DR404964

Overview
NameDR404964
Unique NameDR404964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RBM38_MOUSE (RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 32/72 (44.44%), Postives = 51/72 (70.83%), Query Frame = 1
Query:  157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH-IINGKQVEI 369
            KIF+GGLP  TT A+  K+F  +GDI ++V++ DR TG+ RG+GF+T AD +  D+  +D + II+G++  +
Sbjct:   33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKDPNPIIDGRKANV 104          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PU60B_DANRE (Poly(U)-binding-splicing factor PUF60-B OS=Danio rerio GN=puf60b PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.194e-12
Identity = 39/175 (22.29%), Postives = 85/175 (48.57%), Query Frame = 1
Query:  157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGSGQSKDFKTK---------KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKA 648
            ++++G +  +    T  + F  +G I    +  D  T + +GF F+ Y  P      +E  +  ++ G+ +++ R  P   GQ++    +         +I+V  I   +S+D++K+ F  +GK+    + R+  T + +GFGF+ ++  +   + +S  N+ D+ G  + + KA
Sbjct:   87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR--PGSIGQAQPIIEQLAEEARAYNRIYVASIHPDLSDDDIKSVFEAFGKIKSCMLAREPTTGKHKGFGFIEYEKPQSSLDAVSSMNLFDLGGQYLRVGKA 259          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.194e-12
Identity = 45/174 (25.86%), Postives = 83/174 (47.70%), Query Frame = 1
Query:  154 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGSGQSKDFKTK----KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 657
            G +FI  L         +  F  +G+I    + +D + G  +G+GF+ Y      +  I+  +  ++N K+V +   I K   QSK  + K     I++  I   V ++E +  F K+G++    + RD E  +SRGFGFV F + E     + + N  ++   ++ + +A+ K
Sbjct:  130 GNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEF-GVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSE-GKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKK 301          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 7.194e-12
Identity = 45/175 (25.71%), Postives = 85/175 (48.57%), Query Frame = 1
Query:  154 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSED----ELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMA-GTQVEIKKAEPK 657
            G +FI  L +          F  +G+I    +  D   G  +G+GF+ +      +  I+  +  ++NGK+V + + IP+   + +  +  K+F      + +ED    +LK FF  YGK+  ++++   E  +S+GFGFV F++ E  +  +   N  DM  G  + + +A+ K
Sbjct:   90 GNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDE-KGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKK 262          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RBMS3_MOUSE (RNA-binding motif, single-stranded-interacting protein 3 OS=Mus musculus GN=Rbms3 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.395e-12
Identity = 49/174 (28.16%), Postives = 81/174 (46.55%), Query Frame = 1
Query:   88 HDQAMGSKS-KSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGN 606
            H  A  S S  S +  +G+  S   ++I GLP  TT     K    YG I  +  + D+ T Q +G+GF+ +  P+   K +      NG Q ++ +       Q +D     +++  +P S+ E EL+N    +G V+  +I+RD     SRG GF   +S E  + ++   N
Sbjct:   33 HPMAPPSPSTNSSSNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLK-ANGVQAQMAKQ------QEQD--PTNLYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGFARMESTEKCEVVIQHFN 196          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RBMS1_MOUSE (RNA-binding motif, single-stranded-interacting protein 1 OS=Mus musculus GN=Rbms1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.227e-11
Identity = 44/167 (26.35%), Postives = 80/167 (47.90%), Query Frame = 1
Query:  106 SKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGN 606
            + S S +    D  S   ++I GLP +TT     K    YG I  +  + D+ T + +G+GF+ +  P+   K +      NG Q ++ +       Q +D     +++  +P S+ E EL+N    +G+V+  +++RD  +  SRG GF   +S E  + ++   N
Sbjct:   46 NNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALK-ANGVQAQMAKQ------QEQD--PTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRD-SSGASRGVGFARMESTEKCEAVIGHFN 202          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: SHEP_DROVI (Protein alan shepard OS=Drosophila virilis GN=shep PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.603e-11
Identity = 47/189 (24.87%), Postives = 93/189 (49.21%), Query Frame = 1
