DR404964

Overview
NameDR404964
Unique NameDR404964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: HNDLA_XENLA (Heterogeneous nuclear ribonucleoprotein D-like-A OS=Xenopus laevis GN=hnrpdl-A PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.384e-23
Identity = 61/171 (35.67%), Postives = 98/171 (57.31%), Query Frame = 1
Query:  154 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGT-QVEIKKAEPKK 660
            GK+FIGGL  DT+     ++  ++G++ D  I  D  TG+ RGFGF+ + D   VDKV+E + H ++GK ++ KR              KK+FVGG+    +E+++K +F  +G++   ++  D +TN  RGF FV +  EE V ++L   +     GT + EIK A+PK+
Sbjct:   26 GKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLETNEHKLDGKLIDPKR----AKALKGKEPPKKVFVGGLSPETTEEQIKQYFGGFGEIENIELPIDTKTNERRGFCFVTYTGEEPVKKLLE--SRFHQIGTGKCEIKAAQPKE 190          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: HNRPD_HUMAN (Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens GN=HNRNPD PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.113e-23
Identity = 62/173 (35.84%), Postives = 100/173 (57.80%), Query Frame = 1
Query:  157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIED-THIINGKQVEIKRTIPKGSGQSKDFKT----KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 660
            K+FIGGL  DTT      +F K+G++ D  +  D  TG+ RGFGF+ + +   VDKV++   H +NGK ++ KR        +K  KT    KKIFVGG+     E++++ +F  +G+V   ++  D++TN+ RGF F+ F  EE V +++ K    ++  ++ EIK A  K+
Sbjct:   98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKR--------AKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVAMSKE 261          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: HNDLB_XENLA (Heterogeneous nuclear ribonucleoprotein D-like-B OS=Xenopus laevis GN=hnrpdl-B PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.113e-23
Identity = 62/170 (36.47%), Postives = 100/170 (58.82%), Query Frame = 1
Query:  157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGT-QVEIKKAEPKK 660
            K+FIGGL  DT+     ++  ++G++ D  I  D  TG+ RGFGF+ + D   VDKV+E   H ++GK ++ KR     + Q K+   KK+FVGG+    +E+++K +F  +G++   ++  D +TN  RGF FV +  EE V ++L   +     GT + EIK A+PK+
Sbjct:   35 KMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLETKEHKLDGKLIDPKRA---KALQGKE-PPKKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTDEEPVQKLLE--SRFHQIGTGKCEIKAAQPKE 198          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.222e-20
Identity = 53/177 (29.94%), Postives = 98/177 (55.37%), Query Frame = 1
Query:  157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGSGQSK---DFKTK-KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLS--KGNMIDMAGTQVEIKKAEPKKS 663
            K+F+G LP D         F   G +  + ++ +R T + RGFGF+T +     +K +E  + + ++G+Q+ + +  P+GS +     DF+   +++VG +P  V    L+  FS++GKV+  +++ D ET RSRGFGFV   SE  V++ ++   G  +D    +V + +  P+++
Sbjct:   56 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEERPRRA 232          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.374e-20
Identity = 53/177 (29.94%), Postives = 95/177 (53.67%), Query Frame = 1
Query:  157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGSGQSKDFKT----KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSSN 669
            K+F+G LP D       + F + G +  + ++ +R T + RGFGF+T +     DK +E    + +NG+ + + +  P+GS   +  +T     +I+VG IP  + +  L+  FS++GKV+  +++ D E+ RSRGFGFV   SE  + E ++  +   + G  + +  AE +   N
Sbjct:   98 KLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEERPRRN 274          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ELAV3_MOUSE (ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.224e-19
Identity = 55/179 (30.73%), Postives = 94/179 (52.51%), Query Frame = 1
Query:  148 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKR-TIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEP---KKSSNP 672
            S   + +  LP++ T   F   FG  GDI    +++D+ TGQ  G+GF+ Y+DP+  DK I   + +NG +++ K   +      S   +   ++V G+P ++S+ E++  FS+YG+++  +I+ D  T  SRG GF+ FD     +E +   N       Q  +  AEP   K ++NP
Sbjct:   37 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI---NTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLN------GQKPLGAAEPITVKFANNP 206          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ELAV3_HUMAN (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 2.088e-19
Identity = 55/179 (30.73%), Postives = 94/179 (52.51%), Query Frame = 1
Query:  148 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKR-TIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEP---KKSSNP 672
