DR405114

Overview
NameDR405114
Unique NameDR405114
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DR405114 vs. ExPASy Swiss-Prot
Match: H3_DERIM (Histone H3, embryonic OS=Dermasterias imbricata PE=2 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 2.614e-60
Identity = 119/136 (87.50%), Postives = 123/136 (90.44%), Query Frame = 1 
Query:   79 MARTKQTARKSTGGKAPRKQLXXXXXXXXXXXXGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 486
            MARTKQTARKSTGGKAPRKQL            GGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of DR405114 vs. ExPASy Swiss-Prot
Match: H32_ENCAL (Histone H3.2 OS=Encephalartos altensteinii PE=1 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 2.614e-60
Identity = 120/136 (88.24%), Postives = 122/136 (89.71%), Query Frame = 1 
Query:   79 MARTKQTARKSTGGKAPRKQLXXXXXXXXXXXXGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 486
            MARTKQTARKSTGGKAPRKQL            GGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of DR405114 vs. ExPASy Swiss-Prot
Match: H32_CRILO (Histone H3.2 OS=Cricetulus longicaudatus PE=2 SV=3)

HSP 1 Score: 231.491 bits (589), Expect = 2.614e-60
Identity = 119/136 (87.50%), Postives = 122/136 (89.71%), Query Frame = 1 
Query:   79 MARTKQTARKSTGGKAPRKQLXXXXXXXXXXXXGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 486
            MARTKQTARKSTGGKAPRKQL            GGVKKPHRYRPGTV LREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVTLREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of DR405114 vs. ExPASy Swiss-Prot
Match: H33_TRIPS (Histone H3.3 OS=Trichinella pseudospiralis GN=HHT3 PE=2 SV=3)

HSP 1 Score: 231.106 bits (588), Expect = 3.415e-60
Identity = 120/136 (88.24%), Postives = 122/136 (89.71%), Query Frame = 1 
Query:   79 MARTKQTARKSTGGKAPRKQLXXXXXXXXXXXXGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 486
            MARTKQTARKSTGGKAPRKQL            GGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of DR405114 vs. ExPASy Swiss-Prot
Match: H31_CHLRE (Histone H3 type 1 OS=Chlamydomonas reinhardtii GN=ch3-I PE=1 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 3.415e-60
Identity = 122/136 (89.71%), Postives = 123/136 (90.44%), Query Frame = 1 
Query:   79 MARTKQTARKSTGGKAPRKQLXXXXXXXXXXXXGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 486
            MARTKQTARKSTGGKAPRKQL            GGVKKPHRYRPGTVALREIRKYQKSTEL+IRKLPFQRLVREIAQDFKTDLRFQS AVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKTPAT-GGVKKPHRYRPGTVALREIRKYQKSTELVIRKLPFQRLVREIAQDFKTDLRFQSQAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135
[Close]
BLAST of DR405114 vs. ExPASy Swiss-Prot
Match: H3L3_ARATH (Histone H3-like 3 OS=Arabidopsis thaliana GN=At1g75600 PE=2 SV=3)

HSP 1 Score: 230.335 bits (586), Expect = 5.824e-60
Identity = 119/136 (87.50%), Postives = 121/136 (88.97%), Query Frame = 1 
Query:   79 MARTKQTARKSTGGKAPRKQLXXXXXXXXXXXXGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 486
            MARTKQTARKS GGKAPR  L            GGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQD+KTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKD+QLARRIRGERA
Sbjct:    1 MARTKQTARKSHGGKAPRTLLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDYKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRGERA 136
[Close]
BLAST of DR405114 vs. ExPASy Swiss-Prot
Match: H32_CICIN (Histone H3.2 OS=Cichorium intybus PE=2 SV=3)

HSP 1 Score: 230.335 bits (586), Expect = 5.824e-60
Identity = 119/136 (87.50%), Postives = 122/136 (89.71%), Query Frame = 1 
Query:   79 MARTKQTARKSTGGKAPRKQLXXXXXXXXXXXXGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 486
            MARTKQTARKSTGGKAPRKQL            GGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKD+QLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAWNTLATATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDMQLARRIRGERA 136
[Close]
BLAST of DR405114 vs. ExPASy Swiss-Prot
Match: H33_XENTR (Histone H3.3 OS=Xenopus tropicalis GN=TGas113e22.1 PE=1 SV=3)

