DR404964

Overview
NameDR404964
Unique NameDR404964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RBMS1_HUMAN (RNA-binding motif, single-stranded-interacting protein 1 OS=Homo sapiens GN=RBMS1 PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 44/167 (26.35%), Postives = 79/167 (47.31%), Query Frame = 1
Query:  106 SKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGN 606
            + S S +    D  S   ++I GLP  TT     K    YG I  +  + D+ T + +G+GF+ +  P+   K +      +G Q ++ +       Q +D     +++  +P S+ E EL+N    +G+V+  +I+RD  +  SRG GF   +S E  + ++   N
Sbjct:   46 NNSSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALK-ASGVQAQMAKQ------QEQD--PTNLYISNLPLSMDEQELENMLKPFGQVISTRILRD-SSGTSRGVGFARMESTEKCEAVIGHFN 202          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RBM39_PONAB (RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 37/151 (24.50%), Postives = 73/151 (48.34%), Query Frame = 1
Query:  214 FGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVV--------DKVIEDTHIINGKQVEIKRTIPKGSGQSKDFK-TKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 639
            F   G + D  ++ DR + + +G  ++ + D S V         +V+    I+   Q E  R     +   K      +++VG +  +++ED L+  F  +G++   Q++ D ET RS+G+GF+ F   E   + L + N  ++AG  +++
Sbjct:  173 FSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RBM39_HUMAN (RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 37/151 (24.50%), Postives = 73/151 (48.34%), Query Frame = 1
Query:  214 FGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVV--------DKVIEDTHIINGKQVEIKRTIPKGSGQSKDFK-TKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 639
            F   G + D  ++ DR + + +G  ++ + D S V         +V+    I+   Q E  R     +   K      +++VG +  +++ED L+  F  +G++   Q++ D ET RS+G+GF+ F   E   + L + N  ++AG  +++
Sbjct:  173 FSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PAP1A_DICDI (Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum GN=pabpc1A PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 46/171 (26.90%), Postives = 76/171 (44.44%), Query Frame = 1
Query:  154 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKR-TIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 657
            G +FI  L K   +      F  +G+I    ++ D      +GFGF+ Y      DK I   +  +ING++V +      K  GQ  + K   +F   +   V  D+LK    +YG++    I+ D +  +S+GFGF  F+S E    ++   N     G  +   +A+ K
Sbjct:   98 GNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSS-KGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMAD-DKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQKK 266          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: SHEP_DROMO (Protein alan shepard OS=Drosophila mojavensis GN=shep PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 42/191 (21.99%), Postives = 92/191 (48.17%), Query Frame = 1
Query:  112 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHI--INGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS--KGNMIDMAGTQVEIKKAE--PKKSS 666
            +++ N   G+  S   ++I GL + TT         +YG I  +  + D+ T + +G+GF+ +  P+  +  ++      +  +  ++   +       ++     +++  +P    E +L+   +K+G+V+  +I+RD + N S+G GF   +S E  ++++    GN I  A   + +K A+  PKK +
Sbjct:  215 AQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLINMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAYAEGAVKGLQAKGVQAQMAKVGIWVLHRPAIQQEQDPTNLYIANLPPHFKETDLEAMLAKFGQVVSTRILRDQQMN-SKGVGFARMESREKCEQIIQMFNGNTITGAKDPLLVKFADGGPKKKN 404          
The following BLAST results are available for this feature:
BLAST of DR404964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
RBMS1_HUMAN6.090e-1126.35RNA-binding motif, single-stranded-interacting pro... [more]
RBM39_PONAB6.090e-1124.50RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE... [more]
RBM39_HUMAN6.090e-1124.50RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE... [more]
PAP1A_DICDI6.090e-1126.90Polyadenylate-binding protein 1-A OS=Dictyostelium... [more]
SHEP_DROMO7.954e-1121.99Protein alan shepard OS=Drosophila mojavensis GN=s... [more]

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Properties
Property NameValue
Genbank descriptionCSAA-PNP1239P08 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone CSAA-PNP1239P08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404964 ID=DR404964; Name=DR404964; organism=Citrus sinensis; type=EST; length=680bp
GGGGAACCCTGAATTNNNNNTCATCATATTTTCCCCCAAACATTTTCTCT
CCTTTAATCTCCTCCTTTCTCTAGAAAACTCTGTTAACACGACCAAGCTA
TGGGATCCAAATCGAAATCTGATAATCCTCACACCGGCGACGGCGCAAGC
CCCGGGAAGATTTTCATAGGTGGATTGCCTAAAGACACGACCTATGCTAC
GTTTAATAAGCATTTTGGAAAATATGGTGACATAACGGATTCGGTTATAA
TGAAAGATCGGTACACGGGGCAGCCTAGGGGTTTTGGCTTTATAACTTAT
GCCGATCCTTCTGTTGTAGACAAGGTTATTGAAGATACCCACATAATTAA
TGGAAAACAGGTTGAGATTAAAAGAACTATCCCAAAAGGCTCAGGTCAAT
CAAAGGACTTCAAGACAAAGAAGATATTTGTTGGTGGGATACCATCATCA
GTATCTGAAGATGAACTCAAGAATTTCTTCTCCAAATATGGGAAAGTTCT
GGAACACCAAATCATACGTGATCATGAAACTAACCGTTCTAGAGGTTTTG
GTTTTGTAATTTTTGATAGTGAAGAAGTTGTGGATGAAATGTTATCGAAG
GGAAATATGATTGATATGGCTGGTACCCAGGTGGAGATCAAGAAAGCTGA
ACCAAAGAAATCCTCGAACCCTCCACCTCC
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