DR404964
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROA1_PANTR (Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes GN=HNRNPA1 PE=2 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.008e-26 Identity = 69/187 (36.90%), Postives = 107/187 (57.22%), Query Frame = 1 Query: 112 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKKAEPKK 660 SKS++P + K+FIGGL +TT + HF ++G +TD V+M+D T + RGFGF+TYA VD + H ++G+ VE KR + + Q KKIFVGGI E L+++F +YGK+ +I+ D + + RGF FV FD + VD+ ++ K + ++ G E++KA K+ Sbjct: 2 SKSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVN--GHNCEVRKALSKQ 184
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROA1_MOUSE (Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus GN=Hnrnpa1 PE=1 SV=2) HSP 1 Score: 118.627 bits (296), Expect = 3.008e-26 Identity = 69/187 (36.90%), Postives = 107/187 (57.22%), Query Frame = 1 Query: 112 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKKAEPKK 660 SKS++P + K+FIGGL +TT + HF ++G +TD V+M+D T + RGFGF+TYA VD + H ++G+ VE KR + + Q KKIFVGGI E L+++F +YGK+ +I+ D + + RGF FV FD + VD+ ++ K + ++ G E++KA K+ Sbjct: 2 SKSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVN--GHNCEVRKALSKQ 184
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROA1_HUMAN (Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens GN=HNRNPA1 PE=1 SV=5) HSP 1 Score: 118.627 bits (296), Expect = 3.008e-26 Identity = 69/187 (36.90%), Postives = 107/187 (57.22%), Query Frame = 1 Query: 112 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKKAEPKK 660 SKS++P + K+FIGGL +TT + HF ++G +TD V+M+D T + RGFGF+TYA VD + H ++G+ VE KR + + Q KKIFVGGI E L+++F +YGK+ +I+ D + + RGF FV FD + VD+ ++ K + ++ G E++KA K+ Sbjct: 2 SKSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVN--GHNCEVRKALSKQ 184
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROA1_BOVIN (Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1 PE=1 SV=2) HSP 1 Score: 118.627 bits (296), Expect = 3.008e-26 Identity = 69/187 (36.90%), Postives = 107/187 (57.22%), Query Frame = 1 Query: 112 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKKAEPKK 660 SKS++P + K+FIGGL +TT + HF ++G +TD V+M+D T + RGFGF+TYA VD + H ++G+ VE KR + + Q KKIFVGGI E L+++F +YGK+ +I+ D + + RGF FV FD + VD+ ++ K + ++ G E++KA K+ Sbjct: 2 SKSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVN--GHNCEVRKALSKQ 184
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RB97D_DROME (Ribonucleoprotein RB97D OS=Drosophila melanogaster GN=Rb97D PE=1 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.008e-26 Identity = 65/168 (38.69%), Postives = 102/168 (60.71%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED-THIINGKQVEIKRTIPKGSGQSKD--FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKKA 648 K+FIGGL TT +G++G + D V+M+D T + RGFGFITY +VD+ E+ HII+GK VE KR +P+ +S++ KK+FVGG+ + E+ L+ +F ++G V+ +++ D T + RGF FV FD + VD+ +L K + I V++KK+ Sbjct: 33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQENRPHIIDGKTVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILKKQHAIKY--VHVDVKKS 198
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RA1L3_HUMAN (Putative heterogeneous nuclear ribonucleoprotein A1-like protein 3 OS=Homo sapiens GN=HNRPA1L3 PE=5 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.008e-26 Identity = 69/187 (36.90%), Postives = 107/187 (57.22%), Query Frame = 1 Query: 112 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKKAEPKK 660 SKS++P + K+FIGGL +TT + HF ++G +TD V+M+D T + RGFGF+TYA VD + H ++G+ VE KR + + Q KKIFVGGI E L+++F +YGK+ +I+ D + + RGF FV FD + VD+ ++ K + ++ G E++KA K+ Sbjct: 2 SKSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVN--GHNCEVRKALSKQ 184
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROA1_RAT (Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus GN=Hnrnpa1 PE=1 SV=3) HSP 1 Score: 117.857 bits (294), Expect = 5.132e-26 Identity = 68/183 (37.16%), Postives = 105/183 (57.38%), Query Frame = 1 Query: 112 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKKA 648 SKS++P + K+FIGGL +TT + HF ++G +TD V+M+D T + RGFGF+TYA VD + H ++G+ VE KR + + Q KKIFVGGI E L+++F +YGK+ +I+ D + + RGF FV FD + VD+ ++ K + ++ G E++KA Sbjct: 2 SKSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVN--GHNCEVRKA 180
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROA1_MACMU (Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta GN=HNRNPA1 PE=2 SV=3) HSP 1 Score: 117.857 bits (294), Expect = 5.132e-26 Identity = 69/187 (36.90%), Postives = 106/187 (56.68%), Query Frame = 1 Query: 112 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSGQ--SKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKKAEPKK 660 SKS++P + K+FIGGL +TT + HF ++G +TD V+M+D T + RGFGF+TYA VD + H ++G+ VE KR + + Q KKIFVGGI E L+++F +YGK+ +I+ D + + RGF FV FD VD+ ++ K + ++ G E++KA K+ Sbjct: 2 SKSESPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHTVN--GHNCEVRKALSKQ 184
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROAA_HUMAN (Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens GN=HNRNPAB PE=1 SV=2) HSP 1 Score: 116.316 bits (290), Expect = 1.493e-25 Identity = 67/192 (34.90%), Postives = 112/192 (58.33%), Query Frame = 1 Query: 91 DQAMGSKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED-THIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGI-PSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 660 DQ SK++ D GK+F+GGL DT+ +F K+G++ D I D TG+ RGFGFI + D + V+KV++ H ++G+ ++ PK + K KKIFVGG+ P S +E++++ +F ++G++ ++ D + N+ RGF F+ F EE V ++L K ++G++ EIK A+PK+ Sbjct: 57 DQINASKNEED---------AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVID-----PKKAMAMKKDPVKKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK-KFHTVSGSKCEIKVAQPKE 233
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROAA_MOUSE (Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus GN=Hnrnpab PE=1 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.547e-25 Identity = 65/191 (34.03%), Postives = 110/191 (57.59%), Query Frame = 1 Query: 91 DQAMGSKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED-THIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 660 DQ SK++ D GK+F+GGL DT+ +F K+G++ D I D TG+ RGFGFI + D S V+KV++ H ++G+ ++ PK + K KKIFVGG+ +E++++ +F ++G++ ++ D + N+ RGF F+ F E+ V ++L K ++G++ EIK A+PK+ Sbjct: 63 DQINASKNEED---------AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVID-----PKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK-KFHTVSGSKCEIKVAQPKE 238 The following BLAST results are available for this feature:
BLAST of DR404964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 155
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Sequences
The
following sequences are available for this feature:
EST sequence >DR404964 ID=DR404964; Name=DR404964; organism=Citrus sinensis; type=EST; length=680bpback to top |