DR405133

Overview
NameDR405133
Unique NameDR405133
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RHOV_HUMAN (Rho-related GTP-binding protein RhoV OS=Homo sapiens GN=RHOV PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.298e-44
Identity = 89/173 (51.45%), Postives = 118/173 (68.21%), Query Frame = 1
Query:  148 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL-----ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 651
            IKCV VGDGAVGK+ +++SYT N +P  Y PT  D FS  V+VDG+ V + LWDTAGQED++RLR L Y   DVFL  FS++  +S++N+ +KW+PE+R + P  P++LVGT+ DLRDD   L         G VP   AQG  L + I A  Y+ECS+ TQ+N+K VFD+AI
Sbjct:   32 IKCVLVGDGAVGKSSLIVSYTCNGYPARYRPTALDTFSVQVLVDGAPVRIELWDTAGQEDFDRLRSLCYPDTDVFLACFSVVQPSSFQNITEKWLPEIRTHNPQAPVLLVGTQADLRDDVNVLIQLDQGGREGPVPQPQAQG--LAEKIRACCYLECSALTQKNLKEVFDSAI 202          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RHO1_ASHGO (GTP-binding protein RHO1 OS=Ashbya gossypii GN=RHO1 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.298e-44
Identity = 92/170 (54.12%), Postives = 116/170 (68.24%), Query Frame = 1
Query:  151 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 654
            K V VGDGA GKTC+LI +    FP  YVPTVFDN+ A+V VDG  V L LWDTAGQEDY+RLRPLSY  ++V L+ +S+    S ENV +KWI E+ ++  GVPIILVG K DLR+D Q +      G  P++ AQ +E+   IGA  YIECS+KT   V+ VF+AA +
Sbjct:   13 KLVIVGDGACGKTCLLIVFAKGKFPQVYVPTVFDNYVADVEVDGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICYSIDLPDSLENVMEKWISEVLYFCQGVPIILVGCKADLRNDPQVIEQLRQQGQQPVSQAQAQEVADQIGAVEYIECSAKTGFGVREVFEAATR 182          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RHOA_CANFA (Transforming protein RhoA OS=Canis familiaris GN=RHOA PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.001e-44
Identity = 87/170 (51.18%), Postives = 116/170 (68.24%), Query Frame = 1
Query:  151 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 654
            K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY+RLRPLSY   DV L+ FS+ S  S EN+ +KW PE++H+ P VPIILVG K DLR+D+    +       P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A +
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPTEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RHOA_RAT (Transforming protein RhoA OS=Rattus norvegicus GN=Rhoa PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.920e-44
Identity = 87/170 (51.18%), Postives = 116/170 (68.24%), Query Frame = 1
Query:  151 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 654
            K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY+RLRPLSY   DV L+ FS+ S  S EN+ +KW PE++H+ P VPIILVG K DLR+D+    +       P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A +
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RHOA_PONAB (Transforming protein RhoA OS=Pongo abelii GN=RHOA PE=2 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 3.920e-44
Identity = 87/170 (51.18%), Postives = 116/170 (68.24%), Query Frame = 1
Query:  151 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 654
            K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY+RLRPLSY   DV L+ FS+ S  S EN+ +KW PE++H+ P VPIILVG K DLR+D+    +       P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A +
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RHOA_MOUSE (Transforming protein RhoA OS=Mus musculus GN=Rhoa PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.920e-44
Identity = 87/170 (51.18%), Postives = 116/170 (68.24%), Query Frame = 1
Query:  151 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 654
            K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY+RLRPLSY   DV L+ FS+ S  S EN+ +KW PE++H+ P VPIILVG K DLR+D+    +       P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A +
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RHOA_HUMAN (Transforming protein RhoA OS=Homo sapiens GN=RHOA PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.920e-44
Identity = 87/170 (51.18%), Postives = 116/170 (68.24%), Query Frame = 1
Query:  151 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 654
