DR404983

Overview
NameDR404983
Unique NameDR404983
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length233
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DR404983 vs. ExPASy Swiss-Prot
Match: ACT_FUCDI (Actin OS=Fucus distichus PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.604e-23
Identity = 48/52 (92.31%), Postives = 51/52 (98.08%), Query Frame = 1 
Query:    4 SMKIKVVAPPERKYSVWIGGSVLASLNTFQQMWISKGEYDESGPSIVHRKCF 159
            +MKIKVVAPPERKYSVWIGGS+LASL+TFQQMWISK EYDESGPSIVHRKCF
Sbjct:  324 TMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDESGPSIVHRKCF 375
[Close]
BLAST of DR404983 vs. ExPASy Swiss-Prot
Match: ACT_COSCS (Actin (Fragment) OS=Costaria costata PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 8.604e-23
Identity = 48/52 (92.31%), Postives = 51/52 (98.08%), Query Frame = 1 
Query:    4 SMKIKVVAPPERKYSVWIGGSVLASLNTFQQMWISKGEYDESGPSIVHRKCF 159
            +MKIKVVAPPERKYSVWIGGS+LASL+TFQQMWISK EYDESGPSIVHRKCF
Sbjct:  280 TMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDESGPSIVHRKCF 331
[Close]
BLAST of DR404983 vs. ExPASy Swiss-Prot
Match: ACT_COLSC (Actin OS=Coleochaete scutata PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.604e-23
Identity = 48/52 (92.31%), Postives = 51/52 (98.08%), Query Frame = 1 
Query:    4 SMKIKVVAPPERKYSVWIGGSVLASLNTFQQMWISKGEYDESGPSIVHRKCF 159
            SMKIKVVAPPERKYSVWIGGS+LASL+TFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  326 SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 377
[Close]
BLAST of DR404983 vs. ExPASy Swiss-Prot
Match: ACT6_SOLTU (Actin-71 OS=Solanum tuberosum GN=AC71 PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 8.604e-23
Identity = 48/52 (92.31%), Postives = 51/52 (98.08%), Query Frame = 1 
Query:    4 SMKIKVVAPPERKYSVWIGGSVLASLNTFQQMWISKGEYDESGPSIVHRKCF 159
            SMKIKVVAPPERKYSVWIGGS+LASL+TFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  326 SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of DR404983 vs. ExPASy Swiss-Prot
Match: ACT4_ARATH (Actin-4 OS=Arabidopsis thaliana GN=ACT4 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.604e-23
Identity = 48/52 (92.31%), Postives = 51/52 (98.08%), Query Frame = 1 
Query:    4 SMKIKVVAPPERKYSVWIGGSVLASLNTFQQMWISKGEYDESGPSIVHRKCF 159
            SMKIKVVAPPERKYSVWIGGS+LASL+TFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  326 SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of DR404983 vs. ExPASy Swiss-Prot
Match: ACT3_SOLTU (Actin-58 OS=Solanum tuberosum GN=AC58 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.604e-23
Identity = 48/52 (92.31%), Postives = 51/52 (98.08%), Query Frame = 1 
Query:    4 SMKIKVVAPPERKYSVWIGGSVLASLNTFQQMWISKGEYDESGPSIVHRKCF 159
            SMKIKVVAPPERKYSVWIGGS+LASL+TFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  326 SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of DR404983 vs. ExPASy Swiss-Prot
Match: ACT3_PEA (Actin-3 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.604e-23
Identity = 48/52 (92.31%), Postives = 51/52 (98.08%), Query Frame = 1 
Query:    4 SMKIKVVAPPERKYSVWIGGSVLASLNTFQQMWISKGEYDESGPSIVHRKCF 159
            SMKIKVVAPPERKYSVWIGGS+LASL+TFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  326 SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of DR404983 vs. ExPASy Swiss-Prot
Match: ACT2_ABSGL (Actin-2 OS=Absidia glauca GN=ACT2 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.604e-23
Identity = 48/52 (92.31%), Postives = 51/52 (98.08%), Query Frame = 1 
Query:    4 SMKIKVVAPPERKYSVWIGGSVLASLNTFQQMWISKGEYDESGPSIVHRKCF 159
            SMKIK+VAPPERKYSVWIGGS+LASL+TFQQMWISK EYDESGPSIVHRKCF
Sbjct:  326 SMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 377
[Close]
BLAST of DR404983 vs. ExPASy Swiss-Prot
Match: ACT1_TOBAC (Actin OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.604e-23
Identity = 48/52 (92.31%), Postives = 51/52 (98.08%), Query Frame = 1 
Query:    4 SMKIKVVAPPERKYSVWIGGSVLASLNTFQQMWISKGEYDESGPSIVHRKCF 159
            SMKIKVVAPPERKYSVWIGGS+LASL+TFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  326 SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of DR404983 vs. ExPASy Swiss-Prot
Match: ACT1_SORBI (Actin-1 OS=Sorghum bicolor GN=AC1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.604e-23
Identity = 48/52 (92.31%), Postives = 51/52 (98.08%), Query Frame = 1 
Query:    4 SMKIKVVAPPERKYSVWIGGSVLASLNTFQQMWISKGEYDESGPSIVHRKCF 159
            SMKIKVVAPPERKYSVWIGGS+LASL+TFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  326 SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
The following BLAST results are available for this feature:
BLAST of DR404983 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 354
Match NameE-valueIdentityDescription
ACT_FUCDI8.604e-2392.31Actin OS=Fucus distichus PE=2 SV=1[more]
ACT_COSCS8.604e-2392.31Actin (Fragment) OS=Costaria costata PE=3 SV=2[more]
ACT_COLSC8.604e-2392.31Actin OS=Coleochaete scutata PE=2 SV=1[more]
ACT6_SOLTU8.604e-2392.31Actin-71 OS=Solanum tuberosum GN=AC71 PE=3 SV=2[more]
ACT4_ARATH8.604e-2392.31Actin-4 OS=Arabidopsis thaliana GN=ACT4 PE=1 SV=1[more]
ACT3_SOLTU8.604e-2392.31Actin-58 OS=Solanum tuberosum GN=AC58 PE=3 SV=1[more]
ACT3_PEA8.604e-2392.31Actin-3 OS=Pisum sativum PE=2 SV=1[more]
ACT2_ABSGL8.604e-2392.31Actin-2 OS=Absidia glauca GN=ACT2 PE=3 SV=1[more]
ACT1_TOBAC8.604e-2392.31Actin OS=Nicotiana tabacum PE=3 SV=1[more]
ACT1_SORBI8.604e-2392.31Actin-1 OS=Sorghum bicolor GN=AC1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCSAB-PNP1240A07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404983 ID=DR404983; Name=DR404983; organism=Citrus sinensis; type=EST; length=233bp
GGGAGCATGAAGATCAAGGTCGTGGCTCCACCAGAGAGAAAATACAGTGT
TTGGATTGGAGGATCAGTCCTTGCATCCCTCAACACCTTCCAGCAAATGT
GGATCTCAAAGGGCGAGTATGATGAGTCTGGTCCATCCATTGTCCACAGG
AAATGCTTCTAAGTTCTTTAAGTGCTTGATGGGTGAGTTCTTTTTTTCCA
TTTAGTTGGTTTTTTGTGTCACGTTTCTCGAAC
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