DR404964

Overview
NameDR404964
Unique NameDR404964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROA2_PONAB (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii GN=HNRNPA2B1 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.674e-25
Identity = 65/168 (38.69%), Postives = 104/168 (61.90%), Query Frame = 1
Query:  157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKG-SGQSKDFKT-KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKKA 648
            K+FIGGL  +TT  +   ++ ++G +TD V+M+D  + + RGFGF+T++  + VD  +    H I+G+ VE KR + +  SG+     T KK+FVGGI     E  L+++F +YGK+   +II D ++ + RGFGFV FD  + VD+ +L K + I+  G   E++KA
Sbjct:   22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKHHTIN--GHNAEVRKA 187          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROA2_RAT (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus norvegicus GN=Hnrnpa2b1 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.410e-25
Identity = 65/168 (38.69%), Postives = 104/168 (61.90%), Query Frame = 1
Query:  157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKG-SGQSKDFKT-KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEM-LSKGNMIDMAGTQVEIKKA 648
            K+FIGGL  +TT  +   ++ ++G +TD V+M+D  + + RGFGF+T++  + VD  +    H I+G+ VE KR + +  SG+     T KK+FVGGI     E  L+++F +YGK+   +II D ++ + RGFGFV FD  + VD++ L K + I+  G   E++KA
Sbjct:   22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIFLQKYHTIN--GHNAEVRKA 187          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROA2_MOUSE (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus GN=Hnrnpa2b1 PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 7.410e-25
Identity = 65/168 (38.69%), Postives = 104/168 (61.90%), Query Frame = 1
Query:  157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKG-SGQSKDFKT-KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKKA 648
            K+FIGGL  +TT  +   ++ ++G +TD V+M+D  + + RGFGF+T++  + VD  +    H I+G+ VE KR + +  SG+     T KK+FVGGI     E  L+++F +YGK+   +II D ++ + RGFGFV FD  + VD+ +L K + I+  G   E++KA
Sbjct:   22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTIN--GHNAEVRKA 187          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROA2_HUMAN (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 7.410e-25
Identity = 65/168 (38.69%), Postives = 104/168 (61.90%), Query Frame = 1
Query:  157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKG-SGQSKDFKT-KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKKA 648
            K+FIGGL  +TT  +   ++ ++G +TD V+M+D  + + RGFGF+T++  + VD  +    H I+G+ VE KR + +  SG+     T KK+FVGGI     E  L+++F +YGK+   +II D ++ + RGFGFV FD  + VD+ +L K + I+  G   E++KA
Sbjct:   22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTIN--GHNAEVRKA 187          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROA2_BOVIN (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus GN=HNRNPA2B1 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.410e-25
Identity = 65/168 (38.69%), Postives = 104/168 (61.90%), Query Frame = 1
Query:  157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKG-SGQSKDFKT-KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKKA 648
            K+FIGGL  +TT  +   ++ ++G +TD V+M+D  + + RGFGF+T++  + VD  +    H I+G+ VE KR + +  SG+     T KK+FVGGI     E  L+++F +YGK+   +II D ++ + RGFGFV FD  + VD+ +L K + I+  G   E++KA
Sbjct:   10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTIN--GHNAEVRKA 175          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROA2_SAGOE (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus oedipus GN=HNRNPA2B1 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.678e-25
Identity = 65/168 (38.69%), Postives = 104/168 (61.90%), Query Frame = 1
Query:  157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKG-SGQSKDFKT-KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKKA 648
            K+FIGGL   TT  +   ++ ++G +TD V+M+D  + + RGFGF+T++  + VD  +    H I+G+ VE KR + +  SG+     T KK+FVGGI     E  L+++F++YGK+   +II D ++ + RGFGFV FD  + VD+ +L K + I+  G   E++KA
Sbjct:   10 KLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTIN--GHNAEVRKA 175          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RO32_XENLA (Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.264e-24
Identity = 63/172 (36.63%), Postives = 101/172 (58.72%), Query Frame = 1
Query:  157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKKAEPKK 660
            K+FIGGL  +TT  +  +HF ++G +TD V+M+D  T + RGFGF+TY+    VD  +    H ++G+ VE KR + +   +        KKIFVGGI     E  L+++F  YGK+   +++ D ++ + RGF FV FD  + VD+ ++ K + I++     E+KKA  K+
Sbjct:   28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSARPHKVDGRVVEPKRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINL--HNCEVKKALSKQ 197          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROA1_XENLA (Heterogeneous nuclear ribonucleoproteins A1 homolog OS=Xenopus laevis GN=hnrnpa1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.156e-24
Identity = 60/163 (36.81%), Postives = 95/163 (58.28%), Query Frame = 1
Query:  157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQV 633
            K+FIGGL  +TT  +  +HF ++G +TD V+M+D  + + RGFGF+TY     VD  +    H ++G+ VE KR + +   S        KKIFVGGI     ED L+ +F +YGK+   +I+ D  + + RGF FV F+  + VD+ ++ K + ++   +QV
Sbjct:   15 KLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMTARPHKVDGRVVEPKRAVSREDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQKYHTVNNHNSQV 177          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RO31_XENLA (Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.156e-24
Identity = 63/172 (36.63%), Postives = 100/172 (58.14%), Query Frame = 1
Query:  157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVD-KVIEDTHIINGKQVEIKRTIPK--GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKKAEPKK 660
            K+FIGGL  +TT  +  +HF ++G +TD V+M+D  T + RGFGF+TY+    VD  +    H ++G+ VE KR + +   +        KKIFVGGI     E  L+++   YGK+   +++ D ++ + RGF FV FD  + VD+ ++ K + I+  G   E+KKA  K+
Sbjct:   28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSARPHKVDGRVVEPKRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTIN--GHNCEVKKALSKQ 197          

