DR405133

Overview
NameDR405133
Unique NameDR405133
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: CDC42_CANFA (Cell division control protein 42 homolog OS=Canis familiaris GN=CDC42 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.146e-50
Identity = 95/170 (55.88%), Postives = 125/170 (73.53%), Query Frame = 1
Query:  148 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 651
            IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVFL+ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD   +         PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAI 173          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: CDC42_BOVIN (Cell division control protein 42 homolog OS=Bos taurus GN=CDC42 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.146e-50
Identity = 95/170 (55.88%), Postives = 125/170 (73.53%), Query Frame = 1
Query:  148 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 651
            IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVFL+ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD   +         PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RACB_ENTHI (Rho-related protein racB (Fragment) OS=Entamoeba histolytica GN=RACB PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 4.780e-50
Identity = 94/163 (57.67%), Postives = 121/163 (74.23%), Query Frame = 1
Query:  166 GDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAA 648
            G G VGKTC+L+SYT+N FPT+YVPTVFDN+SA V+VD   +NLGLWDTAGQEDY+R+RPLSY   DVFLL FS++S  S+EN++ KW PE+ H+ P  P +L+GTK+D+RD++            PIT+ QGE   K IGA  YIECS+ TQ+N++ VFD A
Sbjct:    1 GAGGVGKTCLLVSYTTNAFPTEYVPTVFDNYSATVMVDSRPINLGLWDTAGQEDYDRIRPLSYPQTDVFLLCFSVVSPPSFENISSKWKPEVSHHCPNAPCLLIGTKIDIRDEQTQTNKTCDKKIEPITSEQGEAKCKDIGALKYIECSALTQKNLRYVFDEA 163          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: CDC42_MACFA (Cell division control protein 42 homolog OS=Macaca fascicularis GN=CDC42 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 8.154e-50
Identity = 94/170 (55.29%), Postives = 125/170 (73.53%), Query Frame = 1
Query:  148 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 651
            IKCV VGDGAVGKTC+LISYT+N FP++YVPTVF+N++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVFL+ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD   +         PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFNNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RACD_ENTHI (Rho-related protein racD (Fragment) OS=Entamoeba histolytica GN=RACD PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.065e-49
Identity = 95/176 (53.98%), Postives = 126/176 (71.59%), Query Frame = 1
Query:  139 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF---LADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKV 657
            ++ +K V VGDG+VGKTC+LI YT+N FP DYVPTVFDN+ A + VDG  +NLGLWDTAGQED  +LRPLSY   D+FLL FS+IS+ S+ N++ KW+PE++HY P   +++VGT  D R+D+     LAD     PITT +GE+L K I A  Y+ECS+ T+  +  VFD AI +
Sbjct:    6 AKSVKLVVVGDGSVGKTCLLICYTTNEFPKDYVPTVFDNYMAPMTVDGEPINLGLWDTAGQEDSEQLRPLSYPNTDLFLLCFSVISRTSFNNISSKWLPEIKHYEPKCKMMVVGTNTDCRNDEAMIRKLADE-NQKPITTEEGEKLAKDIKAICYMECSALTRSGLNQVFDEAIHI 180          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RACA_DICDI (Rho-related protein racA OS=Dictyostelium discoideum GN=racA PE=1 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 3.099e-49
Identity = 92/169 (54.44%), Postives = 122/169 (72.19%), Query Frame = 1
Query:  148 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 654
            IK V VGDGAVGK+C+LI+YT+N FP +YVPTVFDN+SANV++DG   NLGLWDTAGQEDY+RLRPLSY   DVFL+ FS++S+AS+EN+  KW PE+ H+AP +PI+LVGTK DLR              ++ A+   L + +G   Y+E S+  Q N++ +F  AI+
Sbjct:    4 IKLVVVGDGAVGKSCLLIAYTTNAFPGEYVPTVFDNYSANVMIDGKPFNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIVSRASFENIRAKWYPEILHHAPNIPIVLVGTKNDLRGHHDLKRPE-----VSAAEANNLVRELGFSGYVETSALLQTNLRELFSLAIR 167          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RAC2_CAEEL (Ras-related protein rac-2 OS=Caenorhabditis elegans GN=rac-2 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.844e-48
Identity = 93/171 (54.39%), Postives = 121/171 (70.76%), Query Frame = 1
Query:  148 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 654
            IKCV VGDGAVGKTC+L+SYT+N FP +Y+ TVFD +S NV+VDG  +NL LWDTAGQ+DY++ R LS+   DVFL+ F+L + AS+ENV  KW PE+ H+ P  PIILVGTK DLR+D+  +         P++  QG  + K I A  Y+ECS+ TQ  +K VFD AI+
