DR404964

Overview
NameDR404964
Unique NameDR404964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.076e-19
Identity = 51/177 (28.81%), Postives = 94/177 (53.11%), Query Frame = 1
Query:  157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGSGQSKDFKT----KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSSN 669
            K+F+G LP D       + F + G +  + ++ +R T Q RGFGF+T +     +K +E  + + +NG+ + + +   +G    +  +T     +I+VG IP  + +  L+  FS++GKV+  +++ D ET RSRGFGFV   SE  + + ++  +   + G  + +  AE +   N
Sbjct:  137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRSRRN 313          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.935e-19
Identity = 53/198 (26.77%), Postives = 102/198 (51.52%), Query Frame = 1
Query:   91 DQAMGSKSK---SDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGSGQSKDFKTK----KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 657
            D++ G  S+   S+     + +   K+F+G L  D         F + G +  + ++ +R T Q RGFGF+T +     +  +E  + + +NG+ + + +  P+GS   +  +      +++VG +P  V    L+  FS++GKV+E +++ D ET RSRGFGFV     + ++E +S  +  ++ G  + +  AE +
Sbjct:  126 DESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.354e-18
Identity = 48/180 (26.67%), Postives = 95/180 (52.78%), Query Frame = 1
Query:  157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGSGQSKDFK-----------TKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 657
            KIF+G LP     A   + F + G++    ++ D+ TG+ RGFGF+T +    V+   +  + + ++G+ + +    P    ++  F+           + +++VG +   V +D L+  FS+ GKV++ +++ D ++ RSRGFGFV + S E V+  +   + +D+ G  + +  AE +
Sbjct:   88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEAR 267          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ELAV4_RAT (ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.143e-18
Identity = 45/150 (30.00%), Postives = 81/150 (54.00%), Query Frame = 1
Query:  148 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 594
            S   + +  LP++ T   F   FG  G+I    +++D+ TGQ  G+GF+ Y DP   +K I   + +NG +++ K   +      S   +   ++V G+P ++++ EL+  FS+YG+++  +I+ D  T  SRG GF+ FD     +E +
Sbjct:   37 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 183          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ELAV4_MOUSE (ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.143e-18
Identity = 45/150 (30.00%), Postives = 81/150 (54.00%), Query Frame = 1
Query:  148 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 594
            S   + +  LP++ T   F   FG  G+I    +++D+ TGQ  G+GF+ Y DP   +K I   + +NG +++ K   +      S   +   ++V G+P ++++ EL+  FS+YG+++  +I+ D  T  SRG GF+ FD     +E +
Sbjct:   49 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 195          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ELAV4_HUMAN (ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.143e-18
Identity = 45/150 (30.00%), Postives = 81/150 (54.00%), Query Frame = 1
Query:  148 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 594
            S   + +  LP++ T   F   FG  G+I    +++D+ TGQ  G+GF+ Y DP   +K I   + +NG +++ K   +      S   +   ++V G+P ++++ EL+  FS+YG+++  +I+ D  T  SRG GF+ FD     +E +
Sbjct:   44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 190          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: TADBP_CHICK (TAR DNA-binding protein 43 OS=Gallus gallus GN=TARDBP PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.718e-18
Identity = 53/170 (31.18%), Postives = 89/170 (52.35%), Query Frame = 1
Query:  160 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSSN 669
            + + GLP  TT     ++F  +G++    + KD  TG  +GFGF+ + D     KV+   H+I+G+  + K    K S   +  +++K+FVG     ++ DEL+ FF++YG+V++  I +       R F FV F  ++V   +   G  + + G  V I  AEPK +SN
Sbjct:  106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTDYETQVKVMSQRHMIDGRWCDCKLPNSKQS-PDEPLRSRKVFVGRCTEDMTADELQQFFAQYGEVVDVFIPKPF-----RAFAFVTFADDQVAQSLC--GEDLIIKGISVHISNAEPKHNSN 267          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.773e-18
