DR405112

Overview
NameDR405112
Unique NameDR405112
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR405112 vs. ExPASy Swiss-Prot
Match: ARP6_YARLI (Actin-like protein ARP6 OS=Yarrowia lipolytica GN=ARP6 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 50/187 (26.74%), Postives = 86/187 (45.99%), Query Frame = 3
Query:  159 LVCDNGTGMVKAGFAGD-DAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTL--KYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTG--IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDAL 704
            ++ DNG+  +K+   GD + P A+   I GR            K  YVG +    +   +L  K P E G + NWD  + +W + FYN       +  +LLT+ PL        + Q++FE +     +    A L  ++SG+     +V+D+G   +H  P+  G      I R+++ G+ +T+ L
Sbjct:    1 MILDNGSYAIKSDRTGDAETPNAL---IRGR-----------DKTVYVGQDLTKCKDYASLVFKRPSEKGQLINWDIQKAVWDNLFYNPQTGVDTDSSLLLTQYPLTLPQVSANIDQVVFEEYGFEQYHRTEAANLVAWSSGQCLDACLVVDAGFNATHVTPVLFGQVHEPGIRRVNVGGKTMTNLL 173          
BLAST of DR405112 vs. ExPASy Swiss-Prot
Match: ARP6_ASPFU (Actin-like protein arp6 OS=Aspergillus fumigatus GN=arp6 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 59/231 (25.54%), Postives = 103/231 (44.59%), Query Frame = 3
Query:  135 ADAEDIQPL-----VCDNGTGMVKAGFAGDDAPR----------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRV--------APEEHPVLLTEAPLNPKANREKMTQIMFETFN-------VPAMYVAIQAVLSLYA-----------SGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDAL 704
            A A  +Q L     + DNG   +KAG+A    P           +  P+ + + R   + +G  Q ++ V D  +     +  + P+E G + NW+  ++IW + F++E  V        +PE+  ++LTEAP      ++   +I+ E +        V  +  A   V SL+            S +   +V+DSG   +   P+Y+G  +  AI RLD+ G+ LT+ L
Sbjct:   12 ASAPKVQSLPEKTFIIDNGAYTLKAGYAPGFPPPEDLGQALSACSTIPNAIAKTRGNRIYIG-AQLNSQVTDWNE-----MVFRRPVEKGYIVNWEAQKEIWDNAFFDEKTVRSKDLRIESPEDTTLVLTEAPNALPTLQKNADEIVMEEWGFGGYVRFVGPVLNAWNEVQSLFGDPIGQDSSSPISPKQCLLVVDSGYSHTTVTPVYKGQPIQRAIRRLDIGGKHLTNYL 236          
BLAST of DR405112 vs. ExPASy Swiss-Prot
Match: ARP5_DROPS (Actin-related protein 5 OS=Drosophila pseudoobscura pseudoobscura GN=Arp5 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 50/206 (24.27%), Postives = 98/206 (47.57%), Query Frame = 3
Query:  159 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHT-----------GVMVGMGQK---DAYVGDEAQSKRGILT-LKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEE---HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSL--YASGR---TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALM 707
            LV DNG+   + G+     P   F +++ +PR             G    +  +   +  VG++  +   +   LK P E  I++NW+  E+I+ + F  ++    E+   +P++LTEA  NP   R+ M++++FE + +PA+   I A+ S   Y + R   +  +++  G   +H +P+  G      + RL++ G  +   L+
Sbjct:    8 LVIDNGSYECRVGWNNTKEPALRFRNVLTKPRKDRKKEAIPDTTDGAPTPVAAEVPAEIQVGNDITNIEAVRAHLKSPFERNIITNWNHQEQIFDYIF-TKMGFEGEQSIANPIVLTEALANPNFCRQNMSELLFECYGIPAVSYGIDALYSWEHYQNRRKKVSDALIISLGYSTTHVIPVLNGKLQLQHVRRLNVGGYHIITYLL 212          
The following BLAST results are available for this feature:
BLAST of DR405112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 473
Match NameE-valueIdentityDescription
ARP6_YARLI2.951e-1126.74Actin-like protein ARP6 OS=Yarrowia lipolytica GN=... [more]
ARP6_ASPFU6.575e-1125.54Actin-like protein arp6 OS=Aspergillus fumigatus G... [more]
ARP5_DROPS6.575e-1124.27Actin-related protein 5 OS=Drosophila pseudoobscur... [more]

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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240G15 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240G15 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR405112 ID=DR405112; Name=DR405112; organism=Citrus sinensis; type=EST; length=707bp
GGGGCTCACTACTACATTCTTAATCTCTCAGCAGTACCAAATACAGAGCG
ATAGAGAGAATCGACACTCTCAGCTAGACTCCATCTTCGAATTTTTCTCT
CGTCGTCTCTTCAATCTAACTTTTATAAAAAATGGCCGATGCTGAGGATA
TTCAACCCCTTGTTTGTGACAATGGAACTGGAATGGTGAAGGCTGGATTT
GCTGGAGATGATGCTCCGAGGGCAGTATTCCCTAGTATTGTTGGTAGGCC
TCGACACACTGGAGTCATGGTTGGAATGGGGCAGAAGGATGCCTATGTTG
GTGATGAGGCCCAATCGAAAAGAGGTATTCTTACTTTGAAATACCCAATT
GAGCACGGTATTGTAAGCAACTGGGATGATATGGAAAAGATCTGGCATCA
TACCTTCTACAACGAGCTTCGTGTTGCTCCTGAAGAGCACCCAGTGCTTC
TCACTGAGGCACCTCTTAACCCCAAGGCCAACAGAGAGAAGATGACCCAA
ATTATGTTTGAAACTTTCAATGTGCCAGCCATGTACGTTGCCATCCAGGC
CGTTCTATCTCTTTATGCCAGTGGTCGTACAACTGGTATTGTGCTGGATT
CTGGTGATGGTGTGTCTCATACTGTACCAATCTATGAGGGATATGCCCTT
CCTCATGCCATTCTTCGTTTGGACTTGGCTGGTCGTGATCTCACTGATGC
ATTGATG
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