            S   + +  LP++ T   F   FG  GDI    +++D+ TGQ  G+GF+ Y+DP+  DK I   + +NG +++ K   +      S   +   ++V G+P ++S+ E++  FS+YG+++  +I+ D  T  SRG GF+ FD     +E +   N       Q  +  AEP   K ++NP
Sbjct:   37 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI---NTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN------GQKPLGAAEPITVKFANNP 206          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: TADBP_XENTR (TAR DNA-binding protein 43 OS=Xenopus tropicalis GN=tardbp PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.562e-19
Identity = 52/170 (30.59%), Postives = 89/170 (52.35%), Query Frame = 1
Query:  160 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSSN 669
            + + GLP  TT      +F  +G++    + KD  TG  +GFGF+ +AD     KV+   H+I+G+  + K  +P      +  +++K+FVG     +S +EL+ FFS+YG+V++  I +       R F FV F  ++V   +   G  + + G  V +  AEPK ++N
Sbjct:  107 LIVLGLPWKTTEQDLKDYFSTFGEVIMVQVKKDAKTGHSKGFGFVRFADYETQVKVMSQRHMIDGRWCDCK--LPNSKSPDEPMRSRKVFVGRCTEDMSAEELRQFFSQYGEVVDVFIPKPF-----RAFAFVTFADDQVAQSLC--GEDLIIKGVSVHVSTAEPKHNNN 267          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: TADBP_PONAB (TAR DNA-binding protein 43 OS=Pongo abelii GN=TARDBP PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.562e-19
Identity = 54/170 (31.76%), Postives = 90/170 (52.94%), Query Frame = 1
Query:  160 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSSN 669
            + + GLP  TT     ++F  +G++    + KD  TG  +GFGF+ + +     KV+   H+I+G+  + K    K S Q +  +++K+FVG     ++EDEL+ FFS+YG V++  I +       R F FV F  +++   +   G  + + G  V I  AEPK +SN
Sbjct:  106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQS-QDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPF-----RAFAFVTFADDQIAQSLC--GEDLIIKGISVHISNAEPKHNSN 267          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: TADBP_HUMAN (TAR DNA-binding protein 43 OS=Homo sapiens GN=TARDBP PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.562e-19
Identity = 54/170 (31.76%), Postives = 90/170 (52.94%), Query Frame = 1
Query:  160 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSSN 669
            + + GLP  TT     ++F  +G++    + KD  TG  +GFGF+ + +     KV+   H+I+G+  + K    K S Q +  +++K+FVG     ++EDEL+ FFS+YG V++  I +       R F FV F  +++   +   G  + + G  V I  AEPK +SN
Sbjct:  106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQS-QDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPF-----RAFAFVTFADDQIAQSLC--GEDLIIKGISVHISNAEPKHNSN 267          
The following BLAST results are available for this feature:
BLAST of DR404964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
HNDLA_XENLA2.384e-2335.67Heterogeneous nuclear ribonucleoprotein D-like-A O... [more]
HNRPD_HUMAN3.113e-2335.84Heterogeneous nuclear ribonucleoprotein D0 OS=Homo... [more]
HNDLB_XENLA3.113e-2336.47Heterogeneous nuclear ribonucleoprotein D-like-B O... [more]
ROC1_SPIOL3.222e-2029.9428 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
ROC3_NICSY9.374e-2029.9428 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ELAV3_MOUSE1.224e-1930.73ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1... [more]
ELAV3_HUMAN2.088e-1930.73ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1... [more]
TADBP_XENTR3.562e-1930.59TAR DNA-binding protein 43 OS=Xenopus tropicalis G... [more]
TADBP_PONAB3.562e-1931.76TAR DNA-binding protein 43 OS=Pongo abelii GN=TARD... [more]
TADBP_HUMAN3.562e-1931.76TAR DNA-binding protein 43 OS=Homo sapiens GN=TARD... [more]

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Properties
Property NameValue
Genbank descriptionCSAA-PNP1239P08 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone CSAA-PNP1239P08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404964 ID=DR404964; Name=DR404964; organism=Citrus sinensis; type=EST; length=680bp
GGGGAACCCTGAATTNNNNNTCATCATATTTTCCCCCAAACATTTTCTCT
CCTTTAATCTCCTCCTTTCTCTAGAAAACTCTGTTAACACGACCAAGCTA
TGGGATCCAAATCGAAATCTGATAATCCTCACACCGGCGACGGCGCAAGC
CCCGGGAAGATTTTCATAGGTGGATTGCCTAAAGACACGACCTATGCTAC
GTTTAATAAGCATTTTGGAAAATATGGTGACATAACGGATTCGGTTATAA
TGAAAGATCGGTACACGGGGCAGCCTAGGGGTTTTGGCTTTATAACTTAT
GCCGATCCTTCTGTTGTAGACAAGGTTATTGAAGATACCCACATAATTAA
TGGAAAACAGGTTGAGATTAAAAGAACTATCCCAAAAGGCTCAGGTCAAT
CAAAGGACTTCAAGACAAAGAAGATATTTGTTGGTGGGATACCATCATCA
GTATCTGAAGATGAACTCAAGAATTTCTTCTCCAAATATGGGAAAGTTCT
GGAACACCAAATCATACGTGATCATGAAACTAACCGTTCTAGAGGTTTTG
GTTTTGTAATTTTTGATAGTGAAGAAGTTGTGGATGAAATGTTATCGAAG
GGAAATATGATTGATATGGCTGGTACCCAGGTGGAGATCAAGAAAGCTGA
ACCAAAGAAATCCTCGAACCCTCCACCTCC
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