            K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY+RLRPLSY   DV L+ FS+ S  S EN+ +KW PE++H+ P VPIILVG K DLR+D+    +       P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A +
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RHOA_BOVIN (Transforming protein RhoA OS=Bos taurus GN=RHOA PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.920e-44
Identity = 87/170 (51.18%), Postives = 116/170 (68.24%), Query Frame = 1
Query:  151 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 654
            K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY+RLRPLSY   DV L+ FS+ S  S EN+ +KW PE++H+ P VPIILVG K DLR+D+    +       P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A +
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RHO1_DROME (Ras-like GTP-binding protein Rho1 OS=Drosophila melanogaster GN=Rho1 PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.119e-44
Identity = 86/170 (50.59%), Postives = 116/170 (68.24%), Query Frame = 1
Query:  151 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 654
            K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY+RLRPLSY   DV L+ FS+ S  S EN+ +KW PE++H+ P VPIILVG K DLR+D   + D       P+   +G  + + I A  Y+ECS+K+++ V+ VF+ A +
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDPNTIRDLAKMKQEPVKPQEGRAMAEKINAFAYLECSAKSKEGVRDVFETATR 176          
BLAST of DR405133 vs. ExPASy Swiss-Prot
Match: RHO_APLCA (Ras-like GTP-binding protein RHO OS=Aplysia californica GN=RHO PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 6.686e-44
Identity = 87/170 (51.18%), Postives = 115/170 (67.65%), Query Frame = 1
Query:  151 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 654
            K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY+RLRPLSY   DV L+ FS+ S  S EN+ +KW PE+RH+ P VPIILVG K DLR+D+    +       P+    G  + + I A  Y+ECS+KT++ V+ VF+ A +
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVRHFCPNVPIILVGNKKDLRNDESTKRELMKMKQEPVRPEDGRAMAEKINAYSYLECSAKTKEGVRDVFETATR 176          
The following BLAST results are available for this feature:
BLAST of DR405133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHOV_HUMAN2.298e-4451.45Rho-related GTP-binding protein RhoV OS=Homo sapie... [more]
RHO1_ASHGO2.298e-4454.12GTP-binding protein RHO1 OS=Ashbya gossypii GN=RHO... [more]
RHOA_CANFA3.001e-4451.18Transforming protein RhoA OS=Canis familiaris GN=R... [more]
RHOA_RAT3.920e-4451.18Transforming protein RhoA OS=Rattus norvegicus GN=... [more]
RHOA_PONAB3.920e-4451.18Transforming protein RhoA OS=Pongo abelii GN=RHOA ... [more]
RHOA_MOUSE3.920e-4451.18Transforming protein RhoA OS=Mus musculus GN=Rhoa ... [more]
RHOA_HUMAN3.920e-4451.18Transforming protein RhoA OS=Homo sapiens GN=RHOA ... [more]
RHOA_BOVIN3.920e-4451.18Transforming protein RhoA OS=Bos taurus GN=RHOA PE... [more]
RHO1_DROME5.119e-4450.59Ras-like GTP-binding protein Rho1 OS=Drosophila me... [more]
RHO_APLCA6.686e-4451.18Ras-like GTP-binding protein RHO OS=Aplysia califo... [more]

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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240H19 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240H19 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405133 ID=DR405133; Name=DR405133; organism=Citrus sinensis; type=EST; length=657bp
GGGGCTCTCTCCTTTGTCTGTCTCTGCTCTTACAAAAATGCCGTACTTGT
TCTGAGTTAGGGTTCTGTAGCTGTAAAAACAAAGAAAGACGAGTAATAAA
GATACTGTCTTAAGTGCACGTGGCGCGAGATGAGTGCATCGAGGTTCATA
AAGTGCGTGACGGTCGGTGACGGCGCCGTCGGCAAGACTTGCATGCTCAT
TTCTTACACCAGCAACACTTTCCCGACGGATTATGTGCCAACAGTATTTG
ACAATTTCAGTGCAAATGTGGTAGTGGATGGAAGCACTGTTAATCTTGGG
TTGTGGGACACTGCAGGCCAGGAAGATTACAATAGACTAAGACCATTGAG
CTACCGCGGGGCAGATGTCTTCTTACTTGCATTCTCTCTCATTAGCAAGG
CCAGCTATGAAAATGTTGCTAAGAAATGGATTCCTGAGTTGAGGCATTAT
GCACCTGGTGTTCCAATAATTCTTGTCGGGACGAAGCTCGATCTTCGGGA
TGATAAGCAGTTCCTTGCAGATCACCCTGGTGCAGTGCCAATTACCACGG
CCCAAGGGGAGGAATTGAGAAAGTTGATAGGTGCTCCTGTTTACATTGAG
TGTAGTTCCAAAACACAACAGAATGTGAAAGCTGTCTTTGATGCGGCCAT
CAAGGTG
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