DR405114

Overview
NameDR405114
Unique NameDR405114
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DR405114 vs. ExPASy Swiss-Prot
Match: H3L1_LILLO (Histone H3-like 1 OS=Lilium longiflorum GN=gH3 PE=2 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 4.512e-20
Identity = 48/98 (48.98%), Postives = 66/98 (67.35%), Query Frame = 1 
Query:  187 KKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 480
            ++P R+RPGTVALREIR+ Q+S   LI   PF RLVRE+A +F  D RF +   + L+E  E  LV  F +  +C+IHAKR+ I  KD +LA+ ++GE
Sbjct:   49 RRPRRFRPGTVALREIRRIQRSNVPLIPHSPFMRLVRELAAEFLDDCRFAAETFIMLKEVVEDELVNHFGNVQICSIHAKRIIITVKDFKLAKLLKGE 146
[Close]
BLAST of DR405114 vs. ExPASy Swiss-Prot
Match: H3L2_LILLO (Histone H3-like 2 OS=Lilium longiflorum GN=gcH3 PE=2 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.007e-11
Identity = 46/101 (45.54%), Postives = 52/101 (51.49%), Query Frame = 1 
Query:   79 MARTKQTARKSTGGKAPRKQLXXXXXXXXXXXXG-GVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAY 378
            MAR K TAR STGGKAPRKQL              GVK+P     G                  RKLPFQ LVR+I QD KT LRF++H+V  L+E  E Y
Sbjct:    1 MARMKHTARMSTGGKAPRKQLASKALRKAPPPPTKGVKQPTTTTSGKWRFARFH----------RKLPFQGLVRKIWQDLKTHLRFKNHSVPPLEEVTEVY 91
The following BLAST results are available for this feature:
BLAST of DR405114 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
H3L1_LILLO4.512e-2048.98Histone H3-like 1 OS=Lilium longiflorum GN=gH3 PE=... [more]
H3L2_LILLO1.007e-1145.54Histone H3-like 2 OS=Lilium longiflorum GN=gcH3 PE... [more]

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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240G18 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240G18 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405114 ID=DR405114; Name=DR405114; organism=Citrus sinensis; type=EST; length=610bp
GGGGGAATTTCTTTCCGTCATTAAGGCGTTGCATTCAGATCTGTGCATTT
TNNNGNNTGTGTTTGTGATTAAAGAGTAATGGCCCGTACGAAGCAAACCG
CGCGCAAGTCAACTGGAGGAAAGGCTCCGAGGAAGCAGCTCGCCACAAAG
GCTGCAAGAAAACCTGCTCCAACAACTGGTGGAGTCAAGAAGCCTCATCG
TTACCGTCCTGGAACTGTCGCCCTCCGTGAAATCCGCAAATATCAGAAGA
GCACTGAGCTTTTGATCCGCAAGCTGCCTTTTCAGCGGCTGGTTCGTGAA
ATTGCTCAAGATTTCAAGACAGATTTGAGGTTCCAAAGCCACGCGGTTCT
TGCGCTGCAGGAAGCGGCAGAGGCTTATCTCGTGGGTCTGTTCGAGGACA
CCAACCTTTGTGCTATCCATGCCAAGCGAGTCACCATTATGCCCAAGGAT
ATTCAACTGGCAAGGCGAATCCGAGGCGAGCGTGCTTAATTTGTGATTCC
TTATGTAGTCGTCAGTTTCCTATTTAGTTTGCTAGTTTTTCTTTATTCCG
GTTTTTACATGTAAAGAATGATATGATGGATTGAAGAATATTTGGAATTT
GATATTTGTT
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