DR404964

Overview
NameDR404964
Unique NameDR404964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PABP_ASPTN (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pab1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 43/174 (24.71%), Postives = 85/174 (48.85%), Query Frame = 1
Query:  154 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGSGQSKDFKTK----KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 657
            G +FI  L         +  F  +G+I    + +D + G  +G+GF+ Y      +  I+  +  ++N K+V +   I K   QSK  + K     +++  +   +SE+E +  F K+G++    + RD E  +SRGFGFV + + +     + + N  ++ G ++ + +A+ K
Sbjct:  136 GNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQE-GKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQKK 307          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PABP_ASPOR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus oryzae GN=pab1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 45/174 (25.86%), Postives = 84/174 (48.28%), Query Frame = 1
Query:  154 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGSGQSKDFKTK----KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 657
            G +FI  L         +  F  +G+I    + +D + G  +G+GF+ Y      +  I+  +  ++N K+V +   I K   QSK  + K     +++  I   V+E+E +  F K+G++    + RD E  +SRGFGFV F + E     + + N  ++   ++ + +A+ K
Sbjct:  137 GNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQE-GKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKK 308          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PABP_ASPFU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus fumigatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 44/174 (25.29%), Postives = 85/174 (48.85%), Query Frame = 1
Query:  154 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGSGQSKDFKTK----KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 657
            G +FI  L         +  F  +G+I    + +D + G  +G+GF+ Y      +  I+  +  ++N K+V +   I K   QSK  + K     +++  I   V+++E +  F K+G++    + RD E  +SRGFGFV F + +     + + N  ++ G ++ + +A+ K
Sbjct:  140 GNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE-GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKK 311          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ELAV1_MOUSE (ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.893e-12
Identity = 36/173 (20.81%), Postives = 87/173 (50.29%), Query Frame = 1
Query:  160 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK--GNMIDMAGTQVEIK-KAEPKKSSN 669
            + +  LP++ T       F   G++  + +++D+  G   G+GF+ Y      ++ I   + +  +   IK +  + S  S+  K   +++ G+P ++++ ++++ FS++G+++  +++ D  T  SRG  F+ FD     +E ++   G+    +   + +K  A P ++ N
Sbjct:   22 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPS--SEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFIGHKPPGSSEPITVKFAANPNQNKN 192          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: SHEP_DROYA (Protein alan shepard OS=Drosophila yakuba GN=shep PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.229e-12
Identity = 47/188 (25.00%), Postives = 93/188 (49.47%), Query Frame = 1
Query:  115 KSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS--KGNMIDMAGTQVEIKKAE--PKKSS 666
            ++ N   G+  S   ++I GL + TT         +YG I  +  + D+ T + +G+GF+ +  P+  +  ++    + GK V+ +        + ++     +++  +P    E +L+   SKYG+V+  +I+RD + N S+G GF   +S E  ++++    GN I  A   + +K A+  PKK +
Sbjct:  218 QNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKG---LQGKGVQAQ------MAKQQEQDPTNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMN-SKGVGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFADGGPKKKN 395          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: SHEP_DROSE (Protein alan shepard OS=Drosophila sechellia GN=shep PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.229e-12
Identity = 47/188 (25.00%), Postives = 93/188 (49.47%), Query Frame = 1
Query:  115 KSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS--KGNMIDMAGTQVEIKKAE--PKKSS 666
            ++ N   G+  S   ++I GL + TT         +YG I  +  + D+ T + +G+GF+ +  P+  +  ++    + GK V+ +        + ++     +++  +P    E +L+   SKYG+V+  +I+RD + N S+G GF   +S E  ++++    GN I  A   + +K A+  PKK +
Sbjct:  218 QNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKG---LQGKGVQAQ------MAKQQEQDPTNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMN-SKGVGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFADGGPKKKN 395          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: SHEP_DROME (Protein alan shepard OS=Drosophila melanogaster GN=shep PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.229e-12