Identity = 56/194 (28.87%), Postives = 103/194 (53.09%), Query Frame = 1
Query:  106 SKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYA---DPSVVDKVIEDTHIINGKQVEIKRTIPKGSG------QSKDFK----TKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKA 648
            + S S    + DG    ++++G +P++           ++G I  + +M D+Y+G+ R FGF+T     D + V + + DT I  G+++++  T     G      Q++D +      K+++G +  +V+ + LK+FFS+ GKVL  ++ R   T++S GFGFV F SEE V+  +   N   + G ++ + KA
Sbjct:   68 TSSSSTASSSSDGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEI-GGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNKA 260          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ELAV3_XENLA (ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.773e-18
Identity = 44/150 (29.33%), Postives = 81/150 (54.00%), Query Frame = 1
Query:  148 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKR-TIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 594
            S   + +  LP++ T   F   FG  G+I    +++D+ TGQ  G+GF+ Y DP+  DK I   + +NG +++ K   +      S   +   ++V  +P ++++ E++  FS+YG+++  +I+ D  T  SRG GF+ FD     +E +
Sbjct:   32 SKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAI---NTLNGLKLQTKTIKVSYARPSSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 178          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ELAV2_PONAB (ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.146e-17
Identity = 48/162 (29.63%), Postives = 86/162 (53.09%), Query Frame = 1
Query:  112 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 594
            S  D+ +T D  S   + +  LP++ T       FG  G+I    +++D+ TGQ  G+GF+ Y DP   +K I   + +NG +++ K   +      S   +   ++V G+P ++++ EL+  FS+YG+++  +I+ D  T  SRG GF+ FD     +E +
Sbjct:   27 SPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183          
The following BLAST results are available for this feature:
BLAST of DR404964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
ROC4_NICSY6.076e-1928.8131 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC3_ARATH7.935e-1926.7731 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ROC1_NICSY1.354e-1826.6729 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ELAV4_RAT5.143e-1830.00ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4... [more]
ELAV4_MOUSE5.143e-1830.00ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1... [more]
ELAV4_HUMAN5.143e-1830.00ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1... [more]
TADBP_CHICK6.718e-1831.18TAR DNA-binding protein 43 OS=Gallus gallus GN=TAR... [more]
RRP2_SPIOL8.773e-1828.8730S ribosomal protein 2, chloroplastic OS=Spinacia... [more]
ELAV3_XENLA8.773e-1829.33ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE... [more]
ELAV2_PONAB1.146e-1729.63ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionCSAA-PNP1239P08 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone CSAA-PNP1239P08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404964 ID=DR404964; Name=DR404964; organism=Citrus sinensis; type=EST; length=680bp
GGGGAACCCTGAATTNNNNNTCATCATATTTTCCCCCAAACATTTTCTCT
CCTTTAATCTCCTCCTTTCTCTAGAAAACTCTGTTAACACGACCAAGCTA
TGGGATCCAAATCGAAATCTGATAATCCTCACACCGGCGACGGCGCAAGC
CCCGGGAAGATTTTCATAGGTGGATTGCCTAAAGACACGACCTATGCTAC
GTTTAATAAGCATTTTGGAAAATATGGTGACATAACGGATTCGGTTATAA
TGAAAGATCGGTACACGGGGCAGCCTAGGGGTTTTGGCTTTATAACTTAT
GCCGATCCTTCTGTTGTAGACAAGGTTATTGAAGATACCCACATAATTAA
TGGAAAACAGGTTGAGATTAAAAGAACTATCCCAAAAGGCTCAGGTCAAT
CAAAGGACTTCAAGACAAAGAAGATATTTGTTGGTGGGATACCATCATCA
GTATCTGAAGATGAACTCAAGAATTTCTTCTCCAAATATGGGAAAGTTCT
GGAACACCAAATCATACGTGATCATGAAACTAACCGTTCTAGAGGTTTTG
GTTTTGTAATTTTTGATAGTGAAGAAGTTGTGGATGAAATGTTATCGAAG
GGAAATATGATTGATATGGCTGGTACCCAGGTGGAGATCAAGAAAGCTGA
ACCAAAGAAATCCTCGAACCCTCCACCTCC
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