DR404964
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RBM38_MOUSE (RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE=2 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12 Identity = 32/72 (44.44%), Postives = 51/72 (70.83%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH-IINGKQVEI 369 KIF+GGLP TT A+ K+F +GDI ++V++ DR TG+ RG+GF+T AD + D+ +D + II+G++ + Sbjct: 33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKDPNPIIDGRKANV 104
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PU60B_DANRE (Poly(U)-binding-splicing factor PUF60-B OS=Danio rerio GN=puf60b PE=2 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 7.194e-12 Identity = 39/175 (22.29%), Postives = 85/175 (48.57%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGSGQSKDFKTK---------KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKA 648 ++++G + + T + F +G I + D T + +GF F+ Y P +E + ++ G+ +++ R P GQ++ + +I+V I +S+D++K+ F +GK+ + R+ T + +GFGF+ ++ + + +S N+ D+ G + + KA Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR--PGSIGQAQPIIEQLAEEARAYNRIYVASIHPDLSDDDIKSVFEAFGKIKSCMLAREPTTGKHKGFGFIEYEKPQSSLDAVSSMNLFDLGGQYLRVGKA 259
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 7.194e-12 Identity = 45/174 (25.86%), Postives = 83/174 (47.70%), Query Frame = 1 Query: 154 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGSGQSKDFKTK----KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 657 G +FI L + F +G+I + +D + G +G+GF+ Y + I+ + ++N K+V + I K QSK + K I++ I V ++E + F K+G++ + RD E +SRGFGFV F + E + + N ++ ++ + +A+ K Sbjct: 130 GNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEF-GVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSE-GKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKK 301
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3) HSP 1 Score: 70.8626 bits (172), Expect = 7.194e-12 Identity = 45/175 (25.71%), Postives = 85/175 (48.57%), Query Frame = 1 Query: 154 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSED----ELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMA-GTQVEIKKAEPK 657 G +FI L + F +G+I + D G +G+GF+ + + I+ + ++NGK+V + + IP+ + + + K+F + +ED +LK FF YGK+ ++++ E +S+GFGFV F++ E + + N DM G + + +A+ K Sbjct: 90 GNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDE-KGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKK 262
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RBMS3_MOUSE (RNA-binding motif, single-stranded-interacting protein 3 OS=Mus musculus GN=Rbms3 PE=2 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 9.395e-12 Identity = 49/174 (28.16%), Postives = 81/174 (46.55%), Query Frame = 1 Query: 88 HDQAMGSKS-KSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGN 606 H A S S S + +G+ S ++I GLP TT K YG I + + D+ T Q +G+GF+ + P+ K + NG Q ++ + Q +D +++ +P S+ E EL+N +G V+ +I+RD SRG GF +S E + ++ N Sbjct: 33 HPMAPPSPSTNSSSNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLK-ANGVQAQMAKQ------QEQD--PTNLYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGFARMESTEKCEVVIQHFN 196
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RBMS1_MOUSE (RNA-binding motif, single-stranded-interacting protein 1 OS=Mus musculus GN=Rbms1 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.227e-11 Identity = 44/167 (26.35%), Postives = 80/167 (47.90%), Query Frame = 1 Query: 106 SKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGN 606 + S S + D S ++I GLP +TT K YG I + + D+ T + +G+GF+ + P+ K + NG Q ++ + Q +D +++ +P S+ E EL+N +G+V+ +++RD + SRG GF +S E + ++ N Sbjct: 46 NNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALK-ANGVQAQMAKQ------QEQD--PTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRD-SSGASRGVGFARMESTEKCEAVIGHFN 202
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: SHEP_DROVI (Protein alan shepard OS=Drosophila virilis GN=shep PE=3 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 1.603e-11 Identity = 47/189 (24.87%), Postives = 93/189 (49.21%), Query Frame = 1 Query: 112 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS--KGNMIDMAGTQVEIKKAE--PKKSS 666 +++ N G+ S ++I GL + TT +YG I + + D+ T + +G+GF+ + P+ + ++ G Q ++ + Q +D +++ +P E +L+ +KYG+V+ +I+RD + N S+G GF +S E ++++ GN I A + +K A+ PKK + Sbjct: 229 AQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLINMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAYAEGAVKGLQ-AKGVQAQMAKQ------QEQD--PTNLYIANLPPHFKETDLEAMLAKYGQVVSTRILRDQQMN-SKGVGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFADGGPKKKN 407
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: SHEP_DROGR (Protein alan shepard OS=Drosophila grimshawi GN=shep PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.603e-11 Identity = 47/189 (24.87%), Postives = 93/189 (49.21%), Query Frame = 1 Query: 112 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS--KGNMIDMAGTQVEIKKAE--PKKSS 666 +++ N G+ S ++I GL + TT +YG I + + D+ T + +G+GF+ + P+ + ++ G Q ++ + Q +D +++ +P E +L+ +KYG+V+ +I+RD + N S+G GF +S E ++++ GN I A + +K A+ PKK + Sbjct: 243 AQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLINMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAYAEGAVKGLQ-AKGVQAQMAKQ------QEQD--PTNLYIANLPPHFKETDLEAMLAKYGQVVSTRILRDQQMN-SKGVGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFADGGPKKKN 421
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RBM38_HUMAN (RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 1.603e-11 Identity = 31/72 (43.06%), Postives = 51/72 (70.83%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH-IINGKQVEI 369 KIF+GGLP TT A+ K+F +GDI ++V++ DR TG+ RG+GF+T AD + ++ +D + II+G++ + Sbjct: 35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANV 106
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RBM24_DANRE (RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.603e-11 Identity = 31/72 (43.06%), Postives = 51/72 (70.83%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH-IINGKQVEI 369 KIF+GGLP TT ++ K+F +G+I ++V++ DR TG+ RG+GF+T AD S D+ +D + II+G++ + Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKDPNPIIDGRKANV 83 The following BLAST results are available for this feature:
BLAST of DR404964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 155
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Sequences
The
following sequences are available for this feature:
EST sequence >DR404964 ID=DR404964; Name=DR404964; organism=Citrus sinensis; type=EST; length=680bpback to top |