DR404964
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROA2_PONAB (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii GN=HNRNPA2B1 PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 5.674e-25 Identity = 65/168 (38.69%), Postives = 104/168 (61.90%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKG-SGQSKDFKT-KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKKA 648 K+FIGGL +TT + ++ ++G +TD V+M+D + + RGFGF+T++ + VD + H I+G+ VE KR + + SG+ T KK+FVGGI E L+++F +YGK+ +II D ++ + RGFGFV FD + VD+ +L K + I+ G E++KA Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKHHTIN--GHNAEVRKA 187
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROA2_RAT (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus norvegicus GN=Hnrnpa2b1 PE=1 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 7.410e-25 Identity = 65/168 (38.69%), Postives = 104/168 (61.90%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKG-SGQSKDFKT-KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEM-LSKGNMIDMAGTQVEIKKA 648 K+FIGGL +TT + ++ ++G +TD V+M+D + + RGFGF+T++ + VD + H I+G+ VE KR + + SG+ T KK+FVGGI E L+++F +YGK+ +II D ++ + RGFGFV FD + VD++ L K + I+ G E++KA Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIFLQKYHTIN--GHNAEVRKA 187
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROA2_MOUSE (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus GN=Hnrnpa2b1 PE=1 SV=2) HSP 1 Score: 114.005 bits (284), Expect = 7.410e-25 Identity = 65/168 (38.69%), Postives = 104/168 (61.90%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKG-SGQSKDFKT-KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKKA 648 K+FIGGL +TT + ++ ++G +TD V+M+D + + RGFGF+T++ + VD + H I+G+ VE KR + + SG+ T KK+FVGGI E L+++F +YGK+ +II D ++ + RGFGFV FD + VD+ +L K + I+ G E++KA Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTIN--GHNAEVRKA 187
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROA2_HUMAN (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2) HSP 1 Score: 114.005 bits (284), Expect = 7.410e-25 Identity = 65/168 (38.69%), Postives = 104/168 (61.90%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKG-SGQSKDFKT-KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKKA 648 K+FIGGL +TT + ++ ++G +TD V+M+D + + RGFGF+T++ + VD + H I+G+ VE KR + + SG+ T KK+FVGGI E L+++F +YGK+ +II D ++ + RGFGFV FD + VD+ +L K + I+ G E++KA Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTIN--GHNAEVRKA 187
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROA2_BOVIN (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus GN=HNRNPA2B1 PE=2 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 7.410e-25 Identity = 65/168 (38.69%), Postives = 104/168 (61.90%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKG-SGQSKDFKT-KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKKA 648 K+FIGGL +TT + ++ ++G +TD V+M+D + + RGFGF+T++ + VD + H I+G+ VE KR + + SG+ T KK+FVGGI E L+++F +YGK+ +II D ++ + RGFGFV FD + VD+ +L K + I+ G E++KA Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTIN--GHNAEVRKA 175
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROA2_SAGOE (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus oedipus GN=HNRNPA2B1 PE=1 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 9.678e-25 Identity = 65/168 (38.69%), Postives = 104/168 (61.90%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT-HIINGKQVEIKRTIPKG-SGQSKDFKT-KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKKA 648 K+FIGGL TT + ++ ++G +TD V+M+D + + RGFGF+T++ + VD + H I+G+ VE KR + + SG+ T KK+FVGGI E L+++F++YGK+ +II D ++ + RGFGFV FD + VD+ +L K + I+ G E++KA Sbjct: 10 KLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTIN--GHNAEVRKA 175
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RO32_XENLA (Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus laevis PE=2 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.264e-24 Identity = 63/172 (36.63%), Postives = 101/172 (58.72%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKKAEPKK 660 K+FIGGL +TT + +HF ++G +TD V+M+D T + RGFGF+TY+ VD + H ++G+ VE KR + + + KKIFVGGI E L+++F YGK+ +++ D ++ + RGF FV FD + VD+ ++ K + I++ E+KKA K+ Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSARPHKVDGRVVEPKRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINL--HNCEVKKALSKQ 197
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROA1_XENLA (Heterogeneous nuclear ribonucleoproteins A1 homolog OS=Xenopus laevis GN=hnrnpa1 PE=2 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.156e-24 Identity = 60/163 (36.81%), Postives = 95/163 (58.28%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQV 633 K+FIGGL +TT + +HF ++G +TD V+M+D + + RGFGF+TY VD + H ++G+ VE KR + + S KKIFVGGI ED L+ +F +YGK+ +I+ D + + RGF FV F+ + VD+ ++ K + ++ +QV Sbjct: 15 KLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMTARPHKVDGRVVEPKRAVSREDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQKYHTVNNHNSQV 177
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RO31_XENLA (Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus laevis PE=2 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.156e-24 Identity = 63/172 (36.63%), Postives = 100/172 (58.14%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVD-KVIEDTHIINGKQVEIKRTIPK--GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKKAEPKK 660 K+FIGGL +TT + +HF ++G +TD V+M+D T + RGFGF+TY+ VD + H ++G+ VE KR + + + KKIFVGGI E L+++ YGK+ +++ D ++ + RGF FV FD + VD+ ++ K + I+ G E+KKA K+ Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSARPHKVDGRVVEPKRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTIN--GHNCEVKKALSKQ 197 HSP 2 Score: 68.5514 bits (166), Expect = 3.570e-11 Identity = 35/98 (35.71%), Postives = 54/98 (55.10%), Query Frame = 1 Query: 112 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDK-VIEDTHIINGKQVEIKRTIPKGSGQS 402 S+ D+ G + KIF+GG+ +DT + YG I +M+DR +G+ RGF F+T+ D VDK V++ H ING E+K+ + K Q+ Sbjct: 104 SREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQT 201
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: HNRDL_MOUSE (Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus GN=Hnrpdl PE=1 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.156e-24 Identity = 64/189 (33.86%), Postives = 103/189 (54.50%), Query Frame = 1 Query: 97 AMGSKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 660 A GSK + DG K+FIGGL DT+ ++ ++G++ D I D TG+ RGFGF+ + D + VDKV+E H ++GK ++ KR KK+FVGG+ SE+++K +F +G++ ++ D +TN RGF F+ + EE V ++L + + + EIK A+PK+ Sbjct: 14 AEGSKINASKNQQDDG----KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKR----AKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLL-ESRYHQIGSGKCEIKVAQPKE 193 The following BLAST results are available for this feature:
BLAST of DR404964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 155
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Sequences
The
following sequences are available for this feature:
EST sequence >DR404964 ID=DR404964; Name=DR404964; organism=Citrus sinensis; type=EST; length=680bpback to top |