DR404964

Overview
NameDR404964
Unique NameDR404964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: SHEP_DROWI (Protein alan shepard OS=Drosophila willistoni GN=shep PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 47/181 (25.97%), Postives = 89/181 (49.17%), Query Frame = 1
Query:  136 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS--KGNMIDMAGTQVEIKKAE--PKKSS 666
            G+  S   ++I GL + TT         +YG I  +  + D+ T + +G+GF+ +  P+  +  ++      G Q ++ +       Q +D     +++  +P    E +L+   SKYG+V+  +I+RD + N S+G GF   +S E  ++++    GN I  A   + +K A+  PKK +
Sbjct:  231 GEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAYAENAVKGLQ-AKGVQAQMAKQ------QEQD--PTNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMN-SKGVGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFADGGPKKKN 401          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PABP_DEBHA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Debaryomyces hansenii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 47/175 (26.86%), Postives = 84/175 (48.00%), Query Frame = 1
Query:  154 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGSGQSKDFKTK----KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 660
            G IFI  L         +  F  +G I    +  D   G  + FGF+ Y      +  IE+ +  ++N ++V + + I K   +SK  + K     ++   I    SE+E K  F  YGK+    + +DHE  +S+GFGFV F++ E   + + + N  ++ G ++ + +A+ K+
Sbjct:  139 GNIFIKNLHPAIDNKALHDTFTAFGKILSCKVATDDM-GISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESKFEEMKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHE-GKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKR 311          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PABP_CANAL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida albicans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 46/175 (26.29%), Postives = 86/175 (49.14%), Query Frame = 1
Query:  154 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGSGQSKDFKTK----KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 660
            G IFI  L         +  F  +G I    +  D + GQ + FGF+ Y      +  IE+ +  ++N ++V + + I K   +SK  + K     I+V  I  + SE+  +  FS +GK+    + +D +  +S+GFGFV F+  E   + + + N  ++ G ++ + +A+ K+
Sbjct:  140 GNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEF-GQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQD-GKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKR 312          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PABP_ASPCL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus clavatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 46/159 (28.93%), Postives = 77/159 (48.43%), Query Frame = 1
Query:  154 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGSGQSKDFKTK----KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEE----VVDEMLSK 600
            G +FI  L         +  F  +G+I    + +D + G  +G+GF+ Y      +  I+  +  ++N K+V +   I K   QSK  + K     I++  I   V+E+E +  F ++G++    + RD E  +SRGFGFV + + E     VDEM  K
Sbjct:  139 GNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPE-GKSRGFGFVNYSTHESAQAAVDEMHDK 295          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 45/172 (26.16%), Postives = 85/172 (49.42%), Query Frame = 1
Query:  160 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIIN--GKQVEIKRTIPKGSGQSKDFKT-KKIFVGGIPSSVSEDELKNFFSKYGKVLE-HQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKS 663
            +++GGL +  +     + F + G + ++ + KDR TGQ +G+GF+ +      D  I+  ++I   GK + +     K S  +K+      IF+G +   + E  L + FS +G +L+  +I+RD +T  S+G+ F+ F S +  D  +   N   +    + +  A  K S
Sbjct:   15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVN----KASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDS 182          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 45/172 (26.16%), Postives = 85/172 (49.42%), Query Frame = 1
Query:  160 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIIN--GKQVEIKRTIPKGSGQSKDFKT-KKIFVGGIPSSVSEDELKNFFSKYGKVLE-HQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKS 663
            +++GGL +  +     + F + G + ++ + KDR TGQ +G+GF+ +      D  I+  ++I   GK + +     K S  +K+      IF+G +   + E  L + FS +G +L+  +I+RD +T  S+G+ F+ F S +  D  +   N   +    + +  A  K S
Sbjct:   15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVN----KASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDS 182          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: SF3B4_HUMAN (Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 45/172 (26.16%), Postives = 85/172 (49.42%), Query Frame = 1