Query:  112 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS--KGNMIDMAGTQVEIKKAE--PKKSS 666
            +++ N   G+  S   ++I GL + TT         +YG I  +  + D+ T + +G+GF+ +  P+  +  ++      G Q ++ +       Q +D     +++  +P    E +L+   +KYG+V+  +I+RD + N S+G GF   +S E  ++++    GN I  A   + +K A+  PKK +
Sbjct:  229 AQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLINMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAYAEGAVKGLQ-AKGVQAQMAKQ------QEQD--PTNLYIANLPPHFKETDLEAMLAKYGQVVSTRILRDQQMN-SKGVGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFADGGPKKKN 407          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: SHEP_DROGR (Protein alan shepard OS=Drosophila grimshawi GN=shep PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.603e-11
Identity = 47/189 (24.87%), Postives = 93/189 (49.21%), Query Frame = 1
Query:  112 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS--KGNMIDMAGTQVEIKKAE--PKKSS 666
            +++ N   G+  S   ++I GL + TT         +YG I  +  + D+ T + +G+GF+ +  P+  +  ++      G Q ++ +       Q +D     +++  +P    E +L+   +KYG+V+  +I+RD + N S+G GF   +S E  ++++    GN I  A   + +K A+  PKK +
Sbjct:  243 AQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLINMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAYAEGAVKGLQ-AKGVQAQMAKQ------QEQD--PTNLYIANLPPHFKETDLEAMLAKYGQVVSTRILRDQQMN-SKGVGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFADGGPKKKN 421          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RBM38_HUMAN (RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.603e-11
Identity = 31/72 (43.06%), Postives = 51/72 (70.83%), Query Frame = 1
Query:  157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH-IINGKQVEI 369
            KIF+GGLP  TT A+  K+F  +GDI ++V++ DR TG+ RG+GF+T AD +  ++  +D + II+G++  +
Sbjct:   35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANV 106          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RBM24_DANRE (RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.603e-11
Identity = 31/72 (43.06%), Postives = 51/72 (70.83%), Query Frame = 1
Query:  157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH-IINGKQVEI 369
            KIF+GGLP  TT ++  K+F  +G+I ++V++ DR TG+ RG+GF+T AD S  D+  +D + II+G++  +
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKDPNPIIDGRKANV 83          
The following BLAST results are available for this feature:
BLAST of DR404964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
RBM38_MOUSE5.508e-1244.44RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE... [more]
PU60B_DANRE7.194e-1222.29Poly(U)-binding-splicing factor PUF60-B OS=Danio r... [more]
PABP_EMENI7.194e-1225.86Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_DROME7.194e-1225.71Polyadenylate-binding protein OS=Drosophila melano... [more]
RBMS3_MOUSE9.395e-1228.16RNA-binding motif, single-stranded-interacting pro... [more]
RBMS1_MOUSE1.227e-1126.35RNA-binding motif, single-stranded-interacting pro... [more]
SHEP_DROVI1.603e-1124.87Protein alan shepard OS=Drosophila virilis GN=shep... [more]
SHEP_DROGR1.603e-1124.87Protein alan shepard OS=Drosophila grimshawi GN=sh... [more]
RBM38_HUMAN1.603e-1143.06RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE... [more]
RBM24_DANRE1.603e-1143.06RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAA-PNP1239P08 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone CSAA-PNP1239P08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404964 ID=DR404964; Name=DR404964; organism=Citrus sinensis; type=EST; length=680bp
GGGGAACCCTGAATTNNNNNTCATCATATTTTCCCCCAAACATTTTCTCT
CCTTTAATCTCCTCCTTTCTCTAGAAAACTCTGTTAACACGACCAAGCTA
TGGGATCCAAATCGAAATCTGATAATCCTCACACCGGCGACGGCGCAAGC
CCCGGGAAGATTTTCATAGGTGGATTGCCTAAAGACACGACCTATGCTAC
GTTTAATAAGCATTTTGGAAAATATGGTGACATAACGGATTCGGTTATAA
TGAAAGATCGGTACACGGGGCAGCCTAGGGGTTTTGGCTTTATAACTTAT
GCCGATCCTTCTGTTGTAGACAAGGTTATTGAAGATACCCACATAATTAA
TGGAAAACAGGTTGAGATTAAAAGAACTATCCCAAAAGGCTCAGGTCAAT
CAAAGGACTTCAAGACAAAGAAGATATTTGTTGGTGGGATACCATCATCA
GTATCTGAAGATGAACTCAAGAATTTCTTCTCCAAATATGGGAAAGTTCT
GGAACACCAAATCATACGTGATCATGAAACTAACCGTTCTAGAGGTTTTG
GTTTTGTAATTTTTGATAGTGAAGAAGTTGTGGATGAAATGTTATCGAAG
GGAAATATGATTGATATGGCTGGTACCCAGGTGGAGATCAAGAAAGCTGA
ACCAAAGAAATCCTCGAACCCTCCACCTCC
back to top