DR404964
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: HNRDL_HUMAN (Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens GN=HNRPDL PE=1 SV=3) HSP 1 Score: 112.464 bits (280), Expect = 2.156e-24 Identity = 64/189 (33.86%), Postives = 103/189 (54.50%), Query Frame = 1 Query: 97 AMGSKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 660 A GSK + DG K+FIGGL DT+ ++ ++G++ D I D TG+ RGFGF+ + D + VDKV+E H ++GK ++ KR KK+FVGG+ SE+++K +F +G++ ++ D +TN RGF F+ + EE V ++L + + + EIK A+PK+ Sbjct: 133 AEGSKINASKNQQDDG----KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKR----AKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLL-ESRYHQIGSGKCEIKVAQPKE 312
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RO22_XENLA (Heterogeneous nuclear ribonucleoprotein A2 homolog 2 OS=Xenopus laevis PE=2 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 3.678e-24 Identity = 62/172 (36.05%), Postives = 101/172 (58.72%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKKAEPKK 660 K+FIGGL +TT + + ++G +TD V+M+D + + RGFGF+T++ + VD + H I+G+ VE KR + + + KK+FVGGI E L+ +F +YGK+ +II D ++ + RGFGFV F+ + VD+ +L K + I+ G E++KA K+ Sbjct: 10 KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSARPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQKYHTIN--GHNAEVRKALSKQ 179 HSP 2 Score: 68.9366 bits (167), Expect = 2.734e-11 Identity = 39/111 (35.14%), Postives = 59/111 (53.15%), Query Frame = 1 Query: 118 SDNPHTGDG--------------ASPG------KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 387 S PHT DG A PG K+F+GG+ +DT ++F +YG I + I+ D+ +G+ RGFGF+T+ D VDK V++ H ING E+++ + K Sbjct: 68 SARPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQKYHTINGHNAEVRKALSK 178
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RO21_XENLA (Heterogeneous nuclear ribonucleoprotein A2 homolog 1 OS=Xenopus laevis PE=2 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 4.803e-24 Identity = 62/172 (36.05%), Postives = 101/172 (58.72%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKKAEPKK 660 K+FIGGL +TT + ++ ++G +TD V+M+D + + RGFGF+T++ + VD + H I+G+ VE KR + + + KK+FVGGI E L+ +F +YGK+ +II D ++ + RGF FV FD + VD+ +L K + I+ G E++KA K+ Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMATRPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIVLQKYHTIN--GHNAEVRKALSKQ 179
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RB87F_DROME (Heterogeneous nuclear ribonucleoprotein 87F OS=Drosophila melanogaster GN=Hrb87F PE=1 SV=2) HSP 1 Score: 111.309 bits (277), Expect = 4.803e-24 Identity = 62/171 (36.26%), Postives = 98/171 (57.31%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSGQSKD--FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 660 K+FIGGL TT HF K+G+I D V+MKD T + RGFGFITY+ ++D H I+G+ VE KR +P+ S + KK+FVGG+ E+ L+ +F +G+++ I+ D +T + RGF F+ FD + VD+++ + + +++KKA K+ Sbjct: 25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNARPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQ-KTHSIKNKTLDVKKAIAKQ 194
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: HNRDL_CHICK (Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus GN=HNRPDL PE=2 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 6.273e-24 Identity = 63/189 (33.33%), Postives = 103/189 (54.50%), Query Frame = 1 Query: 97 AMGSKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 660 A GSK + DG K+FIGGL DT+ ++ ++G++ D I D TG+ RGFGF+ + D + V+KV+E H ++GK ++ KR KK+FVGG+ SE+++K +F +G++ ++ D +TN RGF F+ + EE V ++L + + + EIK A+PK+ Sbjct: 15 AEGSKINASKNQQDDG----KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLELKEHKLDGKLIDPKR----AKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLL-ESRYHQIGSGKCEIKVAQPKE 194
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: HNRPD_RAT (Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus GN=Hnrnpd PE=2 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.070e-23 Identity = 63/173 (36.42%), Postives = 100/173 (57.80%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED-THIINGKQVEIKRTIPKGSGQSKDFKT----KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 660 K+FIGGL DTT +F K+GD+ D + D TG+ RGFGF+ + + VDKV++ H +NGK ++ KR +K KT KKIFVGG+ E++++ +F +G+V ++ D++TN+ RGF F+ F EE V +++ K ++ ++ EIK A K+ Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKR--------AKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVAMSKE 259
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROA0_HUMAN (Heterogeneous nuclear ribonucleoprotein A0 OS=Homo sapiens GN=HNRNPA0 PE=1 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.397e-23 Identity = 60/171 (35.09%), Postives = 99/171 (57.89%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 660 K+FIGGL T+ + HF +G +TD V++ + T + R FGF+TY++ D + + H ++G VE+KR + + + K KK+FVGG+ V+E +L FS++G V + +II D ++ + RGFGFV F + + D+ + + G +VE+KKA PK+ Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADK-AAVVKFHPIQGHRVEVKKAVPKE 177
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: HNRDL_RAT (Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus GN=Hnrpdl PE=2 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.397e-23 Identity = 59/172 (34.30%), Postives = 97/172 (56.40%), Query Frame = 1 Query: 148 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 660 S K+FIGGL DT+ ++ ++G++ D I D TG+ RGFGF+ + D + VDKV+E H ++GK ++ KR KK+FVGG+ SE+++K +F +G++ ++ D +TN RGF F+ + EE V ++L + + + EIK A+PK+ Sbjct: 49 SGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKR----AKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLL-ESRYHQIGSGKCEIKVAQPKE 215
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: HNRPD_MOUSE (Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus GN=Hnrnpd PE=1 SV=2) HSP 1 Score: 108.997 bits (271), Expect = 2.384e-23 Identity = 67/191 (35.08%), Postives = 106/191 (55.50%), Query Frame = 1 Query: 112 SKSDNPHTGDGASPG---KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED-THIINGKQVEIKRTIPKGSGQSKDFKT----KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 660 S S HT A+ K+FIGGL DTT +F K+G++ D + D TG+ RGFGF+ + + VDKV++ H +NGK ++ KR +K KT KKIFVGG+ E++++ +F +G+V ++ D++TN+ RGF F+ F EE V +++ K ++ ++ EIK A K+ Sbjct: 80 SNSSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKR--------AKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVAMSKE 261
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: HNRDL_XENTR (Heterogeneous nuclear ribonucleoprotein D-like OS=Xenopus tropicalis GN=hnrpdl PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.384e-23 Identity = 61/171 (35.67%), Postives = 97/171 (56.73%), Query Frame = 1 Query: 154 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGT-QVEIKKAEPKK 660 GK+FIGGL DT+ ++ ++G++ D I D TG+ RGFGF+ + D VDKV+E H ++GK ++ KR KK+FVGG+ +E+++K +F +G++ ++ D +TN RGF FV + EE V ++L + GT + EIK A+PK+ Sbjct: 26 GKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLETKEHKLDGKLIDPKR----AKALKGKEPPKKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTGEEPVKKLLE--SRFHQIGTGKCEIKVAQPKE 190 The following BLAST results are available for this feature:
BLAST of DR404964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 155
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Sequences
The
following sequences are available for this feature:
EST sequence >DR404964 ID=DR404964; Name=DR404964; organism=Citrus sinensis; type=EST; length=680bpback to top |