Identity = 47/188 (25.00%), Postives = 93/188 (49.47%), Query Frame = 1
Query:  115 KSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS--KGNMIDMAGTQVEIKKAE--PKKSS 666
            ++ N   G+  S   ++I GL + TT         +YG I  +  + D+ T + +G+GF+ +  P+  +  ++    + GK V+ +        + ++     +++  +P    E +L+   SKYG+V+  +I+RD + N S+G GF   +S E  ++++    GN I  A   + +K A+  PKK +
Sbjct:  218 QNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKG---LQGKGVQAQ------MAKQQEQDPTNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMN-SKGVGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFADGGPKKKN 395          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: SHEP_DROER (Protein alan shepard OS=Drosophila erecta GN=shep PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.229e-12
Identity = 47/188 (25.00%), Postives = 93/188 (49.47%), Query Frame = 1
Query:  115 KSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS--KGNMIDMAGTQVEIKKAE--PKKSS 666
            ++ N   G+  S   ++I GL + TT         +YG I  +  + D+ T + +G+GF+ +  P+  +  ++    + GK V+ +        + ++     +++  +P    E +L+   SKYG+V+  +I+RD + N S+G GF   +S E  ++++    GN I  A   + +K A+  PKK +
Sbjct:  218 QNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKG---LQGKGVQAQ------MAKQQEQDPTNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMN-SKGVGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFADGGPKKKN 395          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12
Identity = 33/81 (40.74%), Postives = 52/81 (64.20%), Query Frame = 1
Query:  421 KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKS 663
            + FVGG+  +  +  L+N FSKYG V++ +II D ET RSRGFGFV F S+E + + +   N  D+ G  + + +A+ ++S
Sbjct:    7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQSRRS 87          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ELV1B_XENLA (ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-B PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12
Identity = 37/173 (21.39%), Postives = 83/173 (47.98%), Query Frame = 1
Query:  160 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIK---KAEPKKSSN 669
            + +  LP++ T       F   G++  + +++D+  G   G+GF+ Y +    ++ I   + +  +   IK +  + S  S+  K   +++ G+P ++++ ++++ F  +G ++  +++ D  T  SRG  F+ FD     +E ++  N     G+   I     A P +S N
Sbjct:   22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPS--SETIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFAANPNQSKN 192          
The following BLAST results are available for this feature:
BLAST of DR404964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
PABP_ASPTN1.450e-1224.71Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPOR1.450e-1225.86Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPFU1.450e-1225.29Polyadenylate-binding protein, cytoplasmic and nuc... [more]
ELAV1_MOUSE1.893e-1220.81ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1... [more]
SHEP_DROYA3.229e-1225.00Protein alan shepard OS=Drosophila yakuba GN=shep ... [more]
SHEP_DROSE3.229e-1225.00Protein alan shepard OS=Drosophila sechellia GN=sh... [more]
SHEP_DROME3.229e-1225.00Protein alan shepard OS=Drosophila melanogaster GN... [more]
SHEP_DROER3.229e-1225.00Protein alan shepard OS=Drosophila erecta GN=shep ... [more]
GRP_HORVU4.217e-1240.74Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]
ELV1B_XENLA4.217e-1221.39ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAA-PNP1239P08 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone CSAA-PNP1239P08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404964 ID=DR404964; Name=DR404964; organism=Citrus sinensis; type=EST; length=680bp
GGGGAACCCTGAATTNNNNNTCATCATATTTTCCCCCAAACATTTTCTCT
CCTTTAATCTCCTCCTTTCTCTAGAAAACTCTGTTAACACGACCAAGCTA
TGGGATCCAAATCGAAATCTGATAATCCTCACACCGGCGACGGCGCAAGC
CCCGGGAAGATTTTCATAGGTGGATTGCCTAAAGACACGACCTATGCTAC
GTTTAATAAGCATTTTGGAAAATATGGTGACATAACGGATTCGGTTATAA
TGAAAGATCGGTACACGGGGCAGCCTAGGGGTTTTGGCTTTATAACTTAT
GCCGATCCTTCTGTTGTAGACAAGGTTATTGAAGATACCCACATAATTAA
TGGAAAACAGGTTGAGATTAAAAGAACTATCCCAAAAGGCTCAGGTCAAT
CAAAGGACTTCAAGACAAAGAAGATATTTGTTGGTGGGATACCATCATCA
GTATCTGAAGATGAACTCAAGAATTTCTTCTCCAAATATGGGAAAGTTCT
GGAACACCAAATCATACGTGATCATGAAACTAACCGTTCTAGAGGTTTTG
GTTTTGTAATTTTTGATAGTGAAGAAGTTGTGGATGAAATGTTATCGAAG
GGAAATATGATTGATATGGCTGGTACCCAGGTGGAGATCAAGAAAGCTGA
ACCAAAGAAATCCTCGAACCCTCCACCTCC
back to top