DR404975

Overview
NameDR404975
Unique NameDR404975
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6928 contig Csv1_Contig6928:14..754. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR404975 vs. ExPASy Swiss-Prot
Match: CARP_RHICH (Rhizopuspepsin OS=Rhizopus chinensis PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.629e-15
Identity = 62/216 (28.70%), Postives = 101/216 (46.76%), Query Frame = 2
Query:   83 KFTAIRVALFLFLILSPAAFALPNDGLVRIGLRKKKLDQINRLVGQTVSKEEETMRTPVRRYNLH-------GSLGDSDTDIVALNNF-MDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTG-AISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAI 703
            KFT I   + +   L+ A  A P +  + I L K                 +  ++  + +YN H       G + D+    V + ++  D +Y+G+V+IGTP + F + FDTGSS+LW+ S  C  +                   +G + +I YG G + SG  ++DNV +G L++K Q  IE  K  + +F     DG+LGLGF  I+  + +
Sbjct:    2 KFTLISSCIAI-AALAVAVDAAPGEKKISIPLAKNP---------NYKPSAKNAIQKAIAKYNKHKINTSTGGIVPDAGVGTVPMTDYGNDVEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLC--TNCGSRQTKYDPKQSSTYQADGRTWSISYGDGSSASGILAKDNVNLGGLLIKGQT-IELAKREAASFANGPNDGLLGLGFDTITTVRGV 204          
BLAST of DR404975 vs. ExPASy Swiss-Prot
Match: PAG1_BOVIN (Pregnancy-associated glycoprotein 1 OS=Bos taurus GN=PAG1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.192e-15
Identity = 48/133 (36.09%), Postives = 66/133 (49.62%), Query Frame = 2
Query:  314 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVW 712
            L N  D  Y G ++IGTP Q F V+FDT SS+LWVPS  C                      N  +  I YG+G + G    D V++G+LV  +Q F  + +E    F    +DG+LGL +  IS   AIP++
Sbjct:   63 LRNIKDLVYMGNITIGTPPQEFQVVFDTASSDLWVPSDFCTSPACSTHVRFRHLQSSTFRLTN-KTFRITYGSGRMKGVVVHDTVRIGNLVSTDQPFGLSIEEYG--FEGRIYDGVLGLNYPNISFSGAIPIF 192          
BLAST of DR404975 vs. ExPASy Swiss-Prot
Match: CARP3_RHINI (Rhizopuspepsin-3 OS=Rhizopus niveus PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.087e-15
Identity = 63/215 (29.30%), Postives = 103/215 (47.91%), Query Frame = 2
Query:   83 KFTAIRVALFLFLILSPAAFALPNDGLVRIGLRKKKLDQINRLVGQTVSKEEETMRTPVRRYNLHGSLGDSDTD-------IVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTG-AISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAI 703
            KFT I   + L L ++ +  A P+   V I L K K  + N          +  ++  + +Y+ H S+  S++        +   + + D +Y+GEV++GTP  T  + FDTGSS+LW  S+ C  +                  R+G + +I YG G + SG    D V +G L +++Q    A +EAS  F +   DG+LGLGF  I+  + +
Sbjct:    2 KFTLISSCVTLAL-MTLSIEAAPSGKKVNIPLTKNKDYKPNA---------KNAIQKAIAKYHRHRSVSSSNSTSTDGIGYVPVTDYYNDIEYYGEVTVGTPGVTLKLDFDTGSSDLWFASSLC--TNCGSSQTKYNPNESSTYARDGRTWSISYGDGSSASGILGTDTVILGGLTIRHQTIELARREAS-QFQSGPSDGLLGLGFDSITTVRGV 203          
BLAST of DR404975 vs. ExPASy Swiss-Prot
Match: CARP5_RHINI (Rhizopuspepsin-5 OS=Rhizopus niveus PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.168e-13
