DR405114

Overview
NameDR405114
Unique NameDR405114
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DR405114 vs. ExPASy Swiss-Prot
Match: H32_CAIMO (Histone H3.2 OS=Cairina moschata PE=2 SV=2)

HSP 1 Score: 233.032 bits (593), Expect = 8.986e-61
Identity = 120/136 (88.24%), Postives = 123/136 (90.44%), Query Frame = 1 
Query:   79 MARTKQTARKSTGGKAPRKQLXXXXXXXXXXXXGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 486
            MARTKQTARKSTGGKAPRKQL            GGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of DR405114 vs. ExPASy Swiss-Prot
Match: H32_BOVIN (Histone H3.2 OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 233.032 bits (593), Expect = 8.986e-61
Identity = 120/136 (88.24%), Postives = 123/136 (90.44%), Query Frame = 1 
Query:   79 MARTKQTARKSTGGKAPRKQLXXXXXXXXXXXXGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 486
            MARTKQTARKSTGGKAPRKQL            GGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of DR405114 vs. ExPASy Swiss-Prot
Match: H32_TOBAC (Histone H3.2 OS=Nicotiana tabacum GN=B34 PE=1 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.174e-60
Identity = 121/136 (88.97%), Postives = 122/136 (89.71%), Query Frame = 1 
Query:   79 MARTKQTARKSTGGKAPRKQLXXXXXXXXXXXXGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 486
            MARTKQTARKSTGGKAPRKQL            GGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of DR405114 vs. ExPASy Swiss-Prot
Match: H32_PETCR (Histone H3.2 OS=Petroselinum crispum GN=H3-7 PE=3 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 1.174e-60
Identity = 121/136 (88.97%), Postives = 122/136 (89.71%), Query Frame = 1 
Query:   79 MARTKQTARKSTGGKAPRKQLXXXXXXXXXXXXGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 486
            MARTKQTARKSTGGKAPRKQL            GGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of DR405114 vs. ExPASy Swiss-Prot
Match: H32_ORYSJ (Histone H3.2 OS=Oryza sativa subsp. japonica GN=Os01g0866200 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.174e-60
Identity = 121/136 (88.97%), Postives = 122/136 (89.71%), Query Frame = 1 
Query:   79 MARTKQTARKSTGGKAPRKQLXXXXXXXXXXXXGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 486
            MARTKQTARKSTGGKAPRKQL            GGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of DR405114 vs. ExPASy Swiss-Prot
Match: H32_ORYSI (Histone H3.2 OS=Oryza sativa subsp. indica GN=OsI_019426 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.174e-60
Identity = 121/136 (88.97%), Postives = 122/136 (89.71%), Query Frame = 1 
Query:   79 MARTKQTARKSTGGKAPRKQLXXXXXXXXXXXXGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 486
            MARTKQTARKSTGGKAPRKQL            GGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of DR405114 vs. ExPASy Swiss-Prot
Match: H32_MAIZE (Histone H3.2 OS=Zea mays GN=H3C2 PE=1 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 1.174e-60
Identity = 121/136 (88.97%), Postives = 122/136 (89.71%), Query Frame = 1 
Query:   79 MARTKQTARKSTGGKAPRKQLXXXXXXXXXXXXGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 486
            MARTKQTARKSTGGKAPRKQL            GGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of DR405114 vs. ExPASy Swiss-Prot
Match: H32_EUPES (Histone H3.2 OS=Euphorbia esula GN=H3 PE=2 SV=3)

HSP 1 Score: 232.646 bits (592), Expect = 1.174e-60
Identity = 121/136 (88.97%), Postives = 122/136 (89.71%), Query Frame = 1 
Query:   79 MARTKQTARKSTGGKAPRKQLXXXXXXXXXXXXGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 486
            MARTKQTARKSTGGKAPRKQL            GGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of DR405114 vs. ExPASy Swiss-Prot
Match: H32_BRANA (Histone H3.2 OS=Brassica napus PE=2 SV=3)