Sbjct:    4 IKCVVVGDGAVGKTCLLLSYTTNAFPGEYILTVFDTYSTNVMVDGRPINLSLWDTAGQDDYDQFRHLSFPQTDVFLVCFALNNPASFENVRAKWYPEVSHHCPNTPIILVGTKADLREDRDTIERLRERRLQPVSHTQGYVMAKEIKAVKYLECSALTQIGLKQVFDEAIR 174          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RACE_DICDI (Rho-related protein racE OS=Dictyostelium discoideum GN=racE PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.461e-47
Identity = 93/175 (53.14%), Postives = 120/175 (68.57%), Query Frame = 1
Query:  133 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKV 657
            S +  +K V VGDGAVGKTC+LI Y  N FP DYVPTVF+N++A        + + LWDTAGQE+Y+RLRPLSY GADV LL FS IS++SYE +  KW PE+ HY P VP ILVGTK+DLR+ +    +     PIT   G  ++K I A  Y+E S+KT+Q ++ VF AAI++
Sbjct:    7 SGATRVKLVVVGDGAVGKTCLLICYAQNDFPVDYVPTVFENYTATRKRGNEDIKVHLWDTAGQEEYDRLRPLSYPGADVVLLCFSTISQSSYEAIRDKWAPEVNHYIPDVPSILVGTKIDLREQQHPDPNSGKFEPITADMGISMQKQIKAKKYLEVSAKTRQGLEEVFSAAIEI 181          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RHOU_HUMAN (Rho-related GTP-binding protein RhoU OS=Homo sapiens GN=RHOU PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 8.438e-47
Identity = 92/172 (53.49%), Postives = 125/172 (72.67%), Query Frame = 1
Query:  142 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 651
            R +KCV VGDGAVGKT +++SYT+N +PT+Y+PT FDNFSA V VDG  V L L DTAGQ+++++LRPL Y   D+FLL FS++S +S++NV++KW+PE+R + P  PIILVGT+ DLR+D + L   D     P+     +   + I A  YIECS+ TQ+N+K VFDAAI
Sbjct:   48 RGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLCAEEIKAASYIECSALTQKNLKEVFDAAI 219          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RHOL_DROME (Ras-like GTP-binding protein RhoL OS=Drosophila melanogaster GN=RhoL PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 8.438e-47
Identity = 91/173 (52.60%), Postives = 123/173 (71.10%), Query Frame = 1
Query:  142 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR--DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 654
            R +K   VGDG VGKTCMLI+YT N FP +Y+PTVFDN + N+ VD    NL LWDTAGQEDY RLRPLSY   + FLL +S+ S+ S+ENV  KW PE+RH++  VP++LVGTKLDLR  + ++F         +TT +G+++RK I A   +ECS+K +QN++ VF+ A++
Sbjct:   10 RPLKITIVGDGMVGKTCMLITYTRNEFPEEYIPTVFDNHACNIAVDDRDYNLTLWDTAGQEDYERLRPLSYPSTNCFLLCYSISSRTSFENVKSKWWPEIRHFSAHVPVVLVGTKLDLRIPNSEKF---------VTTQEGKKMRKEIHAFNLVECSAKKKQNLQQVFEEAVR 173          
The following BLAST results are available for this feature:
BLAST of DR405133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDC42_CANFA2.146e-5055.88Cell division control protein 42 homolog OS=Canis ... [more]
CDC42_BOVIN2.146e-5055.88Cell division control protein 42 homolog OS=Bos ta... [more]
RACB_ENTHI4.780e-5057.67Rho-related protein racB (Fragment) OS=Entamoeba h... [more]
CDC42_MACFA8.154e-5055.29Cell division control protein 42 homolog OS=Macaca... [more]
RACD_ENTHI1.065e-4953.98Rho-related protein racD (Fragment) OS=Entamoeba h... [more]
RACA_DICDI3.099e-4954.44Rho-related protein racA OS=Dictyostelium discoide... [more]
RAC2_CAEEL5.844e-4854.39Ras-related protein rac-2 OS=Caenorhabditis elegan... [more]
RACE_DICDI6.461e-4753.14Rho-related protein racE OS=Dictyostelium discoide... [more]
RHOU_HUMAN8.438e-4753.49Rho-related GTP-binding protein RhoU OS=Homo sapie... [more]
RHOL_DROME8.438e-4752.60Ras-like GTP-binding protein RhoL OS=Drosophila me... [more]

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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240H19 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240H19 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405133 ID=DR405133; Name=DR405133; organism=Citrus sinensis; type=EST; length=657bp
GGGGCTCTCTCCTTTGTCTGTCTCTGCTCTTACAAAAATGCCGTACTTGT
TCTGAGTTAGGGTTCTGTAGCTGTAAAAACAAAGAAAGACGAGTAATAAA
GATACTGTCTTAAGTGCACGTGGCGCGAGATGAGTGCATCGAGGTTCATA
AAGTGCGTGACGGTCGGTGACGGCGCCGTCGGCAAGACTTGCATGCTCAT
TTCTTACACCAGCAACACTTTCCCGACGGATTATGTGCCAACAGTATTTG
ACAATTTCAGTGCAAATGTGGTAGTGGATGGAAGCACTGTTAATCTTGGG
TTGTGGGACACTGCAGGCCAGGAAGATTACAATAGACTAAGACCATTGAG
CTACCGCGGGGCAGATGTCTTCTTACTTGCATTCTCTCTCATTAGCAAGG
CCAGCTATGAAAATGTTGCTAAGAAATGGATTCCTGAGTTGAGGCATTAT
GCACCTGGTGTTCCAATAATTCTTGTCGGGACGAAGCTCGATCTTCGGGA
TGATAAGCAGTTCCTTGCAGATCACCCTGGTGCAGTGCCAATTACCACGG
CCCAAGGGGAGGAATTGAGAAAGTTGATAGGTGCTCCTGTTTACATTGAG
TGTAGTTCCAAAACACAACAGAATGTGAAAGCTGTCTTTGATGCGGCCAT
CAAGGTG
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