Identity = 64/218 (29.36%), Postives = 100/218 (45.87%), Query Frame = 2
Query:   83 KFTAIR--VALFLFLILSPAAFALPNDGLVRIGLRKKKLDQINRLVGQTVSKEEETMRTPVRRYNLHGSLGDSDTD--------IVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTG-AISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAI 703
            KF+ I   VAL + ++ + AA   PN   V I L K K  + N          +  ++  + +Y+ H S   S           +   + + D +YFG+V +GTP  T  + FDTGSS+LW  S+ C  +                  ++G + +I YG G + SG    D V +G L ++ Q    A +EAS +F     DG+LGLGF  I+  + +
Sbjct:    2 KFSLISSCVALAVLVLSTEAA---PNGKKVNIPLTKNKDYKPNA---------KNAIQKVLAKYHRHRSTSSSSNSTSTDGIGRVPVTDYYNDIEYFGQVKVGTPGVTLKLDFDTGSSDLWFASSLC--TNCGYSQTKYNPNQSRTYAKDGRAWSISYGDGSSASGILGTDTVVLGGLTIQRQTIELARREAS-SFQNGPSDGLLGLGFNSITTVRGV 204          
BLAST of DR404975 vs. ExPASy Swiss-Prot
Match: CARP4_RHINI (Rhizopuspepsin-4 OS=Rhizopus niveus PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.525e-13
Identity = 48/139 (34.53%), Postives = 72/139 (51.80%), Query Frame = 2
Query:  278 GSLG-DSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTG-AISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEIS 688
            GS G +S   +   ++  D +Y+GEV++GTP     + FDTGSS+LW  S  C  +                  ++G + +I YG G + SG   +D V +G L +KNQ  IE  K  + +F +   DG+LGLGF  I+
Sbjct:   69 GSAGTESSGSVPVTDDGNDIEYYGEVTVGTPGIKLKLDFDTGSSDLWFASTLC--TNCGSSQTKYDPSQSSTYAKDGRTWSISYGDGSSASGILGKDTVNLGGLKIKNQ-IIELAKREASSFSSGPSDGLLGLGFDSIT 204          
BLAST of DR404975 vs. ExPASy Swiss-Prot
Match: CARP1_RHINI (Rhizopuspepsin-1 OS=Rhizopus niveus GN=RNAP PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.992e-13
Identity = 60/210 (28.57%), Postives = 93/210 (44.29%), Query Frame = 2
Query:   83 KFTAIRVALFLFLILSPAAFALPNDGLVRIGLRKKKL--DQINRLVGQTVSKEEETMRTPVRRYNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTG-AISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAI 703
            KFT I   + L   ++ A  A PN   + I L K           + + ++K         R+    G   ++   +  ++   D +Y+GEV++GTP     + FDTGSS++W  S  C  S                   +G + +I YG G + SG  + DNV +G L++K Q  IE  K  S  F     DG+LGLGF  I+  + +
Sbjct:    2 KFTLISSCVAL-AAMTLAVEAAPNGKKINIPLAKNNSYKPSAKNALNKALAKYNR------RKVGSGGITTEASGSVPMVDYENDVEYYGEVTVGTPGIKLKLDFDTGSSDMWFASTLC--SSCSNSHTKYDPKKSSTYAADGRTWSISYGDGSSASGILATDNVNLGGLLIKKQT-IELAKRESSAFATDVIDGLLGLGFNTITTVRGV 201          
BLAST of DR404975 vs. ExPASy Swiss-Prot
Match: CARP_SYNRA (Syncephapepsin OS=Syncephalastrum racemosum GN=SPSR PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.397e-13
Identity = 47/121 (38.84%), Postives = 64/121 (52.89%), Query Frame = 2
Query:  329 DAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTG-AISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEIS 688