HSP 1 Score: 232.646 bits (592), Expect = 1.174e-60
Identity = 121/136 (88.97%), Postives = 122/136 (89.71%), Query Frame = 1 
Query:   79 MARTKQTARKSTGGKAPRKQLXXXXXXXXXXXXGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 486
            MARTKQTARKSTGGKAPRKQL            GGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of DR405114 vs. ExPASy Swiss-Prot
Match: H32_ASPOF (Histone H3.2 OS=Asparagus officinalis PE=2 SV=3)

HSP 1 Score: 232.646 bits (592), Expect = 1.174e-60
Identity = 121/136 (88.97%), Postives = 122/136 (89.71%), Query Frame = 1 
Query:   79 MARTKQTARKSTGGKAPRKQLXXXXXXXXXXXXGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 486
            MARTKQTARKSTGGKAPRKQL            GGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
The following BLAST results are available for this feature:
BLAST of DR405114 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
H32_CAIMO8.986e-6188.24Histone H3.2 OS=Cairina moschata PE=2 SV=2[more]
H32_BOVIN8.986e-6188.24Histone H3.2 OS=Bos taurus PE=1 SV=2[more]
H32_TOBAC1.174e-6088.97Histone H3.2 OS=Nicotiana tabacum GN=B34 PE=1 SV=1[more]
H32_PETCR1.174e-6088.97Histone H3.2 OS=Petroselinum crispum GN=H3-7 PE=3 ... [more]
H32_ORYSJ1.174e-6088.97Histone H3.2 OS=Oryza sativa subsp. japonica GN=Os... [more]
H32_ORYSI1.174e-6088.97Histone H3.2 OS=Oryza sativa subsp. indica GN=OsI_... [more]
H32_MAIZE1.174e-6088.97Histone H3.2 OS=Zea mays GN=H3C2 PE=1 SV=2[more]
H32_EUPES1.174e-6088.97Histone H3.2 OS=Euphorbia esula GN=H3 PE=2 SV=3[more]
H32_BRANA1.174e-6088.97Histone H3.2 OS=Brassica napus PE=2 SV=3[more]
H32_ASPOF1.174e-6088.97Histone H3.2 OS=Asparagus officinalis PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240G18 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240G18 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405114 ID=DR405114; Name=DR405114; organism=Citrus sinensis; type=EST; length=610bp
GGGGGAATTTCTTTCCGTCATTAAGGCGTTGCATTCAGATCTGTGCATTT
TNNNGNNTGTGTTTGTGATTAAAGAGTAATGGCCCGTACGAAGCAAACCG
CGCGCAAGTCAACTGGAGGAAAGGCTCCGAGGAAGCAGCTCGCCACAAAG
GCTGCAAGAAAACCTGCTCCAACAACTGGTGGAGTCAAGAAGCCTCATCG
TTACCGTCCTGGAACTGTCGCCCTCCGTGAAATCCGCAAATATCAGAAGA
GCACTGAGCTTTTGATCCGCAAGCTGCCTTTTCAGCGGCTGGTTCGTGAA
ATTGCTCAAGATTTCAAGACAGATTTGAGGTTCCAAAGCCACGCGGTTCT
TGCGCTGCAGGAAGCGGCAGAGGCTTATCTCGTGGGTCTGTTCGAGGACA
CCAACCTTTGTGCTATCCATGCCAAGCGAGTCACCATTATGCCCAAGGAT
ATTCAACTGGCAAGGCGAATCCGAGGCGAGCGTGCTTAATTTGTGATTCC
TTATGTAGTCGTCAGTTTCCTATTTAGTTTGCTAGTTTTTCTTTATTCCG
GTTTTTACATGTAAAGAATGATATGATGGATTGAAGAATATTTGGAATTT
GATATTTGTT
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