HSP 1 Score: 229.95 bits (585), Expect = 7.607e-60
Identity = 119/136 (87.50%), Postives = 122/136 (89.71%), Query Frame = 1 
Query:   79 MARTKQTARKSTGGKAPRKQLXXXXXXXXXXXXGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 486
            MARTKQTARKSTGGKAPRKQL            GGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of DR405114 vs. ExPASy Swiss-Prot
Match: H33_XENLA (Histone H3.3 OS=Xenopus laevis PE=1 SV=3)

HSP 1 Score: 229.95 bits (585), Expect = 7.607e-60
Identity = 119/136 (87.50%), Postives = 122/136 (89.71%), Query Frame = 1 
Query:   79 MARTKQTARKSTGGKAPRKQLXXXXXXXXXXXXGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 486
            MARTKQTARKSTGGKAPRKQL            GGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of DR405114 vs. ExPASy Swiss-Prot
Match: H33_SPISO (Histone H3.3 OS=Spisula solidissima PE=1 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 7.607e-60
Identity = 119/136 (87.50%), Postives = 122/136 (89.71%), Query Frame = 1 
Query:   79 MARTKQTARKSTGGKAPRKQLXXXXXXXXXXXXGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 486
            MARTKQTARKSTGGKAPRKQL            GGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
The following BLAST results are available for this feature:
BLAST of DR405114 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
H3_DERIM2.614e-6087.50Histone H3, embryonic OS=Dermasterias imbricata PE... [more]
H32_ENCAL2.614e-6088.24Histone H3.2 OS=Encephalartos altensteinii PE=1 SV... [more]
H32_CRILO2.614e-6087.50Histone H3.2 OS=Cricetulus longicaudatus PE=2 SV=3[more]
H33_TRIPS3.415e-6088.24Histone H3.3 OS=Trichinella pseudospiralis GN=HHT3... [more]
H31_CHLRE3.415e-6089.71Histone H3 type 1 OS=Chlamydomonas reinhardtii GN=... [more]
H3L3_ARATH5.824e-6087.50Histone H3-like 3 OS=Arabidopsis thaliana GN=At1g7... [more]
H32_CICIN5.824e-6087.50Histone H3.2 OS=Cichorium intybus PE=2 SV=3[more]
H33_XENTR7.607e-6087.50Histone H3.3 OS=Xenopus tropicalis GN=TGas113e22.1... [more]
H33_XENLA7.607e-6087.50Histone H3.3 OS=Xenopus laevis PE=1 SV=3[more]
H33_SPISO7.607e-6087.50Histone H3.3 OS=Spisula solidissima PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240G18 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240G18 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405114 ID=DR405114; Name=DR405114; organism=Citrus sinensis; type=EST; length=610bp
GGGGGAATTTCTTTCCGTCATTAAGGCGTTGCATTCAGATCTGTGCATTT
TNNNGNNTGTGTTTGTGATTAAAGAGTAATGGCCCGTACGAAGCAAACCG
CGCGCAAGTCAACTGGAGGAAAGGCTCCGAGGAAGCAGCTCGCCACAAAG
GCTGCAAGAAAACCTGCTCCAACAACTGGTGGAGTCAAGAAGCCTCATCG
TTACCGTCCTGGAACTGTCGCCCTCCGTGAAATCCGCAAATATCAGAAGA
GCACTGAGCTTTTGATCCGCAAGCTGCCTTTTCAGCGGCTGGTTCGTGAA
ATTGCTCAAGATTTCAAGACAGATTTGAGGTTCCAAAGCCACGCGGTTCT
TGCGCTGCAGGAAGCGGCAGAGGCTTATCTCGTGGGTCTGTTCGAGGACA
CCAACCTTTGTGCTATCCATGCCAAGCGAGTCACCATTATGCCCAAGGAT
ATTCAACTGGCAAGGCGAATCCGAGGCGAGCGTGCTTAATTTGTGATTCC
TTATGTAGTCGTCAGTTTCCTATTTAGTTTGCTAGTTTTTCTTTATTCCG
GTTTTTACATGTAAAGAATGATATGATGGATTGAAGAATATTTGGAATTT
GATATTTGTT
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