DR404964

Overview
NameDR404964
Unique NameDR404964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROA1_PANTR (Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes GN=HNRNPA1 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.008e-26
Identity = 69/187 (36.90%), Postives = 107/187 (57.22%), Query Frame = 1
Query:  112 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKKAEPKK 660
            SKS++P   +     K+FIGGL  +TT  +   HF ++G +TD V+M+D  T + RGFGF+TYA    VD  +    H ++G+ VE KR + +   Q        KKIFVGGI     E  L+++F +YGK+   +I+ D  + + RGF FV FD  + VD+ ++ K + ++  G   E++KA  K+
Sbjct:    2 SKSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVN--GHNCEVRKALSKQ 184          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROA1_MOUSE (Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus GN=Hnrnpa1 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.008e-26
Identity = 69/187 (36.90%), Postives = 107/187 (57.22%), Query Frame = 1
Query:  112 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKKAEPKK 660
            SKS++P   +     K+FIGGL  +TT  +   HF ++G +TD V+M+D  T + RGFGF+TYA    VD  +    H ++G+ VE KR + +   Q        KKIFVGGI     E  L+++F +YGK+   +I+ D  + + RGF FV FD  + VD+ ++ K + ++  G   E++KA  K+
Sbjct:    2 SKSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVN--GHNCEVRKALSKQ 184          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROA1_HUMAN (Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens GN=HNRNPA1 PE=1 SV=5)

HSP 1 Score: 118.627 bits (296), Expect = 3.008e-26
Identity = 69/187 (36.90%), Postives = 107/187 (57.22%), Query Frame = 1
Query:  112 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKKAEPKK 660
            SKS++P   +     K+FIGGL  +TT  +   HF ++G +TD V+M+D  T + RGFGF+TYA    VD  +    H ++G+ VE KR + +   Q        KKIFVGGI     E  L+++F +YGK+   +I+ D  + + RGF FV FD  + VD+ ++ K + ++  G   E++KA  K+
Sbjct:    2 SKSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVN--GHNCEVRKALSKQ 184          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROA1_BOVIN (Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.008e-26
Identity = 69/187 (36.90%), Postives = 107/187 (57.22%), Query Frame = 1
Query:  112 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKKAEPKK 660
            SKS++P   +     K+FIGGL  +TT  +   HF ++G +TD V+M+D  T + RGFGF+TYA    VD  +    H ++G+ VE KR + +   Q        KKIFVGGI     E  L+++F +YGK+   +I+ D  + + RGF FV FD  + VD+ ++ K + ++  G   E++KA  K+
Sbjct:    2 SKSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVN--GHNCEVRKALSKQ 184          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RB97D_DROME (Ribonucleoprotein RB97D OS=Drosophila melanogaster GN=Rb97D PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.008e-26
Identity = 65/168 (38.69%), Postives = 102/168 (60.71%), Query Frame = 1
Query:  157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED-THIINGKQVEIKRTIPKGSGQSKD--FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKKA 648
            K+FIGGL   TT       +G++G + D V+M+D  T + RGFGFITY    +VD+  E+  HII+GK VE KR +P+   +S++     KK+FVGG+  +  E+ L+ +F ++G V+  +++ D  T + RGF FV FD  + VD+ +L K + I      V++KK+
Sbjct:   33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQENRPHIIDGKTVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILKKQHAIKY--VHVDVKKS 198          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RA1L3_HUMAN (Putative heterogeneous nuclear ribonucleoprotein A1-like protein 3 OS=Homo sapiens GN=HNRPA1L3 PE=5 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.008e-26
Identity = 69/187 (36.90%), Postives = 107/187 (57.22%), Query Frame = 1
Query:  112 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKKAEPKK 660
            SKS++P   +     K+FIGGL  +TT  +   HF ++G +TD V+M+D  T + RGFGF+TYA    VD  +    H ++G+ VE KR + +   Q        KKIFVGGI     E  L+++F +YGK+   +I+ D  + + RGF FV FD  + VD+ ++ K + ++  G   E++KA  K+
Sbjct:    2 SKSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVN--GHNCEVRKALSKQ 184          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROA1_RAT (Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus GN=Hnrnpa1 PE=1 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 5.132e-26
Identity = 68/183 (37.16%), Postives = 105/183 (57.38%), Query Frame = 1
Query:  112 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKKA 648
            SKS++P   +     K+FIGGL  +TT  +   HF ++G +TD V+M+D  T + RGFGF+TYA    VD  +    H ++G+ VE KR + +   Q        KKIFVGGI     E  L+++F +YGK+   +I+ D  + + RGF FV FD  + VD+ ++ K + ++  G   E++KA
