKESDNVEKLF 163          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RAB30_BOVIN (Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.112e-14
Identity = 49/165 (29.70%), Postives = 83/165 (50.30%), Query Frame = 1
Query:  151 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 639
            K V +G+  VGKTC++  +T   FP     T+  +F    V ++G  V L +WDTAGQE +  +    YR A+  +L + +  + S+     +W+ E+  YA   V  +LVG K+DL + ++          ++  + EE  +      Y+E S+K   NV+ +F
Sbjct:   11 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESF-RCLPEWLREIEQYASNKVITVLVGNKIDLAERRE----------VSQQRAEEFSEAQDM-YYLETSAKESDNVEKLF 163          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: YPT10_YEAST (GTP-binding protein YPT10 OS=Saccharomyces cerevisiae GN=YPT10 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.453e-14
Identity = 60/177 (33.90%), Postives = 86/177 (48.59%), Query Frame = 1
Query:  148 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV----DGST---VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKV 657
            IK V +GD +VGKT ++    S  F   +  T+   F    +     D ST   +++ +WDTAGQE Y  L P+ YR A++ L+ F L   +S +  AK W  +L+  A G  +I+VG K DL        +H G V I         +L G P Y+  S+KT  N    FD   K+
Sbjct:    5 IKVVLLGDSSVGKTSIVTRLKSGKFLAKHAATIGAAFITKTIEVPSNDSSTEKRIHMEIWDTAGQERYKSLVPMYYRDANIALIVFELGDVSSLQ-CAKTWFQDLQDRAQGTQVIIVGNKYDL-----VCEEHSGEVTIPA-------ELQGLP-YVAVSAKTGYN----FDTLNKI 163          
The following BLAST results are available for this feature:
BLAST of DR405133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB4B_HUMAN1.112e-1432.73Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4... [more]
RAB4B_CANFA1.112e-1432.73Ras-related protein Rab-4B OS=Canis familiaris GN=... [more]
RAB3B_MOUSE1.112e-1429.59Ras-related protein Rab-3B OS=Mus musculus GN=Rab3... [more]
RAB3B_MESAU1.112e-1429.59Ras-related protein Rab-3B OS=Mesocricetus auratus... [more]
RAB3B_BOVIN1.112e-1429.59Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B ... [more]
RAB31_MOUSE1.112e-1430.00Ras-related protein Rab-31 OS=Mus musculus GN=Rab3... [more]
RAB30_MOUSE1.112e-1429.70Ras-related protein Rab-30 OS=Mus musculus GN=Rab3... [more]
RAB30_HUMAN1.112e-1429.70Ras-related protein Rab-30 OS=Homo sapiens GN=RAB3... [more]
RAB30_BOVIN1.112e-1429.70Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 ... [more]
YPT10_YEAST1.453e-1433.90GTP-binding protein YPT10 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240H19 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240H19 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405133 ID=DR405133; Name=DR405133; organism=Citrus sinensis; type=EST; length=657bp
GGGGCTCTCTCCTTTGTCTGTCTCTGCTCTTACAAAAATGCCGTACTTGT
TCTGAGTTAGGGTTCTGTAGCTGTAAAAACAAAGAAAGACGAGTAATAAA
GATACTGTCTTAAGTGCACGTGGCGCGAGATGAGTGCATCGAGGTTCATA
AAGTGCGTGACGGTCGGTGACGGCGCCGTCGGCAAGACTTGCATGCTCAT
TTCTTACACCAGCAACACTTTCCCGACGGATTATGTGCCAACAGTATTTG
ACAATTTCAGTGCAAATGTGGTAGTGGATGGAAGCACTGTTAATCTTGGG
TTGTGGGACACTGCAGGCCAGGAAGATTACAATAGACTAAGACCATTGAG
CTACCGCGGGGCAGATGTCTTCTTACTTGCATTCTCTCTCATTAGCAAGG
CCAGCTATGAAAATGTTGCTAAGAAATGGATTCCTGAGTTGAGGCATTAT
GCACCTGGTGTTCCAATAATTCTTGTCGGGACGAAGCTCGATCTTCGGGA
TGATAAGCAGTTCCTTGCAGATCACCCTGGTGCAGTGCCAATTACCACGG
CCCAAGGGGAGGAATTGAGAAAGTTGATAGGTGCTCCTGTTTACATTGAG
TGTAGTTCCAAAACACAACAGAATGTGAAAGCTGTCTTTGATGCGGCCAT
CAAGGTG
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