DR404964
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RBMS1_HUMAN (RNA-binding motif, single-stranded-interacting protein 1 OS=Homo sapiens GN=RBMS1 PE=1 SV=3) HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11 Identity = 44/167 (26.35%), Postives = 79/167 (47.31%), Query Frame = 1 Query: 106 SKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGN 606 + S S + D S ++I GLP TT K YG I + + D+ T + +G+GF+ + P+ K + +G Q ++ + Q +D +++ +P S+ E EL+N +G+V+ +I+RD + SRG GF +S E + ++ N Sbjct: 46 NNSSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALK-ASGVQAQMAKQ------QEQD--PTNLYISNLPLSMDEQELENMLKPFGQVISTRILRD-SSGTSRGVGFARMESTEKCEAVIGHFN 202
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RBM39_PONAB (RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11 Identity = 37/151 (24.50%), Postives = 73/151 (48.34%), Query Frame = 1 Query: 214 FGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVV--------DKVIEDTHIINGKQVEIKRTIPKGSGQSKDFK-TKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 639 F G + D ++ DR + + +G ++ + D S V +V+ I+ Q E R + K +++VG + +++ED L+ F +G++ Q++ D ET RS+G+GF+ F E + L + N ++AG +++ Sbjct: 173 FSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RBM39_HUMAN (RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11 Identity = 37/151 (24.50%), Postives = 73/151 (48.34%), Query Frame = 1 Query: 214 FGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVV--------DKVIEDTHIINGKQVEIKRTIPKGSGQSKDFK-TKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 639 F G + D ++ DR + + +G ++ + D S V +V+ I+ Q E R + K +++VG + +++ED L+ F +G++ Q++ D ET RS+G+GF+ F E + L + N ++AG +++ Sbjct: 173 FSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PAP1A_DICDI (Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum GN=pabpc1A PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11 Identity = 46/171 (26.90%), Postives = 76/171 (44.44%), Query Frame = 1 Query: 154 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKR-TIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 657 G +FI L K + F +G+I ++ D +GFGF+ Y DK I + +ING++V + K GQ + K +F + V D+LK +YG++ I+ D + +S+GFGF F+S E ++ N G + +A+ K Sbjct: 98 GNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSS-KGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMAD-DKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQKK 266
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: SHEP_DROMO (Protein alan shepard OS=Drosophila mojavensis GN=shep PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11 Identity = 42/191 (21.99%), Postives = 92/191 (48.17%), Query Frame = 1 Query: 112 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHI--INGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS--KGNMIDMAGTQVEIKKAE--PKKSS 666 +++ N G+ S ++I GL + TT +YG I + + D+ T + +G+GF+ + P+ + ++ + + ++ + ++ +++ +P E +L+ +K+G+V+ +I+RD + N S+G GF +S E ++++ GN I A + +K A+ PKK + Sbjct: 215 AQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLINMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAYAEGAVKGLQAKGVQAQMAKVGIWVLHRPAIQQEQDPTNLYIANLPPHFKETDLEAMLAKFGQVVSTRILRDQQMN-SKGVGFARMESREKCEQIIQMFNGNTITGAKDPLLVKFADGGPKKKN 404 The following BLAST results are available for this feature:
BLAST of DR404964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 155
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Sequences
The
following sequences are available for this feature:
EST sequence >DR404964 ID=DR404964; Name=DR404964; organism=Citrus sinensis; type=EST; length=680bpback to top |