Sbjct:    2 SKSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVN--GHNCEVRKA 180          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROA1_MACMU (Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta GN=HNRNPA1 PE=2 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 5.132e-26
Identity = 69/187 (36.90%), Postives = 106/187 (56.68%), Query Frame = 1
Query:  112 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKKAEPKK 660
            SKS++P   +     K+FIGGL  +TT  +   HF ++G +TD V+M+D  T + RGFGF+TYA    VD  +    H ++G+ VE KR + +   Q        KKIFVGGI     E  L+++F +YGK+   +I+ D  + + RGF FV FD    VD+ ++ K + ++  G   E++KA  K+
Sbjct:    2 SKSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHTVN--GHNCEVRKALSKQ 184          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROAA_HUMAN (Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens GN=HNRNPAB PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.493e-25
Identity = 67/192 (34.90%), Postives = 112/192 (58.33%), Query Frame = 1
Query:   91 DQAMGSKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED-THIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGI-PSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 660
            DQ   SK++ D          GK+F+GGL  DT+      +F K+G++ D  I  D  TG+ RGFGFI + D + V+KV++   H ++G+ ++     PK +   K    KKIFVGG+ P S +E++++ +F ++G++   ++  D + N+ RGF F+ F  EE V ++L K     ++G++ EIK A+PK+
Sbjct:   57 DQINASKNEED---------AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVID-----PKKAMAMKKDPVKKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK-KFHTVSGSKCEIKVAQPKE 233          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROAA_MOUSE (Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus GN=Hnrnpab PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.547e-25
Identity = 65/191 (34.03%), Postives = 110/191 (57.59%), Query Frame = 1
Query:   91 DQAMGSKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED-THIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 660
            DQ   SK++ D          GK+F+GGL  DT+      +F K+G++ D  I  D  TG+ RGFGFI + D S V+KV++   H ++G+ ++     PK +   K    KKIFVGG+    +E++++ +F ++G++   ++  D + N+ RGF F+ F  E+ V ++L K     ++G++ EIK A+PK+
Sbjct:   63 DQINASKNEED---------AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVID-----PKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK-KFHTVSGSKCEIKVAQPKE 238          
The following BLAST results are available for this feature:
BLAST of DR404964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
ROA1_PANTR3.008e-2636.90Heterogeneous nuclear ribonucleoprotein A1 OS=Pan ... [more]
ROA1_MOUSE3.008e-2636.90Heterogeneous nuclear ribonucleoprotein A1 OS=Mus ... [more]
ROA1_HUMAN3.008e-2636.90Heterogeneous nuclear ribonucleoprotein A1 OS=Homo... [more]
ROA1_BOVIN3.008e-2636.90Heterogeneous nuclear ribonucleoprotein A1 OS=Bos ... [more]
RB97D_DROME3.008e-2638.69Ribonucleoprotein RB97D OS=Drosophila melanogaster... [more]
RA1L3_HUMAN3.008e-2636.90Putative heterogeneous nuclear ribonucleoprotein A... [more]
ROA1_RAT5.132e-2637.16Heterogeneous nuclear ribonucleoprotein A1 OS=Ratt... [more]
ROA1_MACMU5.132e-2636.90Heterogeneous nuclear ribonucleoprotein A1 OS=Maca... [more]
ROAA_HUMAN1.493e-2534.90Heterogeneous nuclear ribonucleoprotein A/B OS=Hom... [more]
ROAA_MOUSE2.547e-2534.03Heterogeneous nuclear ribonucleoprotein A/B OS=Mus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAA-PNP1239P08 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone CSAA-PNP1239P08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404964 ID=DR404964; Name=DR404964; organism=Citrus sinensis; type=EST; length=680bp
GGGGAACCCTGAATTNNNNNTCATCATATTTTCCCCCAAACATTTTCTCT
CCTTTAATCTCCTCCTTTCTCTAGAAAACTCTGTTAACACGACCAAGCTA
TGGGATCCAAATCGAAATCTGATAATCCTCACACCGGCGACGGCGCAAGC
CCCGGGAAGATTTTCATAGGTGGATTGCCTAAAGACACGACCTATGCTAC
GTTTAATAAGCATTTTGGAAAATATGGTGACATAACGGATTCGGTTATAA
TGAAAGATCGGTACACGGGGCAGCCTAGGGGTTTTGGCTTTATAACTTAT
GCCGATCCTTCTGTTGTAGACAAGGTTATTGAAGATACCCACATAATTAA
TGGAAAACAGGTTGAGATTAAAAGAACTATCCCAAAAGGCTCAGGTCAAT
CAAAGGACTTCAAGACAAAGAAGATATTTGTTGGTGGGATACCATCATCA
GTATCTGAAGATGAACTCAAGAATTTCTTCTCCAAATATGGGAAAGTTCT
GGAACACCAAATCATACGTGATCATGAAACTAACCGTTCTAGAGGTTTTG
GTTTTGTAATTTTTGATAGTGAAGAAGTTGTGGATGAAATGTTATCGAAG
GGAAATATGATTGATATGGCTGGTACCCAGGTGGAGATCAAGAAAGCTGA
ACCAAAGAAATCCTCGAACCCTCCACCTCC
back to top