DR404964

Overview
NameDR404964
Unique NameDR404964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: HNRDL_HUMAN (Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens GN=HNRPDL PE=1 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 2.156e-24
Identity = 64/189 (33.86%), Postives = 103/189 (54.50%), Query Frame = 1
Query:   97 AMGSKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 660
            A GSK  +      DG    K+FIGGL  DT+     ++  ++G++ D  I  D  TG+ RGFGF+ + D + VDKV+E   H ++GK ++ KR              KK+FVGG+    SE+++K +F  +G++   ++  D +TN  RGF F+ +  EE V ++L +     +   + EIK A+PK+
Sbjct:  133 AEGSKINASKNQQDDG----KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKR----AKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLL-ESRYHQIGSGKCEIKVAQPKE 312          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RO22_XENLA (Heterogeneous nuclear ribonucleoprotein A2 homolog 2 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.678e-24
Identity = 62/172 (36.05%), Postives = 101/172 (58.72%), Query Frame = 1
Query:  157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKKAEPKK 660
            K+FIGGL  +TT  +    + ++G +TD V+M+D  + + RGFGF+T++  + VD  +    H I+G+ VE KR + +   +        KK+FVGGI     E  L+ +F +YGK+   +II D ++ + RGFGFV F+  + VD+ +L K + I+  G   E++KA  K+
Sbjct:   10 KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSARPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQKYHTIN--GHNAEVRKALSKQ 179          

HSP 2 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 39/111 (35.14%), Postives = 59/111 (53.15%), Query Frame = 1
Query:  118 SDNPHTGDG--------------ASPG------KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 387
            S  PHT DG              A PG      K+F+GG+ +DT      ++F +YG I  + I+ D+ +G+ RGFGF+T+ D   VDK V++  H ING   E+++ + K
Sbjct:   68 SARPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQKYHTINGHNAEVRKALSK 178          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RO21_XENLA (Heterogeneous nuclear ribonucleoprotein A2 homolog 1 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.803e-24
Identity = 62/172 (36.05%), Postives = 101/172 (58.72%), Query Frame = 1
Query:  157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDE-MLSKGNMIDMAGTQVEIKKAEPKK 660
            K+FIGGL  +TT  +   ++ ++G +TD V+M+D  + + RGFGF+T++  + VD  +    H I+G+ VE KR + +   +        KK+FVGGI     E  L+ +F +YGK+   +II D ++ + RGF FV FD  + VD+ +L K + I+  G   E++KA  K+
Sbjct:   10 KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMATRPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIVLQKYHTIN--GHNAEVRKALSKQ 179          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RB87F_DROME (Heterogeneous nuclear ribonucleoprotein 87F OS=Drosophila melanogaster GN=Hrb87F PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 4.803e-24
Identity = 62/171 (36.26%), Postives = 98/171 (57.31%), Query Frame = 1
Query:  157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSGQSKD--FKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 660
            K+FIGGL   TT      HF K+G+I D V+MKD  T + RGFGFITY+   ++D       H I+G+ VE KR +P+    S +     KK+FVGG+     E+ L+ +F  +G+++   I+ D +T + RGF F+ FD  + VD+++ +     +    +++KKA  K+
Sbjct:   25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNARPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQ-KTHSIKNKTLDVKKAIAKQ 194          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: HNRDL_CHICK (Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus GN=HNRPDL PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.273e-24
Identity = 63/189 (33.33%), Postives = 103/189 (54.50%), Query Frame = 1
Query:   97 AMGSKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 660
            A GSK  +      DG    K+FIGGL  DT+     ++  ++G++ D  I  D  TG+ RGFGF+ + D + V+KV+E   H ++GK ++ KR              KK+FVGG+    SE+++K +F  +G++   ++  D +TN  RGF F+ +  EE V ++L +     +   + EIK A+PK+
Sbjct:   15 AEGSKINASKNQQDDG----KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLELKEHKLDGKLIDPKR----AKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLL-ESRYHQIGSGKCEIKVAQPKE 194          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: HNRPD_RAT (Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus GN=Hnrnpd PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.070e-23
Identity = 63/173 (36.42%), Postives = 100/173 (57.80%), Query Frame = 1
Query:  157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED-THIINGKQVEIKRTIPKGSGQSKDFKT----KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 660
            K+FIGGL  DTT      +F K+GD+ D  +  D  TG+ RGFGF+ + +   VDKV++   H +NGK ++ KR        +K  KT    KKIFVGG+     E++++ +F  +G+V   ++  D++TN+ RGF F+ F  EE V +++ K    ++  ++ EIK A  K+
Sbjct:   96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKR--------AKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVAMSKE 259          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROA0_HUMAN (Heterogeneous nuclear ribonucleoprotein A0 OS=Homo sapiens GN=HNRNPA0 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.397e-23
Identity = 60/171 (35.09%), Postives = 99/171 (57.89%), Query Frame = 1
Query:  157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 660
            K+FIGGL   T+ +    HF  +G +TD V++ +  T + R FGF+TY++    D  +  + H ++G  VE+KR + +   +      K KK+FVGG+   V+E +L   FS++G V + +II D ++ + RGFGFV F + +  D+  +      + G +VE+KKA PK+
Sbjct:    8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADK-AAVVKFHPIQGHRVEVKKAVPKE 177          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: HNRDL_RAT (Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus GN=Hnrpdl PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.397e-23
Identity = 59/172 (34.30%), Postives = 97/172 (56.40%), Query Frame = 1
Query:  148 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 660
            S  K+FIGGL  DT+     ++  ++G++ D  I  D  TG+ RGFGF+ + D + VDKV+E   H ++GK ++ KR              KK+FVGG+    SE+++K +F  +G++   ++  D +TN  RGF F+ +  EE V ++L +     +   + EIK A+PK+
Sbjct:   49 SGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKR----AKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLL-ESRYHQIGSGKCEIKVAQPKE 215          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: HNRPD_MOUSE (Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus GN=Hnrnpd PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.384e-23
Identity = 67/191 (35.08%), Postives = 106/191 (55.50%), Query Frame = 1
Query:  112 SKSDNPHTGDGASPG---KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED-THIINGKQVEIKRTIPKGSGQSKDFKT----KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 660
            S S   HT   A+     K+FIGGL  DTT      +F K+G++ D  +  D  TG+ RGFGF+ + +   VDKV++   H +NGK ++ KR        +K  KT    KKIFVGG+     E++++ +F  +G+V   ++  D++TN+ RGF F+ F  EE V +++ K    ++  ++ EIK A  K+
Sbjct:   80 SNSSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKR--------AKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVAMSKE 261          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: HNRDL_XENTR (Heterogeneous nuclear ribonucleoprotein D-like OS=Xenopus tropicalis GN=hnrpdl PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.384e-23
Identity = 61/171 (35.67%), Postives = 97/171 (56.73%), Query Frame = 1
Query:  154 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGT-QVEIKKAEPKK 660
            GK+FIGGL  DT+     ++  ++G++ D  I  D  TG+ RGFGF+ + D   VDKV+E   H ++GK ++ KR              KK+FVGG+    +E+++K +F  +G++   ++  D +TN  RGF FV +  EE V ++L   +     GT + EIK A+PK+
Sbjct:   26 GKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLETKEHKLDGKLIDPKR----AKALKGKEPPKKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTGEEPVKKLLE--SRFHQIGTGKCEIKVAQPKE 190          
The following BLAST results are available for this feature:
BLAST of DR404964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
HNRDL_HUMAN2.156e-2433.86Heterogeneous nuclear ribonucleoprotein D-like OS=... [more]
RO22_XENLA3.678e-2436.05Heterogeneous nuclear ribonucleoprotein A2 homolog... [more]
RO21_XENLA4.803e-2436.05Heterogeneous nuclear ribonucleoprotein A2 homolog... [more]
RB87F_DROME4.803e-2436.26Heterogeneous nuclear ribonucleoprotein 87F OS=Dro... [more]
HNRDL_CHICK6.273e-2433.33Heterogeneous nuclear ribonucleoprotein D-like OS=... [more]
HNRPD_RAT1.070e-2336.42Heterogeneous nuclear ribonucleoprotein D0 OS=Ratt... [more]
ROA0_HUMAN1.397e-2335.09Heterogeneous nuclear ribonucleoprotein A0 OS=Homo... [more]
HNRDL_RAT1.397e-2334.30Heterogeneous nuclear ribonucleoprotein D-like OS=... [more]
HNRPD_MOUSE2.384e-2335.08Heterogeneous nuclear ribonucleoprotein D0 OS=Mus ... [more]
HNRDL_XENTR2.384e-2335.67Heterogeneous nuclear ribonucleoprotein D-like OS=... [more]