Query:  160 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIIN--GKQVEIKRTIPKGSGQSKDFKT-KKIFVGGIPSSVSEDELKNFFSKYGKVLE-HQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKS 663
            +++GGL +  +     + F + G + ++ + KDR TGQ +G+GF+ +      D  I+  ++I   GK + +     K S  +K+      IF+G +   + E  L + FS +G +L+  +I+RD +T  S+G+ F+ F S +  D  +   N   +    + +  A  K S
Sbjct:   15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVN----KASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDS 182          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RBM39_MOUSE (RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 38/151 (25.17%), Postives = 73/151 (48.34%), Query Frame = 1
Query:  214 FGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVV--------DKVIEDTHIINGKQVEIKRTIPKGSGQSKDFK-TKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 639
            F   G + D  ++ DR + + RG  ++ + D S V         +V+    I+   Q E  R     +   K      +++VG +  +++ED L+  F  +G++   Q++ D ET RS+G+GF+ F   E   + L + N  ++AG  +++
Sbjct:  173 FSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVSSVRLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PABP_PHANO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Phaeosphaeria nodorum GN=PAB1 PE=3 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 46/174 (26.44%), Postives = 81/174 (46.55%), Query Frame = 1
Query:  154 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGSGQSKDFKTK----KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 657
            G +FI  L         +  F  +G+I    + +D   G  +G+GF+ Y      +  I+  +  ++N K+V +   IPK    SK  + K     I+V  I   V++++ +  F K+G +    I RD +  +SRGFGFV +   E     +   N I+  G ++ + +A+ K
Sbjct:  136 GNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDEL-GNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQ-GKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYVGRAQKK 307          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RBMS1_BOVIN (RNA-binding motif, single-stranded-interacting protein 1 OS=Bos taurus GN=RBMS1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 44/167 (26.35%), Postives = 80/167 (47.90%), Query Frame = 1
Query:  106 SKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGN 606
            + S S +    D  S   ++I GLP +TT     K    YG I  +  + D+ T + +G+GF+ +  P+   K +      +G Q ++ +       Q +D     +++  +P S+ E EL+N    +G+V+  +I+RD  +  SRG GF   +S E  + ++   N
Sbjct:   46 NNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALK-ASGVQAQMAKQ------QEQD--PTNLYISNLPLSMDEQELENMLKPFGQVISTRILRD-SSGTSRGVGFARMESTEKCEAVIGHFN 202          
The following BLAST results are available for this feature:
BLAST of DR404964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
SHEP_DROWI2.093e-1125.97Protein alan shepard OS=Drosophila willistoni GN=s... [more]
PABP_DEBHA2.093e-1126.86Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_CANAL2.093e-1126.29Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPCL2.093e-1128.93Polyadenylate-binding protein, cytoplasmic and nuc... [more]
SF3B4_RAT2.734e-1126.16Splicing factor 3B subunit 4 OS=Rattus norvegicus ... [more]
SF3B4_MOUSE2.734e-1126.16Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf... [more]
SF3B4_HUMAN2.734e-1126.16Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF... [more]
RBM39_MOUSE2.734e-1125.17RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE... [more]
PABP_PHANO2.734e-1126.44Polyadenylate-binding protein, cytoplasmic and nuc... [more]
RBMS1_BOVIN3.570e-1126.35RNA-binding motif, single-stranded-interacting pro... [more]

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Properties
Property NameValue
Genbank descriptionCSAA-PNP1239P08 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone CSAA-PNP1239P08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404964 ID=DR404964; Name=DR404964; organism=Citrus sinensis; type=EST; length=680bp
GGGGAACCCTGAATTNNNNNTCATCATATTTTCCCCCAAACATTTTCTCT
CCTTTAATCTCCTCCTTTCTCTAGAAAACTCTGTTAACACGACCAAGCTA
TGGGATCCAAATCGAAATCTGATAATCCTCACACCGGCGACGGCGCAAGC
CCCGGGAAGATTTTCATAGGTGGATTGCCTAAAGACACGACCTATGCTAC
GTTTAATAAGCATTTTGGAAAATATGGTGACATAACGGATTCGGTTATAA
TGAAAGATCGGTACACGGGGCAGCCTAGGGGTTTTGGCTTTATAACTTAT
GCCGATCCTTCTGTTGTAGACAAGGTTATTGAAGATACCCACATAATTAA
TGGAAAACAGGTTGAGATTAAAAGAACTATCCCAAAAGGCTCAGGTCAAT
CAAAGGACTTCAAGACAAAGAAGATATTTGTTGGTGGGATACCATCATCA
GTATCTGAAGATGAACTCAAGAATTTCTTCTCCAAATATGGGAAAGTTCT
GGAACACCAAATCATACGTGATCATGAAACTAACCGTTCTAGAGGTTTTG
GTTTTGTAATTTTTGATAGTGAAGAAGTTGTGGATGAAATGTTATCGAAG
GGAAATATGATTGATATGGCTGGTACCCAGGTGGAGATCAAGAAAGCTGA
ACCAAAGAAATCCTCGAACCCTCCACCTCC
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