DR404964

Overview
NameDR404964
Unique NameDR404964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RBM38_XENTR (RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 30/72 (41.67%), Postives = 51/72 (70.83%), Query Frame = 1
Query:  157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH-IINGKQVEI 369
            KIF+GGLP  TT A+  K+F  +GDI ++V++ DR TG+ RG+GF+T +D +  ++  +D + II+G++  +
Sbjct:   12 KIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAERACKDPNPIIDGRKANV 83          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RBM38_CHICK (RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 30/72 (41.67%), Postives = 51/72 (70.83%), Query Frame = 1
Query:  157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH-IINGKQVEI 369
            KIF+GGLP  TT ++  K+F  +GDI ++V++ DR TG+ RG+GF+T AD +  ++  +D + II+G++  +
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANV 83          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RBM24_XENTR (RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 30/72 (41.67%), Postives = 51/72 (70.83%), Query Frame = 1
Query:  157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH-IINGKQVEI 369
            KIF+GGLP  TT ++  K+F  +GDI ++V++ DR TG+ RG+GF+T AD +  ++  +D + II+G++  +
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANV 83          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RBM24_CHICK (RNA-binding protein 24 OS=Gallus gallus GN=RBM24 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 30/72 (41.67%), Postives = 51/72 (70.83%), Query Frame = 1
Query:  157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH-IINGKQVEI 369
            KIF+GGLP  TT ++  K+F  +GDI ++V++ DR TG+ RG+GF+T AD +  ++  +D + II+G++  +
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANV 83          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RB24B_XENLA (RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-B PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 30/72 (41.67%), Postives = 51/72 (70.83%), Query Frame = 1
Query:  157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH-IINGKQVEI 369
            KIF+GGLP  TT ++  K+F  +GDI ++V++ DR TG+ RG+GF+T AD +  ++  +D + II+G++  +
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANV 83          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RB24A_XENLA (RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-A PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 30/72 (41.67%), Postives = 51/72 (70.83%), Query Frame = 1
Query:  157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH-IINGKQVEI 369
            KIF+GGLP  TT ++  K+F  +GDI ++V++ DR TG+ RG+GF+T AD +  ++  +D + II+G++  +
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANV 83          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PABP_YEAST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Saccharomyces cerevisiae GN=PAB1 PE=1 SV=4)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 49/200 (24.50%), Postives = 97/200 (48.50%), Query Frame = 1
Query:  106 SKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGSG------QSKDFKTKK--------IFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 657
            S+ + D+      A    +++  +  +TT   F + F K+G I  + + KD   G+ +GFGF+ Y       K +E  +   +NG+++ + R   K         Q + ++ +K        +FV  +  SV +++L+  F+ YG +   +++R  E  +S+GFGFV F + E   + +++ N   +AG  + +  A+ K
Sbjct:  203 SRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDA-DGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRK 400          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PABP_PICST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia stipitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 47/175 (26.86%), Postives = 85/175 (48.57%), Query Frame = 1
Query:  154 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGSGQSKDFKTK----KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 660
            G IFI  L         +  F  +G I    +  D   GQ + FGF+ Y      +  IE+ +  ++N ++V + + I K   +SK  + K     I+V  I    SE++LK  F+ YG +    + +D E  +S+GFGFV ++  E   + + + N  ++ G ++ + +A+ K+
Sbjct:  140 GNIFIKNLHPAIDNKALHDTFSTFGKILSCKVATDDM-GQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEIKANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAE-GKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQKKR 312          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RBMS1_RAT (RNA-binding motif, single-stranded-interacting protein 1 OS=Rattus norvegicus GN=Rbms1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 43/167 (25.75%), Postives = 80/167 (47.90%), Query Frame = 1
Query:  106 SKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGN 606
            + S S +    D  S   ++I GLP +TT     K    YG I  +  + D+ T + +G+GF+ +  P+   K +      +G Q ++ +       Q +D     +++  +P S+ E EL+N    +G+V+  +++RD  +  SRG GF   +S E  + ++   N
Sbjct:   46 NNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALK-ASGVQAQMAKQ------QEQD--PTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRD-SSGTSRGVGFARMESTEKCEAVIGHFN 202          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RBM24_HUMAN (RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 30/72 (41.67%), Postives = 51/72 (70.83%), Query Frame = 1
Query:  157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH-IINGKQVEI 369
            KIF+GGLP  TT A+  K+F  +G+I ++V++ DR TG+ RG+GF+T AD +  ++  +D + II+G++  +
Sbjct:   12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANV 83          
The following BLAST results are available for this feature:
BLAST of DR404964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
RBM38_XENTR3.570e-1141.67RNA-binding protein 38 OS=Xenopus tropicalis GN=rb... [more]
RBM38_CHICK3.570e-1141.67RNA-binding protein 38 OS=Gallus gallus GN=RBM38 P... [more]
RBM24_XENTR3.570e-1141.67RNA-binding protein 24 OS=Xenopus tropicalis GN=rb... [more]
RBM24_CHICK3.570e-1141.67RNA-binding protein 24 OS=Gallus gallus GN=RBM24 P... [more]
RB24B_XENLA3.570e-1141.67RNA-binding protein 24-B OS=Xenopus laevis GN=rbm2... [more]
RB24A_XENLA3.570e-1141.67RNA-binding protein 24-A OS=Xenopus laevis GN=rbm2... [more]
PABP_YEAST3.570e-1124.50Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_PICST3.570e-1126.86Polyadenylate-binding protein, cytoplasmic and nuc... [more]
RBMS1_RAT4.663e-1125.75RNA-binding motif, single-stranded-interacting pro... [more]
RBM24_HUMAN4.663e-1141.67RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE... [more]

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Properties
Property NameValue
Genbank descriptionCSAA-PNP1239P08 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone CSAA-PNP1239P08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404964 ID=DR404964; Name=DR404964; organism=Citrus sinensis; type=EST; length=680bp
GGGGAACCCTGAATTNNNNNTCATCATATTTTCCCCCAAACATTTTCTCT
CCTTTAATCTCCTCCTTTCTCTAGAAAACTCTGTTAACACGACCAAGCTA
TGGGATCCAAATCGAAATCTGATAATCCTCACACCGGCGACGGCGCAAGC
CCCGGGAAGATTTTCATAGGTGGATTGCCTAAAGACACGACCTATGCTAC
GTTTAATAAGCATTTTGGAAAATATGGTGACATAACGGATTCGGTTATAA
TGAAAGATCGGTACACGGGGCAGCCTAGGGGTTTTGGCTTTATAACTTAT
GCCGATCCTTCTGTTGTAGACAAGGTTATTGAAGATACCCACATAATTAA
TGGAAAACAGGTTGAGATTAAAAGAACTATCCCAAAAGGCTCAGGTCAAT
CAAAGGACTTCAAGACAAAGAAGATATTTGTTGGTGGGATACCATCATCA
GTATCTGAAGATGAACTCAAGAATTTCTTCTCCAAATATGGGAAAGTTCT
GGAACACCAAATCATACGTGATCATGAAACTAACCGTTCTAGAGGTTTTG
GTTTTGTAATTTTTGATAGTGAAGAAGTTGTGGATGAAATGTTATCGAAG
GGAAATATGATTGATATGGCTGGTACCCAGGTGGAGATCAAGAAAGCTGA
ACCAAAGAAATCCTCGAACCCTCCACCTCC
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