DR404964
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 8.498e-13 Identity = 37/174 (21.26%), Postives = 86/174 (49.43%), Query Frame = 1 Query: 160 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIK---KAEPKKSSN 669 + + LP++ T F G++ + +++D+ G G+GF+ Y ++ I + +NG +++ K + S+ K +++ G+P ++++ ++++ FS++G+++ +++ D T SRG F+ FD +E ++ N G+ I A P ++ N Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI---NTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKN 192
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RBMS3_PONAB (RNA-binding motif, single-stranded-interacting protein 3 OS=Pongo abelii GN=RBMS3 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.110e-12 Identity = 47/167 (28.14%), Postives = 79/167 (47.31%), Query Frame = 1 Query: 106 SKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGN 606 S + S N +G+ S ++I GLP TT K YG I + + D+ T Q +G+GF+ + P+ K + NG Q ++ + Q +D +++ +P S+ E EL+N +G V+ +I+RD SRG GF +S E + ++ N Sbjct: 44 SSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLK-ANGVQAQMAKQ------QEQD--PTNLYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGFARMESTEKCEVVIQHFN 200
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RBMS3_HUMAN (RNA-binding motif, single-stranded-interacting protein 3 OS=Homo sapiens GN=RBMS3 PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.110e-12 Identity = 47/167 (28.14%), Postives = 79/167 (47.31%), Query Frame = 1 Query: 106 SKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGN 606 S + S N +G+ S ++I GLP TT K YG I + + D+ T Q +G+GF+ + P+ K + NG Q ++ + Q +D +++ +P S+ E EL+N +G V+ +I+RD SRG GF +S E + ++ N Sbjct: 45 SSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLK-ANGVQAQMAKQ------QEQD--PTNLYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGFARMESTEKCEVVIQHFN 201
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ELAV1_XENTR (ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.110e-12 Identity = 36/173 (20.81%), Postives = 85/173 (49.13%), Query Frame = 1 Query: 160 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIK---KAEPKKSSN 669 + + LP++ T F G++ + +++D+ G G+GF+ Y + ++ I + + + IK ++ + S +S K +++ G+P ++++ ++++ F +G+++ +++ D T SRG F+ FD +E ++ N G+ I A P ++ N Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSVARPSSES--IKDANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFAANPNQNKN 192
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PUF60_RAT (Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60 PE=2 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12 Identity = 38/175 (21.71%), Postives = 85/175 (48.57%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGSGQSKDFKTK---------KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKA 648 ++++G + + T + F +G I + D T + +GF F+ Y P +E + ++ G+ +++ R P GQ++ + +I+V + +S+D++K+ F +GK+ + RD T + +G+GF+ ++ + + +S N+ D+ G + + KA Sbjct: 135 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR--PSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 307
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PUF60_PONAB (Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12 Identity = 38/175 (21.71%), Postives = 85/175 (48.57%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGSGQSKDFKTK---------KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKA 648 ++++G + + T + F +G I + D T + +GF F+ Y P +E + ++ G+ +++ R P GQ++ + +I+V + +S+D++K+ F +GK+ + RD T + +G+GF+ ++ + + +S N+ D+ G + + KA Sbjct: 129 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR--PSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 301
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PUF60_MOUSE (Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12 Identity = 38/175 (21.71%), Postives = 85/175 (48.57%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGSGQSKDFKTK---------KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKA 648 ++++G + + T + F +G I + D T + +GF F+ Y P +E + ++ G+ +++ R P GQ++ + +I+V + +S+D++K+ F +GK+ + RD T + +G+GF+ ++ + + +S N+ D+ G + + KA Sbjct: 135 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR--PSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 307
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PUF60_HUMAN (Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12 Identity = 38/175 (21.71%), Postives = 85/175 (48.57%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGSGQSKDFKTK---------KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKA 648 ++++G + + T + F +G I + D T + +GF F+ Y P +E + ++ G+ +++ R P GQ++ + +I+V + +S+D++K+ F +GK+ + RD T + +G+GF+ ++ + + +S N+ D+ G + + KA Sbjct: 130 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR--PSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 302
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PUF60_BOVIN (Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12 Identity = 38/175 (21.71%), Postives = 85/175 (48.57%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGSGQSKDFKTK---------KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKA 648 ++++G + + T + F +G I + D T + +GF F+ Y P +E + ++ G+ +++ R P GQ++ + +I+V + +S+D++K+ F +GK+ + RD T + +G+GF+ ++ + + +S N+ D+ G + + KA Sbjct: 101 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR--PSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 273
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PABP_NEOFI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12 Identity = 44/174 (25.29%), Postives = 85/174 (48.85%), Query Frame = 1 Query: 154 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGSGQSKDFKTK----KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 657 G +FI L + F +G+I + +D + G +G+GF+ Y + I+ + ++N K+V + I K QSK + K +++ I V+++E + F K+G++ + RD E +SRGFGFV F + + + + N ++ G ++ + +A+ K Sbjct: 140 GNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE-GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKK 311 The following BLAST results are available for this feature:
BLAST of DR404964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 155
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Sequences
The
following sequences are available for this feature:
EST sequence >DR404964 ID=DR404964; Name=DR404964; organism=Citrus sinensis; type=EST; length=680bpback to top |