HSP 2 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 35/98 (35.71%), Postives = 54/98 (55.10%), Query Frame = 1
Query:  112 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGSGQS 402
            S+ D+   G   +  KIF+GG+ +DT       +   YG I    +M+DR +G+ RGF F+T+ D   VDK V++  H ING   E+K+ + K   Q+
Sbjct:  104 SREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQT 201          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: HNRDL_MOUSE (Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus GN=Hnrpdl PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.156e-24
Identity = 64/189 (33.86%), Postives = 103/189 (54.50%), Query Frame = 1
Query:   97 AMGSKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 660
            A GSK  +      DG    K+FIGGL  DT+     ++  ++G++ D  I  D  TG+ RGFGF+ + D + VDKV+E   H ++GK ++ KR              KK+FVGG+    SE+++K +F  +G++   ++  D +TN  RGF F+ +  EE V ++L +     +   + EIK A+PK+
Sbjct:   14 AEGSKINASKNQQDDG----KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKR----AKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLL-ESRYHQIGSGKCEIKVAQPKE 193          
The following BLAST results are available for this feature:
BLAST of DR404964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
ROA2_PONAB5.674e-2538.69Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
ROA2_RAT7.410e-2538.69Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
ROA2_MOUSE7.410e-2538.69Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
ROA2_HUMAN7.410e-2538.69Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
ROA2_BOVIN7.410e-2538.69Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
ROA2_SAGOE9.678e-2538.69Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
RO32_XENLA1.264e-2436.63Heterogeneous nuclear ribonucleoprotein A3 homolog... [more]
ROA1_XENLA2.156e-2436.81Heterogeneous nuclear ribonucleoproteins A1 homolo... [more]
RO31_XENLA2.156e-2436.63Heterogeneous nuclear ribonucleoprotein A3 homolog... [more]
HNRDL_MOUSE2.156e-2433.86Heterogeneous nuclear ribonucleoprotein D-like OS=... [more]

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Properties
Property NameValue
Genbank descriptionCSAA-PNP1239P08 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone CSAA-PNP1239P08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404964 ID=DR404964; Name=DR404964; organism=Citrus sinensis; type=EST; length=680bp
GGGGAACCCTGAATTNNNNNTCATCATATTTTCCCCCAAACATTTTCTCT
CCTTTAATCTCCTCCTTTCTCTAGAAAACTCTGTTAACACGACCAAGCTA
TGGGATCCAAATCGAAATCTGATAATCCTCACACCGGCGACGGCGCAAGC
CCCGGGAAGATTTTCATAGGTGGATTGCCTAAAGACACGACCTATGCTAC
GTTTAATAAGCATTTTGGAAAATATGGTGACATAACGGATTCGGTTATAA
TGAAAGATCGGTACACGGGGCAGCCTAGGGGTTTTGGCTTTATAACTTAT
GCCGATCCTTCTGTTGTAGACAAGGTTATTGAAGATACCCACATAATTAA
TGGAAAACAGGTTGAGATTAAAAGAACTATCCCAAAAGGCTCAGGTCAAT
CAAAGGACTTCAAGACAAAGAAGATATTTGTTGGTGGGATACCATCATCA
GTATCTGAAGATGAACTCAAGAATTTCTTCTCCAAATATGGGAAAGTTCT
GGAACACCAAATCATACGTGATCATGAAACTAACCGTTCTAGAGGTTTTG
GTTTTGTAATTTTTGATAGTGAAGAAGTTGTGGATGAAATGTTATCGAAG
GGAAATATGATTGATATGGCTGGTACCCAGGTGGAGATCAAGAAAGCTGA
ACCAAAGAAATCCTCGAACCCTCCACCTCC
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