DR404964
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: MSI1H_MOUSE (RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 1.821e-31 Identity = 69/185 (37.30%), Postives = 118/185 (63.78%), Query Frame = 1 Query: 121 DNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSSNP 672 D+PH P K+FIGGL TT ++FG++G++ + ++M+D T + RGFGF+T+ D + VDKV+ + H ++ K ++ K P+ + +TKKIFVGG+ + + +++K++F ++GKV + ++ D TNR RGFGFV F+SE++V E + + + ++ VE KKA+PK+ +P Sbjct: 14 DSPH-----DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIV-EKVCEIHFHEINNKMVECKKAQPKEVMSP 192
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: MSI1H_HUMAN (RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.378e-31 Identity = 69/185 (37.30%), Postives = 117/185 (63.24%), Query Frame = 1 Query: 121 DNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSSNP 672 D+PH P K+FIGGL TT ++FG++G++ + ++M+D T + RGFGF+T+ D + VDKV+ + H ++ K ++ K P+ + +TKKIFVGG+ + + +++K +F ++GKV + ++ D TNR RGFGFV F+SE++V E + + + ++ VE KKA+PK+ +P Sbjct: 14 DSPH-----DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIV-EKVCEIHFHEINNKMVECKKAQPKEVMSP 192
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROA1_SCHAM (Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog OS=Schistocerca americana GN=HNRNP PE=2 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 8.458e-29 Identity = 75/183 (40.98%), Postives = 113/183 (61.75%), Query Frame = 1 Query: 121 DNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGS-GQSKDFKT-KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEM-LSKGNMIDMAGTQVEIKKAEPK 657 +N H G+ K+FIGGL TT + +HF ++G+I D V+MKD T + RGFGFITY+ +VD H ++G+ VE KR +P+ G+ + T KK+FVGGI + E++L+++F +YG V+ I+ D ET + RGF FV FD + VD++ LS+ + I G +++KKA PK Sbjct: 7 ENDH-GEPEHVRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQNARPHKVDGRVVEPKRAVPRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDKICLSRNHQI--RGKHIDVKKALPK 186
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: SQD_DROME (RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1 SV=3) HSP 1 Score: 125.946 bits (315), Expect = 1.884e-28 Identity = 69/190 (36.32%), Postives = 109/190 (57.37%), Query Frame = 1 Query: 97 AMGSKSKSDNPHTGDGASPG--KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKV-IEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 657 A + SDN G K+F+GGL +TT HFGKYG+I + D TG+ RGF FI + + +DKV D HIIN K+V+ K+ + KIFVGG+ + +S++E+K +F ++G ++E ++ D + ++ +GF F+ FDSE+VV ++L K +AG +V++K+A PK Sbjct: 35 AGSTNGSSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKAKARHG---------KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLL-KTPKQKIAGKEVDVKRATPK 214
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROA1_CAEEL (Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis elegans GN=hrp-1 PE=1 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 5.483e-28 Identity = 64/171 (37.43%), Postives = 107/171 (62.57%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKG--SGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKKAEPK 657 KIF+GGL +TT + + ++G+ITD ++M+D T + RGFGF+T++ + VD ++ HII+GK V+ KR +P+ + + TK+++V G+ +ED L +F+KYG V + +II D T + RGFGFV FD + VD+ +L K +M++ G + +++K K Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVN--GHRCDVRKGLSK 192 HSP 2 Score: 71.2478 bits (173), Expect = 5.508e-12 Identity = 39/104 (37.50%), Postives = 62/104 (59.62%), Query Frame = 1 Query: 361 VEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVD-EMLSKGNMIDMAGTQVEIKKAEPKKSSN 669 VEIK G + +KIFVGG+ S+ ++D ++ F+S++G++ + ++RD T RSRGFGFV F + VD M + ++ID G V+ K+A P+ N Sbjct: 4 VEIKAENGSGDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIID--GKTVDPKRAVPRDDKN 105
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROA1_DROME (Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila melanogaster GN=Hrb98DE PE=1 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.595e-27 Identity = 68/173 (39.31%), Postives = 105/173 (60.69%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED-THIINGKQVEIKRTIPKGSGQSKD--FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKKAEPKKS 663 K+FIGGL TT HF K+G+I D V+MKD T + RGFGFITY+ S++D+ + H I+G+ VE KR +P+ S + KK+FVG + E ++++F +G +++ I+ D ET + RGF FV FD + VD+ +L K + ++ G V++KKA PK++ Sbjct: 32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLN--GKMVDVKKALPKQN 202 HSP 2 Score: 68.5514 bits (166), Expect = 3.570e-11 Identity = 35/94 (37.23%), Postives = 57/94 (60.64%), Query Frame = 1 Query: 121 DNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGSGQ 399 D+P+ G A+ K+F+G L D + +F +G+I D I+ D+ TG+ RGF F+ + D VDKV+ + H +NGK V++K+ +PK + Q Sbjct: 113 DSPNAG--ATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKALPKQNDQ 204