            D +Y+  VS+GTP+Q+  + FDTGSS+LW  S  C                     + G S  I YG G + SG  + DNV++G L +  Q    AT+E+S +F +   DGILGLGF  IS
Sbjct:   86 DVEYYATVSVGTPAQSIKLDFDTGSSDLWFSSTLC----TSCGSKSFDPTKSSTYKKVGKSWQISYGDGSSASGITATDNVELGGLKITGQTIELATRESS-SFSSGAIDGILGLGFDTIS 201          
BLAST of DR404975 vs. ExPASy Swiss-Prot
Match: CARP2_RHINI (Rhizopuspepsin-2 OS=Rhizopus niveus PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.252e-11
Identity = 41/128 (32.03%), Postives = 64/128 (50.00%), Query Frame = 2
Query:  323 FMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTG-AISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAI 703
            + D +Y+G+V++GTP  T  + FDTGSS+LW  S  C  +                  ++G + +I YG G + SG    D V +G L +  Q  IE  K  + +F +    G+LGLGF  I+  + +
Sbjct:   79 YNDIEYYGKVTVGTPGVTLKLDFDTGSSDLWFASTLC--TNCGSSQTKYNPNQSSTYAKDGRTWSISYGDGSSASGILGTDTVTLGGLKITKQT-IELAKREATSFQSGPSYGLLGLGFDTITTVRGV 203          
The following BLAST results are available for this feature:
BLAST of DR404975 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
CARP_RHICH1.629e-1528.70Rhizopuspepsin OS=Rhizopus chinensis PE=1 SV=2[more]
PAG1_BOVIN6.192e-1536.09Pregnancy-associated glycoprotein 1 OS=Bos taurus ... [more]
CARP3_RHINI8.087e-1529.30Rhizopuspepsin-3 OS=Rhizopus niveus PE=3 SV=1[more]
CARP5_RHINI1.168e-1329.36Rhizopuspepsin-5 OS=Rhizopus niveus PE=3 SV=2[more]
CARP4_RHINI1.525e-1334.53Rhizopuspepsin-4 OS=Rhizopus niveus PE=3 SV=1[more]
CARP1_RHINI1.992e-1328.57Rhizopuspepsin-1 OS=Rhizopus niveus GN=RNAP PE=1 S... [more]
CARP_SYNRA3.397e-1338.84Syncephapepsin OS=Syncephalastrum racemosum GN=SPS... [more]
CARP2_RHINI9.252e-1132.03Rhizopuspepsin-2 OS=Rhizopus niveus PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionCSAA-PNP1239P21 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone CSAA-PNP1239P21 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404975 ID=DR404975; Name=DR404975; organism=Citrus sinensis; type=EST; length=741bp
GGGGGATTTCTCGGTCTCGTCAGTCCACTTCTTTACTCTGTCTGTGCTCT
TTGAAAGATACTCAGTTGTCGACATGGGAACCAAATTCACAGCCATTCGG
GTTGCACTTTTTCTTTTTCTCATTTTGTCCCCTGCGGCCTTTGCTTTGCC
AAATGATGGATTGGTAAGAATTGGGCTGAGAAAGAAGAAATTGGATCAGA
TCAATCGCCTTGTTGGACAGACTGTATCTAAGGAAGAGGAAACGATGAGA
ACACCTGTCAGAAGATATAATCTCCATGGTAGTCTTGGAGATTCTGATAC
TGATATTGTTGCATTAAATAACTTTATGGATGCTCAGTATTTTGGGGAGG
TTAGTATTGGCACACCTTCCCAGACCTTCACTGTGATATTTGACACAGGA
AGTTCTAATCTTTGGGTGCCTTCTGCGAAGTGTTATTTCTCAGTTTCTTG
CTATTTCCACTCCAAGTATAAGTCCAGCCATTCAAGTACCTACAAAAGGA
ATGGGGCATCTGCCGCAATCCAATATGGGACTGGAGCAATTTCTGGTTTC
TTTAGCCAGGACAATGTGAAAGTTGGTGATCTTGTTGTTAAGAATCAGGA
TTTCATTGAGGCAACCAAAGAAGCTAGCATCACATTCTTGGCAGCCAAGT
TTGATGGTATACTTGGGCTTGGATTTCAAGAGATCTCAATTGGAAAAGCC
ATTCCAGTCTGGTATAATATGCTTTGATTAAGGTCTCGTTA
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