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Properties
Property NameValue
Genbank descriptionCSAA-PNP1239P08 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone CSAA-PNP1239P08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404964 ID=DR404964; Name=DR404964; organism=Citrus sinensis; type=EST; length=680bp
GGGGAACCCTGAATTNNNNNTCATCATATTTTCCCCCAAACATTTTCTCT
CCTTTAATCTCCTCCTTTCTCTAGAAAACTCTGTTAACACGACCAAGCTA
TGGGATCCAAATCGAAATCTGATAATCCTCACACCGGCGACGGCGCAAGC
CCCGGGAAGATTTTCATAGGTGGATTGCCTAAAGACACGACCTATGCTAC
GTTTAATAAGCATTTTGGAAAATATGGTGACATAACGGATTCGGTTATAA
TGAAAGATCGGTACACGGGGCAGCCTAGGGGTTTTGGCTTTATAACTTAT
GCCGATCCTTCTGTTGTAGACAAGGTTATTGAAGATACCCACATAATTAA
TGGAAAACAGGTTGAGATTAAAAGAACTATCCCAAAAGGCTCAGGTCAAT
CAAAGGACTTCAAGACAAAGAAGATATTTGTTGGTGGGATACCATCATCA
GTATCTGAAGATGAACTCAAGAATTTCTTCTCCAAATATGGGAAAGTTCT
GGAACACCAAATCATACGTGATCATGAAACTAACCGTTCTAGAGGTTTTG
GTTTTGTAATTTTTGATAGTGAAGAAGTTGTGGATGAAATGTTATCGAAG
GGAAATATGATTGATATGGCTGGTACCCAGGTGGAGATCAAGAAAGCTGA
ACCAAAGAAATCCTCGAACCCTCCACCTCC
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