DR404964
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: HNDLA_XENLA (Heterogeneous nuclear ribonucleoprotein D-like-A OS=Xenopus laevis GN=hnrpdl-A PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.384e-23 Identity = 61/171 (35.67%), Postives = 98/171 (57.31%), Query Frame = 1 Query: 154 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGT-QVEIKKAEPKK 660 GK+FIGGL DT+ ++ ++G++ D I D TG+ RGFGF+ + D VDKV+E + H ++GK ++ KR KK+FVGG+ +E+++K +F +G++ ++ D +TN RGF FV + EE V ++L + GT + EIK A+PK+ Sbjct: 26 GKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLETNEHKLDGKLIDPKR----AKALKGKEPPKKVFVGGLSPETTEEQIKQYFGGFGEIENIELPIDTKTNERRGFCFVTYTGEEPVKKLLE--SRFHQIGTGKCEIKAAQPKE 190
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: HNRPD_HUMAN (Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens GN=HNRNPD PE=1 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.113e-23 Identity = 62/173 (35.84%), Postives = 100/173 (57.80%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED-THIINGKQVEIKRTIPKGSGQSKDFKT----KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 660 K+FIGGL DTT +F K+G++ D + D TG+ RGFGF+ + + VDKV++ H +NGK ++ KR +K KT KKIFVGG+ E++++ +F +G+V ++ D++TN+ RGF F+ F EE V +++ K ++ ++ EIK A K+ Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKR--------AKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVAMSKE 261
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: HNDLB_XENLA (Heterogeneous nuclear ribonucleoprotein D-like-B OS=Xenopus laevis GN=hnrpdl-B PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.113e-23 Identity = 62/170 (36.47%), Postives = 100/170 (58.82%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGT-QVEIKKAEPKK 660 K+FIGGL DT+ ++ ++G++ D I D TG+ RGFGF+ + D VDKV+E H ++GK ++ KR + Q K+ KK+FVGG+ +E+++K +F +G++ ++ D +TN RGF FV + EE V ++L + GT + EIK A+PK+ Sbjct: 35 KMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLETKEHKLDGKLIDPKRA---KALQGKE-PPKKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTDEEPVQKLLE--SRFHQIGTGKCEIKAAQPKE 198
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.222e-20 Identity = 53/177 (29.94%), Postives = 98/177 (55.37%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGSGQSK---DFKTK-KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS--KGNMIDMAGTQVEIKKAEPKKS 663 K+F+G LP D F G + + ++ +R T + RGFGF+T + +K +E + + ++G+Q+ + + P+GS + DF+ +++VG +P V L+ FS++GKV+ +++ D ET RSRGFGFV SE V++ ++ G +D +V + + P+++ Sbjct: 56 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEERPRRA 232
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 9.374e-20 Identity = 53/177 (29.94%), Postives = 95/177 (53.67%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGSGQSKDFKT----KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSSN 669 K+F+G LP D + F + G + + ++ +R T + RGFGF+T + DK +E + +NG+ + + + P+GS + +T +I+VG IP + + L+ FS++GKV+ +++ D E+ RSRGFGFV SE + E ++ + + G + + AE + N Sbjct: 98 KLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEERPRRN 274
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ELAV3_MOUSE (ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.224e-19 Identity = 55/179 (30.73%), Postives = 94/179 (52.51%), Query Frame = 1 Query: 148 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKR-TIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEP---KKSSNP 672 S + + LP++ T F FG GDI +++D+ TGQ G+GF+ Y+DP+ DK I + +NG +++ K + S + ++V G+P ++S+ E++ FS+YG+++ +I+ D T SRG GF+ FD +E + N Q + AEP K ++NP Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI---NTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLN------GQKPLGAAEPITVKFANNP 206
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ELAV3_HUMAN (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3) HSP 1 Score: 95.9005 bits (237), Expect = 2.088e-19 Identity = 55/179 (30.73%), Postives = 94/179 (52.51%), Query Frame = 1 Query: 148 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKR-TIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEP---KKSSNP 672 S + + LP++ T F FG GDI +++D+ TGQ G+GF+ Y+DP+ DK I + +NG +++ K + S + ++V G+P ++S+ E++ FS+YG+++ +I+ D T SRG GF+ FD +E + N Q + AEP K ++NP Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI---NTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN------GQKPLGAAEPITVKFANNP 206
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: TADBP_XENTR (TAR DNA-binding protein 43 OS=Xenopus tropicalis GN=tardbp PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.562e-19 Identity = 52/170 (30.59%), Postives = 89/170 (52.35%), Query Frame = 1 Query: 160 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSSN 669 + + GLP TT +F +G++ + KD TG +GFGF+ +AD KV+ H+I+G+ + K +P + +++K+FVG +S +EL+ FFS+YG+V++ I + R F FV F ++V + G + + G V + AEPK ++N Sbjct: 107 LIVLGLPWKTTEQDLKDYFSTFGEVIMVQVKKDAKTGHSKGFGFVRFADYETQVKVMSQRHMIDGRWCDCK--LPNSKSPDEPMRSRKVFVGRCTEDMSAEELRQFFSQYGEVVDVFIPKPF-----RAFAFVTFADDQVAQSLC--GEDLIIKGVSVHVSTAEPKHNNN 267
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: TADBP_PONAB (TAR DNA-binding protein 43 OS=Pongo abelii GN=TARDBP PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.562e-19 Identity = 54/170 (31.76%), Postives = 90/170 (52.94%), Query Frame = 1 Query: 160 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSSN 669 + + GLP TT ++F +G++ + KD TG +GFGF+ + + KV+ H+I+G+ + K K S Q + +++K+FVG ++EDEL+ FFS+YG V++ I + R F FV F +++ + G + + G V I AEPK +SN Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQS-QDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPF-----RAFAFVTFADDQIAQSLC--GEDLIIKGISVHISNAEPKHNSN 267
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: TADBP_HUMAN (TAR DNA-binding protein 43 OS=Homo sapiens GN=TARDBP PE=1 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.562e-19 Identity = 54/170 (31.76%), Postives = 90/170 (52.94%), Query Frame = 1 Query: 160 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSSN 669 + + GLP TT ++F +G++ + KD TG +GFGF+ + + KV+ H+I+G+ + K K S Q + +++K+FVG ++EDEL+ FFS+YG V++ I + R F FV F +++ + G + + G V I AEPK +SN Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQS-QDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPF-----RAFAFVTFADDQIAQSLC--GEDLIIKGISVHISNAEPKHNSN 267 The following BLAST results are available for this feature:
BLAST of DR404964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 155
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Sequences
The
following sequences are available for this feature:
EST sequence >DR404964 ID=DR404964; Name=DR404964; organism=Citrus sinensis; type=EST; length=680bpback to top |