DR404964
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RBM38_XENTR (RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11 Identity = 30/72 (41.67%), Postives = 51/72 (70.83%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH-IINGKQVEI 369 KIF+GGLP TT A+ K+F +GDI ++V++ DR TG+ RG+GF+T +D + ++ +D + II+G++ + Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAERACKDPNPIIDGRKANV 83
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RBM38_CHICK (RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11 Identity = 30/72 (41.67%), Postives = 51/72 (70.83%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH-IINGKQVEI 369 KIF+GGLP TT ++ K+F +GDI ++V++ DR TG+ RG+GF+T AD + ++ +D + II+G++ + Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANV 83
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RBM24_XENTR (RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11 Identity = 30/72 (41.67%), Postives = 51/72 (70.83%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH-IINGKQVEI 369 KIF+GGLP TT ++ K+F +GDI ++V++ DR TG+ RG+GF+T AD + ++ +D + II+G++ + Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANV 83
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RBM24_CHICK (RNA-binding protein 24 OS=Gallus gallus GN=RBM24 PE=2 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11 Identity = 30/72 (41.67%), Postives = 51/72 (70.83%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH-IINGKQVEI 369 KIF+GGLP TT ++ K+F +GDI ++V++ DR TG+ RG+GF+T AD + ++ +D + II+G++ + Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANV 83
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RB24B_XENLA (RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-B PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11 Identity = 30/72 (41.67%), Postives = 51/72 (70.83%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH-IINGKQVEI 369 KIF+GGLP TT ++ K+F +GDI ++V++ DR TG+ RG+GF+T AD + ++ +D + II+G++ + Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANV 83
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RB24A_XENLA (RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-A PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11 Identity = 30/72 (41.67%), Postives = 51/72 (70.83%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH-IINGKQVEI 369 KIF+GGLP TT ++ K+F +GDI ++V++ DR TG+ RG+GF+T AD + ++ +D + II+G++ + Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANV 83
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PABP_YEAST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Saccharomyces cerevisiae GN=PAB1 PE=1 SV=4) HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11 Identity = 49/200 (24.50%), Postives = 97/200 (48.50%), Query Frame = 1 Query: 106 SKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGSG------QSKDFKTKK--------IFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 657 S+ + D+ A +++ + +TT F + F K+G I + + KD G+ +GFGF+ Y K +E + +NG+++ + R K Q + ++ +K +FV + SV +++L+ F+ YG + +++R E +S+GFGFV F + E + +++ N +AG + + A+ K Sbjct: 203 SRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDA-DGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRK 400
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PABP_PICST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia stipitis GN=PAB1 PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11 Identity = 47/175 (26.86%), Postives = 85/175 (48.57%), Query Frame = 1 Query: 154 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGSGQSKDFKTK----KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 660 G IFI L + F +G I + D GQ + FGF+ Y + IE+ + ++N ++V + + I K +SK + K I+V I SE++LK F+ YG + + +D E +S+GFGFV ++ E + + + N ++ G ++ + +A+ K+ Sbjct: 140 GNIFIKNLHPAIDNKALHDTFSTFGKILSCKVATDDM-GQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEIKANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAE-GKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQKKR 312
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RBMS1_RAT (RNA-binding motif, single-stranded-interacting protein 1 OS=Rattus norvegicus GN=Rbms1 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11 Identity = 43/167 (25.75%), Postives = 80/167 (47.90%), Query Frame = 1 Query: 106 SKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGN 606 + S S + D S ++I GLP +TT K YG I + + D+ T + +G+GF+ + P+ K + +G Q ++ + Q +D +++ +P S+ E EL+N +G+V+ +++RD + SRG GF +S E + ++ N Sbjct: 46 NNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALK-ASGVQAQMAKQ------QEQD--PTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRD-SSGTSRGVGFARMESTEKCEAVIGHFN 202
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RBM24_HUMAN (RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11 Identity = 30/72 (41.67%), Postives = 51/72 (70.83%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH-IINGKQVEI 369 KIF+GGLP TT A+ K+F +G+I ++V++ DR TG+ RG+GF+T AD + ++ +D + II+G++ + Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANV 83 The following BLAST results are available for this feature:
BLAST of DR404964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 155
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DR404964 ID=DR404964; Name=DR404964; organism=Citrus sinensis; type=EST; length=680bpback to top |