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RA1L2_HUMAN (Heterogeneous nuclear ribonucleoprotein A1-like protein 2 OS=Homo sapiens GN=HNRNPA1L2 PE=2 SV=2) HSP 1 Score: 122.865 bits (307), Expect = 1.595e-27 Identity = 66/171 (38.60%), Postives = 100/171 (58.48%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 660 K+FIGGL +TT + HF ++G +TD V+M+D T + RGFGF+TYA VD + T H ++G+ VE KR + + Q KKIFVGGI E L+++F +YGK+ +I+ D + + RGF FV FD + VD+++ + + G E++KA PK+ Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVKGHNCEVRKALPKQ 184 HSP 2 Score: 68.5514 bits (166), Expect = 3.570e-11 Identity = 35/93 (37.63%), Postives = 53/93 (56.99%), Query Frame = 1 Query: 112 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 387 S+ D+ G + KIF+GG+ +DT +F +YG I IM DR +G+ RGF F+T+ D VDK VI+ H + G E+++ +PK Sbjct: 91 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPK 183
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROA3_RAT (Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus GN=Hnrnpa3 PE=1 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.303e-26 Identity = 66/172 (38.37%), Postives = 101/172 (58.72%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGSG--QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKKAEPKK 660 K+FIGGL +TT + +HF K+G +TD V+M+D T + RGFGF+TY+ VD + H ++G+ VE KR + + KKIFVGGI E L+++F KYGK+ +++ D ++ + RGF FV FD + VD+ ++ K + I+ G E+KKA K+ Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTIN--GHNCEVKKALSKQ 205 HSP 2 Score: 74.7146 bits (182), Expect = 4.982e-13 Identity = 38/98 (38.78%), Postives = 56/98 (57.14%), Query Frame = 1 Query: 112 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGSGQS 402 S+ D+ G + KIF+GG+ +DT +F KYG I +M+DR +G+ RGF F+T+ D VDK V++ H ING E+K+ + K QS Sbjct: 112 SREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQS 209
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROA3_MOUSE (Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus GN=Hnrnpa3 PE=1 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.303e-26 Identity = 66/172 (38.37%), Postives = 101/172 (58.72%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGSG--QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKKAEPKK 660 K+FIGGL +TT + +HF K+G +TD V+M+D T + RGFGF+TY+ VD + H ++G+ VE KR + + KKIFVGGI E L+++F KYGK+ +++ D ++ + RGF FV FD + VD+ ++ K + I+ G E+KKA K+ Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTIN--GHNCEVKKALSKQ 205 HSP 2 Score: 74.7146 bits (182), Expect = 4.982e-13 Identity = 38/98 (38.78%), Postives = 56/98 (57.14%), Query Frame = 1 Query: 112 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGSGQS 402 S+ D+ G + KIF+GG+ +DT +F KYG I +M+DR +G+ RGF F+T+ D VDK V++ H ING E+K+ + K QS Sbjct: 112 SREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQS 209
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROA3_HUMAN (Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens GN=HNRNPA3 PE=1 SV=2) HSP 1 Score: 119.013 bits (297), Expect = 2.303e-26 Identity = 66/172 (38.37%), Postives = 101/172 (58.72%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGSG--QSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKKAEPKK 660 K+FIGGL +TT + +HF K+G +TD V+M+D T + RGFGF+TY+ VD + H ++G+ VE KR + + KKIFVGGI E L+++F KYGK+ +++ D ++ + RGF FV FD + VD+ ++ K + I+ G E+KKA K+ Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTIN--GHNCEVKKALSKQ 205 HSP 2 Score: 74.7146 bits (182), Expect = 4.982e-13 Identity = 38/98 (38.78%), Postives = 56/98 (57.14%), Query Frame = 1 Query: 112 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGSGQS 402 S+ D+ G + KIF+GG+ +DT +F KYG I +M+DR +G+ RGF F+T+ D VDK V++ H ING E+K+ + K QS Sbjct: 112 SREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQS 209 The following BLAST results are available for this feature:
BLAST of DR404964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 155
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DR404964 ID=DR404964; Name=DR404964; organism=Citrus sinensis; type=EST; length=680bpback to top |